Wall clock time and date at job start Wed Apr 1 2020 02:51:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 N 1.30228 * 124.92365 * 2 1 4 4 C 1.35556 * 109.70275 * 180.02562 * 3 2 1 5 5 C 1.40012 * 133.39767 * 179.97438 * 4 3 2 6 6 C 1.36192 * 120.07690 * 180.02562 * 5 4 3 7 7 C 1.40170 * 120.51666 * 359.97438 * 6 5 4 8 8 C 1.47616 * 119.93422 * 179.97438 * 7 6 5 9 9 O 1.21586 * 119.99731 * 179.97438 * 8 7 6 10 10 N 1.34778 * 120.00030 * 359.97438 * 8 7 6 11 11 C 1.46495 * 119.99718 * 180.02562 * 10 8 7 12 12 H 1.08994 * 109.47210 * 324.99916 * 11 10 8 13 13 C 1.52999 * 109.47389 * 85.00140 * 11 10 8 14 14 C 1.53006 * 109.46696 * 204.99517 * 11 10 8 15 15 C 1.52997 * 109.46841 * 65.00499 * 14 11 10 16 16 H 1.09005 * 109.47159 * 54.99606 * 15 14 11 17 17 C 1.52999 * 109.47264 * 174.99605 * 15 14 11 18 18 N 1.46498 * 109.47167 * 294.99436 * 15 14 11 19 19 C 1.36935 * 120.00239 * 154.99975 * 18 15 14 20 20 H 1.08004 * 120.00069 * 0.02562 * 19 18 15 21 21 C 1.38811 * 120.00368 * 180.02562 * 19 18 15 22 22 N 1.31624 * 119.99540 * 359.72375 * 21 19 18 23 23 Si 1.86800 * 120.00451 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.47364 * 179.72253 * 23 21 19 25 25 H 1.48508 * 109.46883 * 299.72375 * 23 21 19 26 26 H 1.48497 * 109.46870 * 59.72186 * 23 21 19 27 27 C 1.39371 * 120.12710 * 0.25285 * 7 6 5 28 28 C 1.38411 * 119.57531 * 359.51938 * 27 7 6 29 29 N 1.35852 * 124.92880 * 180.02562 * 2 1 3 30 30 C 1.46504 * 126.36333 * 359.97438 * 29 2 1 31 31 H 1.09003 * 109.48019 * 269.98196 * 1 2 3 32 32 H 1.09001 * 109.47570 * 29.98554 * 1 2 3 33 33 H 1.09007 * 109.47149 * 149.98201 * 1 2 3 34 34 H 1.08001 * 119.96470 * 0.02562 * 5 4 3 35 35 H 1.07999 * 119.74134 * 179.97438 * 6 5 4 36 36 H 0.96997 * 119.99976 * 359.97438 * 10 8 7 37 37 H 1.09007 * 109.47428 * 59.99518 * 13 11 10 38 38 H 1.09001 * 109.47632 * 179.97438 * 13 11 10 39 39 H 1.09000 * 109.47086 * 299.99744 * 13 11 10 40 40 H 1.08996 * 109.47489 * 304.99916 * 14 11 10 41 41 H 1.09001 * 109.46720 * 184.99882 * 14 11 10 42 42 H 1.08994 * 109.47214 * 179.97438 * 17 15 14 43 43 H 1.08994 * 109.47102 * 299.99987 * 17 15 14 44 44 H 1.09005 * 109.47033 * 59.99923 * 17 15 14 45 45 H 0.97004 * 119.99747 * 335.00715 * 18 15 14 46 46 H 0.97000 * 120.00481 * 0.27542 * 22 21 19 47 47 H 1.08001 * 120.20936 * 179.72412 * 27 7 6 48 48 H 1.09002 * 109.46565 * 269.99254 * 30 29 2 49 49 H 1.08997 * 109.47046 * 29.98621 * 30 29 2 50 50 H 1.09000 * 109.47446 * 149.99359 * 30 29 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2525 1.0678 0.0000 4 6 3.5605 0.7119 -0.0006 5 6 4.7558 1.4410 -0.0013 6 6 5.9522 0.7902 -0.0023 7 6 6.0005 -0.6106 -0.0021 8 6 7.3044 -1.3027 -0.0037 9 8 7.3476 -2.5178 -0.0031 10 7 8.4468 -0.5877 -0.0059 11 6 9.7408 -1.2746 -0.0082 12 1 9.6680 -2.1883 0.5816 13 6 10.1297 -1.6251 -1.4458 14 6 10.8053 -0.3587 0.5993 15 6 10.4821 -0.1091 2.0737 16 1 10.3835 -1.0636 2.5908 17 6 11.6105 0.7029 2.7128 18 7 9.2248 0.6354 2.1788 19 6 8.4684 0.5446 3.3166 20 1 8.7989 -0.0755 4.1368 21 6 7.2767 1.2496 3.4160 22 7 6.8766 2.0096 2.4186 23 14 6.2451 1.1263 4.9685 24 1 5.0337 1.9734 4.8264 25 1 5.8394 -0.2861 5.1823 26 1 7.0424 1.5937 6.1309 27 6 4.8199 -1.3513 -0.0061 28 6 3.6015 -0.6947 -0.0003 29 7 2.2848 -1.1138 -0.0005 30 6 1.8149 -2.5014 -0.0006 31 1 -0.3635 -0.0003 1.0276 32 1 -0.3634 0.8901 -0.5136 33 1 -0.3634 -0.8899 -0.5141 34 1 4.7291 2.5206 -0.0010 35 1 6.8709 1.3580 -0.0032 36 1 8.4123 0.3817 -0.0068 37 1 10.2024 -0.7113 -2.0356 38 1 11.0927 -2.1358 -1.4475 39 1 9.3713 -2.2775 -1.8786 40 1 10.8163 0.5906 0.0639 41 1 11.7830 -0.8336 0.5170 42 1 11.3800 0.8812 3.7631 43 1 12.5459 0.1491 2.6346 44 1 11.7091 1.6575 2.1958 45 1 8.9281 1.1926 1.4423 46 1 7.4124 2.0740 1.6126 47 1 4.8556 -2.4307 -0.0105 48 1 1.6989 -2.8457 1.0271 49 1 0.8551 -2.5600 -0.5139 50 1 2.5410 -3.1310 -0.5149 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001135184356.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:51:47 Heat of formation + Delta-G solvation = 35.114943 kcal Electronic energy + Delta-G solvation = -31593.532589 eV Core-core repulsion = 27621.238648 eV Total energy + Delta-G solvation = -3972.293941 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -43.17540 -41.02868 -38.63654 -37.89937 -35.95946 -35.20978 -34.28894 -32.70215 -31.83492 -31.36302 -30.00634 -28.65830 -27.81715 -27.65015 -25.45014 -24.56229 -23.20075 -22.34289 -21.79056 -21.45966 -20.86492 -19.38750 -18.85862 -18.15131 -17.48089 -17.01731 -16.94943 -16.72464 -16.05836 -15.88336 -15.59472 -15.35815 -15.09055 -14.86687 -14.50057 -14.41841 -14.39176 -14.23983 -13.93228 -13.81419 -13.53074 -13.41005 -13.34111 -13.11130 -13.04555 -12.87833 -12.76189 -12.54558 -12.48437 -12.22232 -12.14218 -11.89978 -11.76850 -11.61244 -11.34820 -11.07426 -11.02071 -10.91413 -10.83630 -9.96205 -9.29678 -9.03955 -8.81988 -8.11950 -5.06076 -0.34323 0.51059 1.48679 1.52913 1.59385 1.60366 1.75890 2.12645 2.36703 2.72326 2.98268 3.20129 3.50040 3.57340 3.69793 3.83488 3.86172 3.92702 4.02869 4.10485 4.27271 4.29395 4.33361 4.36803 4.37707 4.50456 4.60967 4.62466 4.68816 4.72185 4.73406 4.78138 4.80919 4.85555 5.00955 5.03715 5.05597 5.09150 5.16989 5.31221 5.32532 5.35950 5.43678 5.54018 5.56118 5.68185 5.77037 5.83079 6.21898 6.59418 6.73555 6.87431 7.27373 7.30835 8.15330 8.28699 9.34715 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.011224 B = 0.004300 C = 0.003472 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2493.984958 B = 6510.043200 C = 8063.194940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C 0.287 3.713 3 N -0.540 5.540 4 C 0.053 3.947 5 C -0.070 4.070 6 C -0.044 4.044 7 C -0.136 4.136 8 C 0.569 3.431 9 O -0.590 6.590 10 N -0.688 5.688 11 C 0.145 3.855 12 H 0.057 0.943 13 C -0.151 4.151 14 C -0.121 4.121 15 C 0.167 3.833 16 H 0.026 0.974 17 C -0.152 4.152 18 N -0.730 5.730 19 C -0.323 4.323 20 H 0.042 0.958 21 C -0.076 4.076 22 N -0.939 5.939 23 Si 1.099 2.901 24 H -0.298 1.298 25 H -0.302 1.302 26 H -0.285 1.285 27 C -0.054 4.054 28 C 0.014 3.986 29 N -0.491 5.491 30 C 0.069 3.931 31 H 0.102 0.898 32 H 0.101 0.899 33 H 0.114 0.886 34 H 0.125 0.875 35 H 0.126 0.874 36 H 0.399 0.601 37 H 0.069 0.931 38 H 0.088 0.912 39 H 0.040 0.960 40 H 0.077 0.923 41 H 0.112 0.888 42 H 0.026 0.974 43 H 0.070 0.930 44 H 0.048 0.952 45 H 0.359 0.641 46 H 0.250 0.750 47 H 0.132 0.868 48 H 0.083 0.917 49 H 0.127 0.873 50 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.815 -7.090 -9.976 13.550 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.022 3.978 3 N -0.262 5.262 4 C -0.066 4.066 5 C -0.090 4.090 6 C -0.066 4.066 7 C -0.141 4.141 8 C 0.358 3.642 9 O -0.474 6.474 10 N -0.338 5.338 11 C 0.041 3.959 12 H 0.076 0.924 13 C -0.209 4.209 14 C -0.159 4.159 15 C 0.059 3.941 16 H 0.044 0.956 17 C -0.212 4.212 18 N -0.375 5.375 19 C -0.455 4.455 20 H 0.061 0.939 21 C -0.272 4.272 22 N -0.586 5.586 23 Si 0.930 3.070 24 H -0.224 1.224 25 H -0.230 1.230 26 H -0.212 1.212 27 C -0.075 4.075 28 C -0.094 4.094 29 N -0.182 5.182 30 C -0.071 4.071 31 H 0.121 0.879 32 H 0.120 0.880 33 H 0.132 0.868 34 H 0.143 0.857 35 H 0.143 0.857 36 H 0.237 0.763 37 H 0.088 0.912 38 H 0.107 0.893 39 H 0.059 0.941 40 H 0.095 0.905 41 H 0.130 0.870 42 H 0.045 0.955 43 H 0.089 0.911 44 H 0.067 0.933 45 H 0.193 0.807 46 H 0.063 0.937 47 H 0.150 0.850 48 H 0.102 0.898 49 H 0.145 0.855 50 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -7.373 -6.880 -9.038 13.542 hybrid contribution 1.743 -0.552 -0.162 1.836 sum -5.630 -7.432 -9.200 13.099 Atomic orbital electron populations 1.20642 0.80209 1.06449 1.05639 1.24700 0.97684 0.80012 0.95443 1.70347 1.00924 1.29320 1.25616 1.19416 0.92539 0.91115 1.03530 1.19772 0.89079 0.99706 1.00442 1.20464 0.97816 0.92060 0.96215 1.19623 0.92762 0.94037 1.07683 1.18106 0.84704 0.86357 0.75082 1.90635 1.88322 1.14681 1.53721 1.45909 1.05174 1.10131 1.72587 1.20998 0.82003 0.95546 0.97327 0.92447 1.22109 1.02039 1.02087 0.94714 1.22159 0.98911 1.00102 0.94758 1.20417 0.85778 0.93336 0.94585 0.95622 1.22253 0.98696 1.00453 0.99828 1.42462 1.22528 1.55616 1.16895 1.19955 1.04186 1.25961 0.95372 0.93944 1.26076 0.97323 0.98082 1.05710 1.71101 1.40428 1.41259 1.05846 0.82937 0.75291 0.74928 0.73829 1.22425 1.23008 1.21171 1.19846 0.88169 0.99571 0.99962 1.18664 0.86391 0.94847 1.09483 1.45330 1.03127 1.09269 1.60426 1.22368 1.03191 0.76794 1.04796 0.87941 0.88029 0.86766 0.85724 0.85662 0.76261 0.91230 0.89277 0.94115 0.90457 0.86988 0.95489 0.91088 0.93335 0.80653 0.93720 0.85008 0.89833 0.85462 0.89574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.02 10.17 71.23 0.72 -0.30 16 2 C 0.29 8.04 7.85 137.95 1.08 9.12 16 3 N -0.54 -20.40 11.27 -179.82 -2.03 -22.43 16 4 C 0.05 2.21 7.23 39.60 0.29 2.49 16 5 C -0.07 -3.00 10.03 22.22 0.22 -2.78 16 6 C -0.04 -1.85 7.73 22.26 0.17 -1.68 16 7 C -0.14 -5.79 5.88 -20.06 -0.12 -5.91 16 8 C 0.57 24.37 7.73 86.72 0.67 25.04 16 9 O -0.59 -27.59 15.99 -3.99 -0.06 -27.65 16 10 N -0.69 -25.56 3.75 -445.62 -1.67 -27.23 16 11 C 0.15 4.62 2.57 44.99 0.12 4.74 16 12 H 0.06 2.15 7.58 -2.39 -0.02 2.13 16 13 C -0.15 -3.80 9.48 71.98 0.68 -3.12 16 14 C -0.12 -3.37 4.43 30.60 0.14 -3.23 16 15 C 0.17 6.19 2.89 44.99 0.13 6.32 16 16 H 0.03 1.07 8.08 -2.38 -0.02 1.05 16 17 C -0.15 -5.06 9.49 71.98 0.68 -4.38 16 18 N -0.73 -33.27 3.84 -322.94 -1.24 -34.51 16 19 C -0.32 -17.47 9.93 84.03 0.83 -16.63 16 20 H 0.04 2.40 7.83 -2.91 -0.02 2.38 16 21 C -0.08 -4.21 5.50 84.86 0.47 -3.75 16 22 N -0.94 -52.18 12.25 21.65 0.27 -51.91 16 23 Si 1.10 54.49 29.92 68.60 2.05 56.54 16 24 H -0.30 -15.30 7.11 99.48 0.71 -14.59 16 25 H -0.30 -14.91 7.11 99.48 0.71 -14.21 16 26 H -0.28 -13.33 7.11 99.48 0.71 -12.62 16 27 C -0.05 -2.13 9.58 22.58 0.22 -1.91 16 28 C 0.01 0.54 6.86 38.79 0.27 0.81 16 29 N -0.49 -13.84 3.21 -528.98 -1.70 -15.54 16 30 C 0.07 1.12 10.96 127.77 1.40 2.52 16 31 H 0.10 1.24 8.14 -2.39 -0.02 1.22 16 32 H 0.10 1.38 8.14 -2.39 -0.02 1.36 16 33 H 0.11 0.78 7.01 -2.38 -0.02 0.77 16 34 H 0.12 5.27 8.06 -2.91 -0.02 5.24 16 35 H 0.13 5.18 4.70 -2.91 -0.01 5.16 16 36 H 0.40 14.71 4.51 -92.71 -0.42 14.29 16 37 H 0.07 1.54 8.14 -2.38 -0.02 1.52 16 38 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 39 H 0.04 1.17 8.14 -2.39 -0.02 1.15 16 40 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 41 H 0.11 2.37 8.14 -2.39 -0.02 2.35 16 42 H 0.03 1.01 8.14 -2.39 -0.02 0.99 16 43 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 44 H 0.05 1.56 8.14 -2.38 -0.02 1.54 16 45 H 0.36 16.23 4.54 -92.71 -0.42 15.81 16 46 H 0.25 13.26 4.76 -92.71 -0.44 12.82 16 47 H 0.13 4.91 7.64 -2.91 -0.02 4.89 16 48 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 49 H 0.13 0.98 6.99 -2.39 -0.02 0.97 16 50 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 Total: -1.00 -77.06 399.24 4.05 -73.02 By element: Atomic # 1 Polarization: 41.91 SS G_CDS: 0.45 Total: 42.36 kcal Atomic # 6 Polarization: -0.62 SS G_CDS: 7.97 Total: 7.35 kcal Atomic # 7 Polarization: -145.25 SS G_CDS: -6.37 Total: -151.62 kcal Atomic # 8 Polarization: -27.59 SS G_CDS: -0.06 Total: -27.65 kcal Atomic # 14 Polarization: 54.49 SS G_CDS: 2.05 Total: 56.54 kcal Total: -77.06 4.05 -73.02 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135184356.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.131 kcal (2) G-P(sol) polarization free energy of solvation -77.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.067 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.016 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.115 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds