Wall clock time and date at job start Wed Apr 1 2020 02:51:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 N 1.30223 * 124.92392 * 2 1 4 4 C 1.35549 * 109.70563 * 180.02562 * 3 2 1 5 5 C 1.40016 * 133.40040 * 180.02562 * 4 3 2 6 6 C 1.36193 * 120.07660 * 180.02562 * 5 4 3 7 7 C 1.40167 * 120.51708 * 359.97438 * 6 5 4 8 8 C 1.47611 * 119.93063 * 179.97438 * 7 6 5 9 9 O 1.21592 * 119.99434 * 180.02562 * 8 7 6 10 10 N 1.34771 * 120.00356 * 0.02562 * 8 7 6 11 11 C 1.46508 * 119.99837 * 180.02562 * 10 8 7 12 12 H 1.08994 * 109.47317 * 35.00152 * 11 10 8 13 13 C 1.52999 * 109.46657 * 274.99636 * 11 10 8 14 14 C 1.53002 * 109.46662 * 155.00121 * 11 10 8 15 15 C 1.53003 * 109.47269 * 294.99336 * 14 11 10 16 16 H 1.09000 * 109.46953 * 305.00936 * 15 14 11 17 17 C 1.52996 * 109.47332 * 185.00423 * 15 14 11 18 18 N 1.46505 * 109.46807 * 65.00478 * 15 14 11 19 19 C 1.36931 * 119.99788 * 205.00000 * 18 15 14 20 20 H 1.08002 * 120.00438 * 0.02562 * 19 18 15 21 21 C 1.38817 * 119.99680 * 179.72358 * 19 18 15 22 22 N 1.31614 * 119.99888 * 0.27479 * 21 19 18 23 23 Si 1.86803 * 119.99862 * 180.27671 * 21 19 18 24 24 H 1.48508 * 109.46872 * 359.97438 * 23 21 19 25 25 H 1.48494 * 109.47141 * 119.99997 * 23 21 19 26 26 H 1.48498 * 109.47018 * 240.00044 * 23 21 19 27 27 C 1.39372 * 120.12988 * 0.23909 * 7 6 5 28 28 C 1.38409 * 119.57300 * 359.51413 * 27 7 6 29 29 N 1.35851 * 124.92806 * 180.02562 * 2 1 3 30 30 C 1.46501 * 126.36235 * 359.97438 * 29 2 1 31 31 H 1.08999 * 109.46654 * 269.96047 * 1 2 3 32 32 H 1.08998 * 109.46842 * 29.95907 * 1 2 3 33 33 H 1.09000 * 109.46967 * 149.95705 * 1 2 3 34 34 H 1.07998 * 119.96578 * 359.97438 * 5 4 3 35 35 H 1.08003 * 119.73782 * 179.97438 * 6 5 4 36 36 H 0.96999 * 120.00044 * 359.97438 * 10 8 7 37 37 H 1.08998 * 109.47359 * 299.99941 * 13 11 10 38 38 H 1.09002 * 109.46944 * 60.00616 * 13 11 10 39 39 H 1.09010 * 109.46692 * 179.97438 * 13 11 10 40 40 H 1.09000 * 109.46766 * 174.99852 * 14 11 10 41 41 H 1.08992 * 109.47398 * 54.99945 * 14 11 10 42 42 H 1.09002 * 109.46807 * 300.00318 * 17 15 14 43 43 H 1.08998 * 109.47019 * 59.99816 * 17 15 14 44 44 H 1.08998 * 109.47099 * 180.02562 * 17 15 14 45 45 H 0.97000 * 119.99792 * 24.99795 * 18 15 14 46 46 H 0.97005 * 119.99715 * 179.97438 * 22 21 19 47 47 H 1.07999 * 120.20979 * 179.71326 * 27 7 6 48 48 H 1.09005 * 109.47142 * 269.97127 * 30 29 2 49 49 H 1.08999 * 109.47669 * 29.97744 * 30 29 2 50 50 H 1.09007 * 109.46869 * 149.97961 * 30 29 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2526 1.0677 0.0000 4 6 3.5605 0.7119 -0.0006 5 6 4.7559 1.4410 -0.0004 6 6 5.9523 0.7903 -0.0016 7 6 6.0006 -0.6106 -0.0026 8 6 7.3045 -1.3025 -0.0046 9 8 7.3477 -2.5177 -0.0059 10 7 8.4469 -0.5876 -0.0049 11 6 9.7409 -1.2745 -0.0074 12 1 9.6665 -2.1875 -0.5980 13 6 10.1341 -1.6266 1.4287 14 6 10.8036 -0.3579 -0.6169 15 6 10.4760 -0.1065 -2.0902 16 1 10.3759 -1.0604 -2.6080 17 6 11.6024 0.7063 -2.7316 18 7 9.2183 0.6381 -2.1906 19 6 8.4586 0.5486 -3.3263 20 1 8.7862 -0.0712 -4.1479 21 6 7.2640 1.2496 -3.4192 22 7 6.8644 2.0044 -2.4178 23 14 6.2236 1.1214 -4.9654 24 1 6.8894 0.2161 -5.9363 25 1 4.8859 0.5783 -4.6183 26 1 6.0691 2.4685 -5.5710 27 6 4.8200 -1.3513 -0.0073 28 6 3.6016 -0.6947 -0.0008 29 7 2.2849 -1.1138 -0.0005 30 6 1.8149 -2.5014 -0.0006 31 1 -0.3632 -0.0007 1.0277 32 1 -0.3633 0.8904 -0.5132 33 1 -0.3633 -0.8896 -0.5145 34 1 4.7292 2.5207 0.0000 35 1 6.8710 1.3581 -0.0019 36 1 8.4123 0.3818 -0.0042 37 1 10.2085 -0.7135 2.0193 38 1 9.3770 -2.2796 1.8629 39 1 11.0967 -2.1381 1.4268 40 1 11.7815 -0.8328 -0.5381 41 1 10.8162 0.5908 -0.0805 42 1 11.7025 1.6602 -2.2137 43 1 12.5382 0.1523 -2.6569 44 1 11.3688 0.8857 -3.7811 45 1 8.9238 1.1944 -1.4526 46 1 6.0298 2.4945 -2.4828 47 1 4.8557 -2.4307 -0.0128 48 1 1.6993 -2.8459 1.0271 49 1 0.8551 -2.5600 -0.5137 50 1 2.5411 -3.1309 -0.5152 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001135184357.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:51:51 Heat of formation + Delta-G solvation = 32.715500 kcal Electronic energy + Delta-G solvation = -31560.972925 eV Core-core repulsion = 27588.574936 eV Total energy + Delta-G solvation = -3972.397989 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -43.15266 -40.91016 -38.51872 -37.77968 -35.75136 -35.19725 -34.04361 -32.69313 -31.81375 -31.32662 -30.18776 -28.62606 -27.80469 -27.55223 -25.51198 -24.49081 -23.15393 -22.23631 -21.65996 -21.34715 -20.79823 -19.06579 -18.80347 -18.09487 -17.41465 -17.00535 -16.90703 -16.61352 -15.97292 -15.69905 -15.46971 -15.29814 -15.06162 -14.78014 -14.41275 -14.30129 -14.24684 -14.17384 -13.88839 -13.79224 -13.55498 -13.37127 -13.27600 -13.18113 -13.05672 -12.92337 -12.78143 -12.58854 -12.40649 -12.29311 -12.11868 -12.08726 -11.67748 -11.56195 -11.37298 -11.32661 -10.99650 -10.85915 -10.81261 -9.85339 -9.24749 -9.00912 -8.72064 -7.80038 -4.98787 -0.30520 0.57978 1.39476 1.45368 1.48603 1.51977 1.61968 2.18953 2.47315 2.61000 3.05076 3.21935 3.52855 3.55131 3.79563 3.84686 3.95338 4.06340 4.12207 4.21639 4.30196 4.37259 4.38893 4.39921 4.45406 4.60581 4.61039 4.69162 4.72191 4.73100 4.76731 4.87431 4.91285 4.95312 5.02594 5.11664 5.17306 5.19687 5.24932 5.38716 5.40578 5.46117 5.48474 5.61178 5.65811 5.67625 5.80610 5.91392 6.22723 6.42285 6.73900 6.88099 7.40536 7.52459 8.23195 8.50928 9.39162 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.011215 B = 0.004305 C = 0.003473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2496.086595 B = 6502.510258 C = 8059.212132 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C 0.284 3.716 3 N -0.541 5.541 4 C 0.052 3.948 5 C -0.087 4.087 6 C -0.026 4.026 7 C -0.136 4.136 8 C 0.570 3.430 9 O -0.595 6.595 10 N -0.684 5.684 11 C 0.145 3.855 12 H 0.058 0.942 13 C -0.152 4.152 14 C -0.120 4.120 15 C 0.162 3.838 16 H 0.028 0.972 17 C -0.153 4.153 18 N -0.718 5.718 19 C -0.227 4.227 20 H 0.052 0.948 21 C -0.039 4.039 22 N -0.918 5.918 23 Si 0.929 3.071 24 H -0.283 1.283 25 H -0.315 1.315 26 H -0.297 1.297 27 C -0.056 4.056 28 C 0.008 3.992 29 N -0.492 5.492 30 C 0.069 3.931 31 H 0.110 0.890 32 H 0.096 0.904 33 H 0.108 0.892 34 H 0.127 0.873 35 H 0.138 0.862 36 H 0.405 0.595 37 H 0.068 0.932 38 H 0.038 0.962 39 H 0.087 0.913 40 H 0.110 0.890 41 H 0.077 0.923 42 H 0.048 0.952 43 H 0.068 0.932 44 H 0.027 0.973 45 H 0.375 0.625 46 H 0.247 0.753 47 H 0.130 0.870 48 H 0.094 0.906 49 H 0.121 0.879 50 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.248 -6.622 10.240 13.276 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.019 3.981 3 N -0.264 5.264 4 C -0.067 4.067 5 C -0.107 4.107 6 C -0.047 4.047 7 C -0.141 4.141 8 C 0.358 3.642 9 O -0.479 6.479 10 N -0.335 5.335 11 C 0.041 3.959 12 H 0.076 0.924 13 C -0.210 4.210 14 C -0.158 4.158 15 C 0.053 3.947 16 H 0.046 0.954 17 C -0.213 4.213 18 N -0.361 5.361 19 C -0.359 4.359 20 H 0.070 0.930 21 C -0.234 4.234 22 N -0.568 5.568 23 Si 0.763 3.237 24 H -0.208 1.208 25 H -0.244 1.244 26 H -0.224 1.224 27 C -0.077 4.077 28 C -0.099 4.099 29 N -0.183 5.183 30 C -0.071 4.071 31 H 0.129 0.871 32 H 0.115 0.885 33 H 0.127 0.873 34 H 0.144 0.856 35 H 0.156 0.844 36 H 0.244 0.756 37 H 0.087 0.913 38 H 0.057 0.943 39 H 0.106 0.894 40 H 0.128 0.872 41 H 0.096 0.904 42 H 0.067 0.933 43 H 0.087 0.913 44 H 0.047 0.953 45 H 0.210 0.790 46 H 0.057 0.943 47 H 0.147 0.853 48 H 0.113 0.887 49 H 0.139 0.861 50 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -5.528 -6.836 10.058 13.359 hybrid contribution -0.524 -0.045 -1.368 1.466 sum -6.052 -6.880 8.690 12.629 Atomic orbital electron populations 1.20629 0.80336 1.06050 1.05893 1.24675 0.97653 0.80108 0.95668 1.70335 1.01013 1.29255 1.25748 1.19483 0.92573 0.91132 1.03532 1.19841 0.89019 0.99752 1.02111 1.20614 0.98214 0.91960 0.93930 1.19674 0.92664 0.94255 1.07458 1.18064 0.84750 0.86249 0.75109 1.90633 1.88385 1.14801 1.54057 1.45922 1.04922 1.10485 1.72141 1.20994 0.82165 0.95603 0.97163 0.92422 1.22113 1.01912 1.02013 0.94967 1.22141 0.98726 1.00079 0.94899 1.20492 0.86110 0.93500 0.94576 0.95395 1.22266 0.98643 1.00500 0.99890 1.42472 1.21474 1.55040 1.17147 1.19185 1.00556 1.21497 0.94699 0.92994 1.24803 0.98752 1.01280 0.98602 1.69544 1.23068 1.33879 1.30290 0.85746 0.79053 0.76432 0.82450 1.20813 1.24360 1.22445 1.19878 0.88315 0.99537 1.00011 1.18689 0.86327 0.94958 1.09966 1.45315 1.03260 1.09189 1.60535 1.22348 1.02770 0.76862 1.05122 0.87129 0.88500 0.87316 0.85554 0.84406 0.75645 0.91258 0.94259 0.89404 0.87177 0.90406 0.93266 0.91311 0.95341 0.79034 0.94321 0.85263 0.88738 0.86096 0.90257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.04 10.17 71.24 0.72 -0.32 16 2 C 0.28 8.04 7.85 137.95 1.08 9.12 16 3 N -0.54 -20.34 11.26 -179.80 -2.03 -22.37 16 4 C 0.05 2.13 7.23 39.61 0.29 2.42 16 5 C -0.09 -3.64 10.03 22.22 0.22 -3.41 16 6 C -0.03 -1.07 7.72 22.26 0.17 -0.89 16 7 C -0.14 -5.72 5.88 -20.06 -0.12 -5.84 16 8 C 0.57 24.17 7.73 86.72 0.67 24.84 16 9 O -0.59 -27.63 15.99 -4.01 -0.06 -27.70 16 10 N -0.68 -25.10 3.75 -445.61 -1.67 -26.77 16 11 C 0.14 4.53 2.57 44.99 0.12 4.64 16 12 H 0.06 2.11 7.58 -2.39 -0.02 2.09 16 13 C -0.15 -3.78 9.48 71.98 0.68 -3.10 16 14 C -0.12 -3.26 4.43 30.60 0.14 -3.12 16 15 C 0.16 5.77 2.89 44.99 0.13 5.90 16 16 H 0.03 1.11 8.08 -2.39 -0.02 1.09 16 17 C -0.15 -4.90 9.49 71.98 0.68 -4.22 16 18 N -0.72 -31.83 3.84 -322.93 -1.24 -33.07 16 19 C -0.23 -11.90 9.93 84.04 0.83 -11.07 16 20 H 0.05 2.83 7.83 -2.91 -0.02 2.81 16 21 C -0.04 -2.11 5.50 84.86 0.47 -1.64 16 22 N -0.92 -48.76 10.67 21.65 0.23 -48.53 16 23 Si 0.93 47.29 29.55 68.60 2.03 49.32 16 24 H -0.28 -14.12 7.11 99.48 0.71 -13.41 16 25 H -0.31 -16.96 7.11 99.48 0.71 -16.26 16 26 H -0.30 -15.12 7.11 99.48 0.71 -14.41 16 27 C -0.06 -2.21 9.58 22.58 0.22 -1.99 16 28 C 0.01 0.32 6.86 38.79 0.27 0.58 16 29 N -0.49 -14.08 3.20 -528.95 -1.70 -15.78 16 30 C 0.07 1.17 10.96 127.77 1.40 2.57 16 31 H 0.11 1.15 8.14 -2.39 -0.02 1.13 16 32 H 0.10 1.44 8.14 -2.39 -0.02 1.42 16 33 H 0.11 0.91 7.01 -2.39 -0.02 0.89 16 34 H 0.13 5.10 8.06 -2.91 -0.02 5.07 16 35 H 0.14 5.68 5.80 -2.91 -0.02 5.66 16 36 H 0.40 14.82 4.50 -92.71 -0.42 14.40 16 37 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 38 H 0.04 1.13 8.14 -2.39 -0.02 1.11 16 39 H 0.09 1.71 8.14 -2.38 -0.02 1.69 16 40 H 0.11 2.26 8.14 -2.39 -0.02 2.24 16 41 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 42 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 43 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 44 H 0.03 1.02 8.14 -2.39 -0.02 1.01 16 45 H 0.37 16.77 5.70 -92.71 -0.53 16.24 16 46 H 0.25 13.46 8.31 -92.70 -0.77 12.69 16 47 H 0.13 4.87 7.64 -2.91 -0.02 4.85 16 48 H 0.09 1.21 8.14 -2.38 -0.02 1.19 16 49 H 0.12 1.15 6.99 -2.39 -0.02 1.13 16 50 H 0.08 1.45 8.14 -2.38 -0.02 1.43 16 Total: -1.00 -73.19 403.11 3.55 -69.65 By element: Atomic # 1 Polarization: 40.74 SS G_CDS: 0.01 Total: 40.76 kcal Atomic # 6 Polarization: 6.50 SS G_CDS: 7.97 Total: 14.48 kcal Atomic # 7 Polarization: -140.11 SS G_CDS: -6.40 Total: -146.51 kcal Atomic # 8 Polarization: -27.63 SS G_CDS: -0.06 Total: -27.70 kcal Atomic # 14 Polarization: 47.29 SS G_CDS: 2.03 Total: 49.32 kcal Total: -73.19 3.55 -69.65 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135184357.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.363 kcal (2) G-P(sol) polarization free energy of solvation -73.195 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.168 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.547 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.647 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.716 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds