Wall clock time and date at job start Wed Apr 1 2020 02:51:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 N 1.30233 * 124.92105 * 2 1 4 4 C 1.35548 * 109.70351 * 180.02562 * 3 2 1 5 5 C 1.40016 * 133.40436 * 179.97438 * 4 3 2 6 6 C 1.36184 * 120.08592 * 180.02562 * 5 4 3 7 7 C 1.40172 * 120.51235 * 0.02562 * 6 5 4 8 8 C 1.47608 * 119.93408 * 179.97438 * 7 6 5 9 9 O 1.21592 * 120.00102 * 180.02562 * 8 7 6 10 10 N 1.34784 * 120.00320 * 0.02562 * 8 7 6 11 11 C 1.46497 * 120.00075 * 180.02562 * 10 8 7 12 12 H 1.08996 * 109.47049 * 324.99133 * 11 10 8 13 13 C 1.52997 * 109.47188 * 85.00024 * 11 10 8 14 14 C 1.53006 * 109.46631 * 204.99770 * 11 10 8 15 15 C 1.53005 * 109.46991 * 65.00087 * 14 11 10 16 16 H 1.08996 * 109.46875 * 304.99826 * 15 14 11 17 17 C 1.53002 * 109.46855 * 184.99526 * 15 14 11 18 18 N 1.46500 * 109.47012 * 64.99831 * 15 14 11 19 19 C 1.36933 * 119.99729 * 204.99734 * 18 15 14 20 20 H 1.07998 * 120.00234 * 359.97438 * 19 18 15 21 21 C 1.38813 * 120.00098 * 180.02562 * 19 18 15 22 22 N 1.31629 * 119.99884 * 359.97438 * 21 19 18 23 23 Si 1.86801 * 120.00310 * 180.02562 * 21 19 18 24 24 H 1.48499 * 109.46906 * 359.97438 * 23 21 19 25 25 H 1.48503 * 109.47334 * 119.99998 * 23 21 19 26 26 H 1.48506 * 109.46776 * 239.99836 * 23 21 19 27 27 C 1.39373 * 120.13025 * 0.23161 * 7 6 5 28 28 C 1.38414 * 119.57213 * 359.51468 * 27 7 6 29 29 N 1.35853 * 124.93160 * 180.02562 * 2 1 3 30 30 C 1.46501 * 126.36300 * 359.97438 * 29 2 1 31 31 H 1.09004 * 109.47124 * 269.95504 * 1 2 3 32 32 H 1.09001 * 109.47706 * 29.95961 * 1 2 3 33 33 H 1.09002 * 109.47128 * 149.95730 * 1 2 3 34 34 H 1.08005 * 119.95944 * 0.02562 * 5 4 3 35 35 H 1.07994 * 119.74877 * 179.97438 * 6 5 4 36 36 H 0.96996 * 119.99132 * 359.97438 * 10 8 7 37 37 H 1.09002 * 109.47153 * 299.99573 * 13 11 10 38 38 H 1.09001 * 109.46832 * 179.97438 * 13 11 10 39 39 H 1.09004 * 109.47261 * 59.99745 * 13 11 10 40 40 H 1.08996 * 109.46945 * 184.99666 * 14 11 10 41 41 H 1.09000 * 109.47314 * 304.99788 * 14 11 10 42 42 H 1.08993 * 109.47136 * 300.00416 * 17 15 14 43 43 H 1.09002 * 109.46804 * 60.00365 * 17 15 14 44 44 H 1.08998 * 109.47168 * 179.97438 * 17 15 14 45 45 H 0.96997 * 120.00262 * 24.99729 * 18 15 14 46 46 H 0.96999 * 120.00024 * 179.97438 * 22 21 19 47 47 H 1.08007 * 120.21140 * 179.71929 * 27 7 6 48 48 H 1.08994 * 109.47073 * 269.97635 * 30 29 2 49 49 H 1.09004 * 109.47201 * 29.97260 * 30 29 2 50 50 H 1.08997 * 109.47161 * 149.96653 * 30 29 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2524 1.0678 0.0000 4 6 3.5604 0.7120 -0.0006 5 6 4.7558 1.4411 -0.0013 6 6 5.9522 0.7905 -0.0023 7 6 6.0005 -0.6104 -0.0031 8 6 7.3043 -1.3024 -0.0048 9 8 7.3477 -2.5175 -0.0060 10 7 8.4469 -0.5874 -0.0049 11 6 9.7408 -1.2742 -0.0071 12 1 9.6677 -2.1888 0.5813 13 6 10.1310 -1.6224 -1.4450 14 6 10.8048 -0.3593 0.6027 15 6 10.4803 -0.1119 2.0773 16 1 9.4673 0.2806 2.1655 17 6 11.4716 0.9004 2.6548 18 7 10.5821 -1.3719 2.8177 19 6 9.8774 -1.5422 3.9794 20 1 9.2470 -0.7475 4.3500 21 6 9.9741 -2.7359 4.6813 22 7 10.7429 -3.7043 4.2299 23 14 9.0123 -2.9684 6.2657 24 1 8.2290 -1.7402 6.5540 25 1 8.0888 -4.1222 6.1194 26 1 9.9550 -3.2276 7.3835 27 6 4.8200 -1.3511 -0.0079 28 6 3.6015 -0.6945 -0.0015 29 7 2.2848 -1.1138 -0.0005 30 6 1.8150 -2.5014 -0.0006 31 1 -0.3633 -0.0008 1.0277 32 1 -0.3634 0.8903 -0.5132 33 1 -0.3633 -0.8896 -0.5145 34 1 4.7290 2.5208 -0.0010 35 1 6.8709 1.3582 -0.0032 36 1 8.4122 0.3820 -0.0043 37 1 9.3730 -2.2742 -1.8794 38 1 11.0940 -2.1331 -1.4466 39 1 10.2041 -0.7077 -2.0333 40 1 11.7825 -0.8340 0.5206 41 1 10.8163 0.5910 0.0688 42 1 12.4846 0.5079 2.5665 43 1 11.3959 1.8379 2.1039 44 1 11.2402 1.0770 3.7052 45 1 11.1485 -2.0856 2.4851 46 1 10.8108 -4.5383 4.7206 47 1 4.8557 -2.4306 -0.0131 48 1 1.6992 -2.8459 1.0270 49 1 0.8550 -2.5600 -0.5137 50 1 2.5409 -3.1308 -0.5153 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001135184358.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:51:56 Heat of formation + Delta-G solvation = 41.324729 kcal Electronic energy + Delta-G solvation = -30173.282905 eV Core-core repulsion = 26201.258240 eV Total energy + Delta-G solvation = -3972.024665 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.39497 -39.72764 -37.39787 -36.54379 -34.50513 -34.38296 -32.28531 -31.78098 -30.70725 -30.47129 -28.55997 -27.89176 -27.21186 -26.26769 -23.69828 -23.41032 -22.36789 -21.17747 -20.52256 -20.08295 -19.66081 -17.99321 -17.36877 -17.10380 -16.32097 -16.30850 -15.79761 -14.93648 -14.78559 -14.39495 -14.30356 -13.98410 -13.77801 -13.76066 -13.66028 -13.58212 -13.33473 -13.19525 -12.92371 -12.82930 -12.66179 -12.55927 -12.11371 -11.96234 -11.69512 -11.62807 -11.55164 -11.39510 -10.98454 -10.79815 -10.58167 -10.55580 -10.37001 -10.15707 -10.15261 -9.83259 -9.60104 -9.56121 -8.83129 -8.69144 -8.48685 -8.18395 -6.86350 -5.68026 -2.95451 0.56781 1.30380 2.28914 2.36717 3.22649 3.46446 3.48441 3.53953 3.55856 3.84383 3.96033 4.22646 4.35382 4.66874 4.72006 4.78795 4.84479 4.91426 5.04501 5.06535 5.13863 5.17934 5.19286 5.38974 5.41697 5.46291 5.50794 5.54181 5.66838 5.74457 5.93905 5.97358 5.99790 6.06571 6.18655 6.21099 6.27237 6.31570 6.34439 6.41369 6.49576 6.61474 6.64039 6.77174 6.85805 6.87671 6.98723 7.12739 7.65661 7.78564 7.85520 8.50494 8.58454 9.61959 10.19556 10.53723 11.54869 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.010042 B = 0.003102 C = 0.002708 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2787.747144 B = 9024.867413 C =10335.892689 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.283 3.717 3 N -0.497 5.497 4 C 0.069 3.931 5 C -0.074 4.074 6 C -0.094 4.094 7 C -0.112 4.112 8 C 0.562 3.438 9 O -0.532 6.532 10 N -0.709 5.709 11 C 0.144 3.856 12 H 0.107 0.893 13 C -0.161 4.161 14 C -0.131 4.131 15 C 0.171 3.829 16 H 0.046 0.954 17 C -0.165 4.165 18 N -0.720 5.720 19 C -0.231 4.231 20 H 0.067 0.933 21 C -0.013 4.013 22 N -0.932 5.932 23 Si 0.901 3.099 24 H -0.282 1.282 25 H -0.293 1.293 26 H -0.293 1.293 27 C -0.042 4.042 28 C 0.033 3.967 29 N -0.489 5.489 30 C 0.075 3.925 31 H 0.089 0.911 32 H 0.096 0.904 33 H 0.079 0.921 34 H 0.134 0.866 35 H 0.133 0.867 36 H 0.394 0.606 37 H 0.056 0.944 38 H 0.064 0.936 39 H 0.050 0.950 40 H 0.076 0.924 41 H 0.061 0.939 42 H 0.045 0.955 43 H 0.034 0.966 44 H 0.052 0.948 45 H 0.383 0.617 46 H 0.253 0.747 47 H 0.136 0.864 48 H 0.078 0.922 49 H 0.088 0.912 50 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.568 8.539 -14.276 23.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.018 3.982 3 N -0.218 5.218 4 C -0.051 4.051 5 C -0.093 4.093 6 C -0.115 4.115 7 C -0.117 4.117 8 C 0.348 3.652 9 O -0.410 6.410 10 N -0.361 5.361 11 C 0.040 3.960 12 H 0.124 0.876 13 C -0.219 4.219 14 C -0.170 4.170 15 C 0.061 3.939 16 H 0.064 0.936 17 C -0.225 4.225 18 N -0.362 5.362 19 C -0.362 4.362 20 H 0.085 0.915 21 C -0.209 4.209 22 N -0.580 5.580 23 Si 0.733 3.267 24 H -0.207 1.207 25 H -0.220 1.220 26 H -0.220 1.220 27 C -0.063 4.063 28 C -0.075 4.075 29 N -0.179 5.179 30 C -0.067 4.067 31 H 0.107 0.893 32 H 0.115 0.885 33 H 0.098 0.902 34 H 0.152 0.848 35 H 0.151 0.849 36 H 0.229 0.771 37 H 0.075 0.925 38 H 0.083 0.917 39 H 0.069 0.931 40 H 0.094 0.906 41 H 0.080 0.920 42 H 0.065 0.935 43 H 0.053 0.947 44 H 0.071 0.929 45 H 0.216 0.784 46 H 0.063 0.937 47 H 0.154 0.846 48 H 0.097 0.903 49 H 0.107 0.893 50 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -16.954 8.340 -14.126 23.591 hybrid contribution -0.010 -0.853 0.979 1.298 sum -16.964 7.487 -13.147 22.731 Atomic orbital electron populations 1.20388 0.84249 1.04587 1.04288 1.23657 0.95794 0.80739 0.98005 1.70385 1.00954 1.27212 1.23267 1.19161 0.92059 0.90196 1.03648 1.19864 0.88718 0.99872 1.00857 1.20734 0.97888 0.92956 0.99941 1.19677 0.92995 0.93475 1.05590 1.17953 0.83664 0.87013 0.76540 1.90795 1.87405 1.13371 1.49384 1.45855 1.05720 1.09704 1.74771 1.21051 0.81245 0.97840 0.95862 0.87554 1.22185 1.01731 1.01134 0.96863 1.22177 0.98572 0.98800 0.97437 1.20234 0.96549 0.88368 0.88782 0.93562 1.22456 1.00710 0.98168 1.01209 1.42397 1.55094 1.12695 1.25971 1.19206 1.19623 0.98644 0.98731 0.91462 1.24684 1.00407 0.96596 0.99200 1.69661 1.42569 1.05604 1.40211 0.86198 0.79296 0.77485 0.83739 1.20698 1.22002 1.21997 1.19984 0.87788 1.00277 0.98262 1.18702 0.85172 0.95167 1.08439 1.45109 1.04611 1.07699 1.60478 1.22049 1.01658 0.79070 1.03939 0.89252 0.88512 0.90231 0.84794 0.84892 0.77141 0.92527 0.91719 0.93113 0.90571 0.92018 0.93548 0.94701 0.92927 0.78355 0.93719 0.84621 0.90316 0.89298 0.89347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.42 10.17 36.00 0.37 -0.05 16 2 C 0.28 3.01 7.85 -154.90 -1.22 1.79 16 3 N -0.50 -6.77 11.27 -8.19 -0.09 -6.86 16 4 C 0.07 0.98 7.23 -84.62 -0.61 0.36 16 5 C -0.07 -0.92 10.03 -39.65 -0.40 -1.31 16 6 C -0.09 -1.16 9.46 -39.59 -0.37 -1.53 16 7 C -0.11 -1.68 5.88 -104.93 -0.62 -2.29 16 8 C 0.56 9.78 7.73 -12.43 -0.10 9.68 16 9 O -0.53 -11.42 15.99 5.28 0.08 -11.33 16 10 N -0.71 -10.72 4.40 -54.82 -0.24 -10.96 16 11 C 0.14 2.36 2.52 -67.93 -0.17 2.19 16 12 H 0.11 2.29 7.05 -51.93 -0.37 1.92 16 13 C -0.16 -2.23 9.48 37.16 0.35 -1.88 16 14 C -0.13 -2.01 4.29 -26.73 -0.11 -2.12 16 15 C 0.17 3.26 2.84 -67.93 -0.19 3.06 16 16 H 0.05 0.91 7.56 -51.93 -0.39 0.52 16 17 C -0.17 -2.90 9.49 37.16 0.35 -2.55 16 18 N -0.72 -17.81 4.49 -53.42 -0.24 -18.05 16 19 C -0.23 -6.48 9.93 -15.06 -0.15 -6.63 16 20 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 21 C -0.01 -0.39 5.50 -17.43 -0.10 -0.48 16 22 N -0.93 -28.74 13.06 55.49 0.72 -28.02 16 23 Si 0.90 23.24 29.55 -169.99 -5.02 18.22 16 24 H -0.28 -7.06 7.11 56.52 0.40 -6.66 16 25 H -0.29 -7.66 7.11 56.52 0.40 -7.26 16 26 H -0.29 -7.53 7.11 56.52 0.40 -7.13 16 27 C -0.04 -0.61 9.58 -39.09 -0.37 -0.98 16 28 C 0.03 0.45 6.86 -84.00 -0.58 -0.12 16 29 N -0.49 -5.30 3.20 -118.55 -0.38 -5.68 16 30 C 0.07 0.49 10.96 59.85 0.66 1.15 16 31 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.08 0.25 7.01 -51.93 -0.36 -0.12 16 34 H 0.13 1.37 8.06 -52.48 -0.42 0.95 16 35 H 0.13 1.26 6.36 -52.49 -0.33 0.92 16 36 H 0.39 4.73 6.60 -40.82 -0.27 4.46 16 37 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 38 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 39 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 41 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 42 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 43 H 0.03 0.50 8.14 -51.93 -0.42 0.07 16 44 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 45 H 0.38 10.15 7.80 -40.82 -0.32 9.83 16 46 H 0.25 7.59 8.31 -40.82 -0.34 7.25 16 47 H 0.14 1.98 7.64 -52.48 -0.40 1.58 16 48 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 49 H 0.09 0.31 6.99 -51.93 -0.36 -0.05 16 50 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 LS Contribution 411.99 15.07 6.21 6.21 Total: -1.00 -37.05 411.99 -10.07 -47.12 By element: Atomic # 1 Polarization: 18.93 SS G_CDS: -7.85 Total: 11.08 kcal Atomic # 6 Polarization: 1.53 SS G_CDS: -3.26 Total: -1.73 kcal Atomic # 7 Polarization: -69.34 SS G_CDS: -0.23 Total: -69.56 kcal Atomic # 8 Polarization: -11.42 SS G_CDS: 0.08 Total: -11.33 kcal Atomic # 14 Polarization: 23.24 SS G_CDS: -5.02 Total: 18.22 kcal Total LS contribution 6.21 Total: 6.21 kcal Total: -37.05 -10.07 -47.12 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135184358.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.449 kcal (2) G-P(sol) polarization free energy of solvation -37.054 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.124 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.325 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds