Wall clock time and date at job start Wed Apr 1 2020 02:51:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 N 1.30223 * 124.92392 * 2 1 4 4 C 1.35549 * 109.70563 * 180.02562 * 3 2 1 5 5 C 1.40016 * 133.40040 * 180.02562 * 4 3 2 6 6 C 1.36193 * 120.07660 * 180.02562 * 5 4 3 7 7 C 1.40167 * 120.51708 * 359.97438 * 6 5 4 8 8 C 1.47611 * 119.93063 * 179.97438 * 7 6 5 9 9 O 1.21592 * 119.99434 * 180.02562 * 8 7 6 10 10 N 1.34771 * 120.00356 * 0.02562 * 8 7 6 11 11 C 1.46508 * 119.99837 * 180.02562 * 10 8 7 12 12 H 1.08994 * 109.47317 * 35.00152 * 11 10 8 13 13 C 1.52999 * 109.46657 * 274.99636 * 11 10 8 14 14 C 1.53002 * 109.46662 * 155.00121 * 11 10 8 15 15 C 1.53003 * 109.47269 * 294.99336 * 14 11 10 16 16 H 1.09000 * 109.46953 * 305.00936 * 15 14 11 17 17 C 1.52996 * 109.47332 * 185.00423 * 15 14 11 18 18 N 1.46505 * 109.46807 * 65.00478 * 15 14 11 19 19 C 1.36931 * 119.99788 * 205.00000 * 18 15 14 20 20 H 1.08002 * 120.00438 * 0.02562 * 19 18 15 21 21 C 1.38817 * 119.99680 * 179.72358 * 19 18 15 22 22 N 1.31614 * 119.99888 * 0.27479 * 21 19 18 23 23 Si 1.86803 * 119.99862 * 180.27671 * 21 19 18 24 24 H 1.48508 * 109.46872 * 359.97438 * 23 21 19 25 25 H 1.48494 * 109.47141 * 119.99997 * 23 21 19 26 26 H 1.48498 * 109.47018 * 240.00044 * 23 21 19 27 27 C 1.39372 * 120.12988 * 0.23909 * 7 6 5 28 28 C 1.38409 * 119.57300 * 359.51413 * 27 7 6 29 29 N 1.35851 * 124.92806 * 180.02562 * 2 1 3 30 30 C 1.46501 * 126.36235 * 359.97438 * 29 2 1 31 31 H 1.08999 * 109.46654 * 269.96047 * 1 2 3 32 32 H 1.08998 * 109.46842 * 29.95907 * 1 2 3 33 33 H 1.09000 * 109.46967 * 149.95705 * 1 2 3 34 34 H 1.07998 * 119.96578 * 359.97438 * 5 4 3 35 35 H 1.08003 * 119.73782 * 179.97438 * 6 5 4 36 36 H 0.96999 * 120.00044 * 359.97438 * 10 8 7 37 37 H 1.08998 * 109.47359 * 299.99941 * 13 11 10 38 38 H 1.09002 * 109.46944 * 60.00616 * 13 11 10 39 39 H 1.09010 * 109.46692 * 179.97438 * 13 11 10 40 40 H 1.09000 * 109.46766 * 174.99852 * 14 11 10 41 41 H 1.08992 * 109.47398 * 54.99945 * 14 11 10 42 42 H 1.09002 * 109.46807 * 300.00318 * 17 15 14 43 43 H 1.08998 * 109.47019 * 59.99816 * 17 15 14 44 44 H 1.08998 * 109.47099 * 180.02562 * 17 15 14 45 45 H 0.97000 * 119.99792 * 24.99795 * 18 15 14 46 46 H 0.97005 * 119.99715 * 179.97438 * 22 21 19 47 47 H 1.07999 * 120.20979 * 179.71326 * 27 7 6 48 48 H 1.09005 * 109.47142 * 269.97127 * 30 29 2 49 49 H 1.08999 * 109.47669 * 29.97744 * 30 29 2 50 50 H 1.09007 * 109.46869 * 149.97961 * 30 29 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2526 1.0677 0.0000 4 6 3.5605 0.7119 -0.0006 5 6 4.7559 1.4410 -0.0004 6 6 5.9523 0.7903 -0.0016 7 6 6.0006 -0.6106 -0.0026 8 6 7.3045 -1.3025 -0.0046 9 8 7.3477 -2.5177 -0.0059 10 7 8.4469 -0.5876 -0.0049 11 6 9.7409 -1.2745 -0.0074 12 1 9.6665 -2.1875 -0.5980 13 6 10.1341 -1.6266 1.4287 14 6 10.8036 -0.3579 -0.6169 15 6 10.4760 -0.1065 -2.0902 16 1 10.3759 -1.0604 -2.6080 17 6 11.6024 0.7063 -2.7316 18 7 9.2183 0.6381 -2.1906 19 6 8.4586 0.5486 -3.3263 20 1 8.7862 -0.0712 -4.1479 21 6 7.2640 1.2496 -3.4192 22 7 6.8644 2.0044 -2.4178 23 14 6.2236 1.1214 -4.9654 24 1 6.8894 0.2161 -5.9363 25 1 4.8859 0.5783 -4.6183 26 1 6.0691 2.4685 -5.5710 27 6 4.8200 -1.3513 -0.0073 28 6 3.6016 -0.6947 -0.0008 29 7 2.2849 -1.1138 -0.0005 30 6 1.8149 -2.5014 -0.0006 31 1 -0.3632 -0.0007 1.0277 32 1 -0.3633 0.8904 -0.5132 33 1 -0.3633 -0.8896 -0.5145 34 1 4.7292 2.5207 0.0000 35 1 6.8710 1.3581 -0.0019 36 1 8.4123 0.3818 -0.0042 37 1 10.2085 -0.7135 2.0193 38 1 9.3770 -2.2796 1.8629 39 1 11.0967 -2.1381 1.4268 40 1 11.7815 -0.8328 -0.5381 41 1 10.8162 0.5908 -0.0805 42 1 11.7025 1.6602 -2.2137 43 1 12.5382 0.1523 -2.6569 44 1 11.3688 0.8857 -3.7811 45 1 8.9238 1.1944 -1.4526 46 1 6.0298 2.4945 -2.4828 47 1 4.8557 -2.4307 -0.0128 48 1 1.6993 -2.8459 1.0271 49 1 0.8551 -2.5600 -0.5137 50 1 2.5411 -3.1309 -0.5152 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001135184357.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:51:52 Heat of formation + Delta-G solvation = 50.980065 kcal Electronic energy + Delta-G solvation = -31560.180914 eV Core-core repulsion = 27588.574936 eV Total energy + Delta-G solvation = -3971.605978 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.85476 -39.39976 -37.07509 -36.26817 -34.15499 -33.96621 -32.33473 -31.40852 -30.46721 -29.94782 -28.52525 -27.41642 -26.76243 -26.29434 -23.61302 -23.07233 -21.79803 -20.82685 -20.21646 -20.00075 -19.43748 -17.43170 -17.14419 -16.77622 -15.99540 -15.86590 -15.48940 -14.85288 -14.45655 -14.20753 -13.82369 -13.77576 -13.65540 -13.45869 -13.25108 -13.16249 -12.98004 -12.88350 -12.69837 -12.62333 -12.44498 -12.12641 -12.01004 -11.86484 -11.69714 -11.63341 -11.02981 -10.96755 -10.81021 -10.75491 -10.66208 -10.33127 -10.19238 -10.04658 -9.86310 -9.64727 -9.61323 -9.23901 -8.92114 -8.33870 -7.83472 -7.58153 -6.87430 -5.76292 -2.99325 1.12286 2.07025 2.74105 2.84115 3.46233 3.52570 3.55807 3.68997 3.90193 4.30458 4.57740 4.63547 4.66710 4.72400 5.01956 5.11052 5.18491 5.29457 5.34536 5.39704 5.45917 5.50400 5.56478 5.61149 5.65121 5.71572 5.85892 5.87539 5.89947 5.95139 6.00273 6.03543 6.16642 6.19596 6.27022 6.39575 6.45224 6.59069 6.61947 6.64298 6.83874 6.88535 6.97011 7.08057 7.10053 7.21947 7.32355 7.43240 7.75918 8.18522 8.25985 8.43957 8.95644 9.55971 10.07595 10.43707 11.45958 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.011215 B = 0.004305 C = 0.003473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2496.086595 B = 6502.510258 C = 8059.212132 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.270 3.730 3 N -0.497 5.497 4 C 0.070 3.930 5 C -0.071 4.071 6 C -0.029 4.029 7 C -0.112 4.112 8 C 0.575 3.425 9 O -0.567 6.567 10 N -0.691 5.691 11 C 0.150 3.850 12 H 0.083 0.917 13 C -0.162 4.162 14 C -0.134 4.134 15 C 0.169 3.831 16 H 0.047 0.953 17 C -0.163 4.163 18 N -0.715 5.715 19 C -0.229 4.229 20 H 0.066 0.934 21 C -0.003 4.003 22 N -0.921 5.921 23 Si 0.896 3.104 24 H -0.285 1.285 25 H -0.295 1.295 26 H -0.294 1.294 27 C -0.055 4.055 28 C 0.023 3.977 29 N -0.494 5.494 30 C 0.080 3.920 31 H 0.084 0.916 32 H 0.093 0.907 33 H 0.075 0.925 34 H 0.128 0.872 35 H 0.143 0.857 36 H 0.404 0.596 37 H 0.053 0.947 38 H 0.057 0.943 39 H 0.059 0.941 40 H 0.073 0.927 41 H 0.064 0.936 42 H 0.045 0.955 43 H 0.034 0.966 44 H 0.052 0.948 45 H 0.376 0.624 46 H 0.255 0.745 47 H 0.125 0.875 48 H 0.072 0.928 49 H 0.084 0.916 50 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.954 -5.747 9.233 11.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.005 3.995 3 N -0.218 5.218 4 C -0.048 4.048 5 C -0.091 4.091 6 C -0.050 4.050 7 C -0.116 4.116 8 C 0.364 3.636 9 O -0.448 6.448 10 N -0.343 5.343 11 C 0.045 3.955 12 H 0.101 0.899 13 C -0.221 4.221 14 C -0.173 4.173 15 C 0.059 3.941 16 H 0.065 0.935 17 C -0.223 4.223 18 N -0.358 5.358 19 C -0.360 4.360 20 H 0.084 0.916 21 C -0.199 4.199 22 N -0.570 5.570 23 Si 0.728 3.272 24 H -0.210 1.210 25 H -0.222 1.222 26 H -0.221 1.221 27 C -0.077 4.077 28 C -0.084 4.084 29 N -0.186 5.186 30 C -0.062 4.062 31 H 0.103 0.897 32 H 0.112 0.888 33 H 0.094 0.906 34 H 0.146 0.854 35 H 0.160 0.840 36 H 0.243 0.757 37 H 0.072 0.928 38 H 0.076 0.924 39 H 0.078 0.922 40 H 0.092 0.908 41 H 0.083 0.917 42 H 0.064 0.936 43 H 0.053 0.947 44 H 0.071 0.929 45 H 0.211 0.789 46 H 0.066 0.934 47 H 0.143 0.857 48 H 0.090 0.910 49 H 0.102 0.898 50 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -5.269 -5.935 9.048 12.036 hybrid contribution -0.514 -0.245 -1.054 1.198 sum -5.783 -6.180 7.995 11.642 Atomic orbital electron populations 1.20309 0.84806 1.04270 1.03721 1.23511 0.95512 0.81021 0.99407 1.70324 1.01405 1.27167 1.22928 1.19204 0.91813 0.90239 1.03559 1.19780 0.88537 0.99688 1.01090 1.20739 0.98426 0.92129 0.93748 1.19564 0.92272 0.93971 1.05833 1.17918 0.84019 0.86469 0.75213 1.90669 1.87966 1.13841 1.52311 1.45864 1.04571 1.10553 1.73351 1.20805 0.82769 0.96460 0.95453 0.89905 1.22211 1.01227 1.01418 0.97215 1.22217 0.97706 0.99428 0.97913 1.20279 0.87171 0.94694 0.91922 0.93477 1.22418 0.97958 1.00203 1.01748 1.42429 1.20385 1.54672 1.18354 1.19169 1.00351 1.22550 0.93971 0.91646 1.24474 0.97823 1.00194 0.97449 1.69486 1.23557 1.33607 1.30332 0.86282 0.80673 0.76938 0.83291 1.21042 1.22190 1.22124 1.19788 0.88077 0.99361 1.00500 1.18607 0.84825 0.95229 1.09708 1.44949 1.04776 1.07099 1.61782 1.21914 1.01379 0.79833 1.03097 0.89722 0.88807 0.90616 0.85400 0.83969 0.75669 0.92766 0.92400 0.92178 0.90825 0.91724 0.93614 0.94657 0.92897 0.78881 0.93427 0.85704 0.90984 0.89773 0.89759 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.67 10.17 36.01 0.37 -0.30 16 2 C 0.27 4.06 7.85 -154.90 -1.22 2.84 16 3 N -0.50 -9.32 11.26 -8.18 -0.09 -9.41 16 4 C 0.07 1.41 7.23 -84.62 -0.61 0.80 16 5 C -0.07 -1.41 10.03 -39.65 -0.40 -1.81 16 6 C -0.03 -0.57 7.72 -39.59 -0.31 -0.88 16 7 C -0.11 -2.26 5.88 -104.93 -0.62 -2.88 16 8 C 0.58 11.82 7.73 -12.44 -0.10 11.73 16 9 O -0.57 -12.75 15.99 5.28 0.08 -12.67 16 10 N -0.69 -12.53 3.75 -54.82 -0.21 -12.74 16 11 C 0.15 2.41 2.57 -67.93 -0.17 2.24 16 12 H 0.08 1.51 7.58 -51.93 -0.39 1.12 16 13 C -0.16 -2.18 9.48 37.16 0.35 -1.83 16 14 C -0.13 -1.98 4.43 -26.73 -0.12 -2.10 16 15 C 0.17 3.11 2.89 -67.93 -0.20 2.91 16 16 H 0.05 0.94 8.08 -51.93 -0.42 0.52 16 17 C -0.16 -2.77 9.49 37.16 0.35 -2.41 16 18 N -0.72 -15.79 3.84 -53.42 -0.21 -16.00 16 19 C -0.23 -5.92 9.93 -15.06 -0.15 -6.07 16 20 H 0.07 1.74 7.83 -52.49 -0.41 1.33 16 21 C 0.00 -0.08 5.50 -17.43 -0.10 -0.18 16 22 N -0.92 -23.89 10.67 55.49 0.59 -23.30 16 23 Si 0.90 22.56 29.55 -169.99 -5.02 17.53 16 24 H -0.28 -7.12 7.11 56.52 0.40 -6.72 16 25 H -0.29 -7.79 7.11 56.52 0.40 -7.39 16 26 H -0.29 -7.49 7.11 56.52 0.40 -7.09 16 27 C -0.06 -1.07 9.58 -39.10 -0.37 -1.44 16 28 C 0.02 0.42 6.86 -84.00 -0.58 -0.15 16 29 N -0.49 -7.43 3.20 -118.54 -0.38 -7.81 16 30 C 0.08 0.79 10.96 59.85 0.66 1.44 16 31 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 33 H 0.08 0.51 7.01 -51.93 -0.36 0.15 16 34 H 0.13 2.42 8.06 -52.49 -0.42 2.00 16 35 H 0.14 2.80 5.80 -52.48 -0.30 2.49 16 36 H 0.40 7.31 4.50 -40.82 -0.18 7.12 16 37 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 38 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 39 H 0.06 0.68 8.14 -51.92 -0.42 0.26 16 40 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 41 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 42 H 0.04 0.77 8.14 -51.93 -0.42 0.34 16 43 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 44 H 0.05 0.99 8.14 -51.93 -0.42 0.56 16 45 H 0.38 8.39 5.70 -40.82 -0.23 8.15 16 46 H 0.26 6.77 8.31 -40.82 -0.34 6.43 16 47 H 0.13 2.28 7.64 -52.49 -0.40 1.88 16 48 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 49 H 0.08 0.59 6.99 -51.93 -0.36 0.22 16 50 H 0.08 0.84 8.14 -51.92 -0.42 0.42 16 LS Contribution 403.11 15.07 6.07 6.07 Total: -1.00 -32.00 403.11 -10.06 -42.06 By element: Atomic # 1 Polarization: 22.04 SS G_CDS: -7.70 Total: 14.34 kcal Atomic # 6 Polarization: 5.12 SS G_CDS: -3.20 Total: 1.92 kcal Atomic # 7 Polarization: -68.96 SS G_CDS: -0.29 Total: -69.25 kcal Atomic # 8 Polarization: -12.75 SS G_CDS: 0.08 Total: -12.67 kcal Atomic # 14 Polarization: 22.56 SS G_CDS: -5.02 Total: 17.53 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -32.00 -10.06 -42.06 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135184357.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.041 kcal (2) G-P(sol) polarization free energy of solvation -31.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.042 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.061 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.980 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds