Wall clock time and date at job start Wed Apr 1 2020 02:51:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 N 1.30233 * 124.92105 * 2 1 4 4 C 1.35548 * 109.70351 * 180.02562 * 3 2 1 5 5 C 1.40016 * 133.40436 * 179.97438 * 4 3 2 6 6 C 1.36184 * 120.08592 * 180.02562 * 5 4 3 7 7 C 1.40172 * 120.51235 * 0.02562 * 6 5 4 8 8 C 1.47608 * 119.93408 * 179.97438 * 7 6 5 9 9 O 1.21592 * 120.00102 * 180.02562 * 8 7 6 10 10 N 1.34784 * 120.00320 * 0.02562 * 8 7 6 11 11 C 1.46497 * 120.00075 * 180.02562 * 10 8 7 12 12 H 1.08996 * 109.47049 * 324.99133 * 11 10 8 13 13 C 1.52997 * 109.47188 * 85.00024 * 11 10 8 14 14 C 1.53006 * 109.46631 * 204.99770 * 11 10 8 15 15 C 1.53005 * 109.46991 * 65.00087 * 14 11 10 16 16 H 1.08996 * 109.46875 * 304.99826 * 15 14 11 17 17 C 1.53002 * 109.46855 * 184.99526 * 15 14 11 18 18 N 1.46500 * 109.47012 * 64.99831 * 15 14 11 19 19 C 1.36933 * 119.99729 * 204.99734 * 18 15 14 20 20 H 1.07998 * 120.00234 * 359.97438 * 19 18 15 21 21 C 1.38813 * 120.00098 * 180.02562 * 19 18 15 22 22 N 1.31629 * 119.99884 * 359.97438 * 21 19 18 23 23 Si 1.86801 * 120.00310 * 180.02562 * 21 19 18 24 24 H 1.48499 * 109.46906 * 359.97438 * 23 21 19 25 25 H 1.48503 * 109.47334 * 119.99998 * 23 21 19 26 26 H 1.48506 * 109.46776 * 239.99836 * 23 21 19 27 27 C 1.39373 * 120.13025 * 0.23161 * 7 6 5 28 28 C 1.38414 * 119.57213 * 359.51468 * 27 7 6 29 29 N 1.35853 * 124.93160 * 180.02562 * 2 1 3 30 30 C 1.46501 * 126.36300 * 359.97438 * 29 2 1 31 31 H 1.09004 * 109.47124 * 269.95504 * 1 2 3 32 32 H 1.09001 * 109.47706 * 29.95961 * 1 2 3 33 33 H 1.09002 * 109.47128 * 149.95730 * 1 2 3 34 34 H 1.08005 * 119.95944 * 0.02562 * 5 4 3 35 35 H 1.07994 * 119.74877 * 179.97438 * 6 5 4 36 36 H 0.96996 * 119.99132 * 359.97438 * 10 8 7 37 37 H 1.09002 * 109.47153 * 299.99573 * 13 11 10 38 38 H 1.09001 * 109.46832 * 179.97438 * 13 11 10 39 39 H 1.09004 * 109.47261 * 59.99745 * 13 11 10 40 40 H 1.08996 * 109.46945 * 184.99666 * 14 11 10 41 41 H 1.09000 * 109.47314 * 304.99788 * 14 11 10 42 42 H 1.08993 * 109.47136 * 300.00416 * 17 15 14 43 43 H 1.09002 * 109.46804 * 60.00365 * 17 15 14 44 44 H 1.08998 * 109.47168 * 179.97438 * 17 15 14 45 45 H 0.96997 * 120.00262 * 24.99729 * 18 15 14 46 46 H 0.96999 * 120.00024 * 179.97438 * 22 21 19 47 47 H 1.08007 * 120.21140 * 179.71929 * 27 7 6 48 48 H 1.08994 * 109.47073 * 269.97635 * 30 29 2 49 49 H 1.09004 * 109.47201 * 29.97260 * 30 29 2 50 50 H 1.08997 * 109.47161 * 149.96653 * 30 29 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2524 1.0678 0.0000 4 6 3.5604 0.7120 -0.0006 5 6 4.7558 1.4411 -0.0013 6 6 5.9522 0.7905 -0.0023 7 6 6.0005 -0.6104 -0.0031 8 6 7.3043 -1.3024 -0.0048 9 8 7.3477 -2.5175 -0.0060 10 7 8.4469 -0.5874 -0.0049 11 6 9.7408 -1.2742 -0.0071 12 1 9.6677 -2.1888 0.5813 13 6 10.1310 -1.6224 -1.4450 14 6 10.8048 -0.3593 0.6027 15 6 10.4803 -0.1119 2.0773 16 1 9.4673 0.2806 2.1655 17 6 11.4716 0.9004 2.6548 18 7 10.5821 -1.3719 2.8177 19 6 9.8774 -1.5422 3.9794 20 1 9.2470 -0.7475 4.3500 21 6 9.9741 -2.7359 4.6813 22 7 10.7429 -3.7043 4.2299 23 14 9.0123 -2.9684 6.2657 24 1 8.2290 -1.7402 6.5540 25 1 8.0888 -4.1222 6.1194 26 1 9.9550 -3.2276 7.3835 27 6 4.8200 -1.3511 -0.0079 28 6 3.6015 -0.6945 -0.0015 29 7 2.2848 -1.1138 -0.0005 30 6 1.8150 -2.5014 -0.0006 31 1 -0.3633 -0.0008 1.0277 32 1 -0.3634 0.8903 -0.5132 33 1 -0.3633 -0.8896 -0.5145 34 1 4.7290 2.5208 -0.0010 35 1 6.8709 1.3582 -0.0032 36 1 8.4122 0.3820 -0.0043 37 1 9.3730 -2.2742 -1.8794 38 1 11.0940 -2.1331 -1.4466 39 1 10.2041 -0.7077 -2.0333 40 1 11.7825 -0.8340 0.5206 41 1 10.8163 0.5910 0.0688 42 1 12.4846 0.5079 2.5665 43 1 11.3959 1.8379 2.1039 44 1 11.2402 1.0770 3.7052 45 1 11.1485 -2.0856 2.4851 46 1 10.8108 -4.5383 4.7206 47 1 4.8557 -2.4306 -0.0131 48 1 1.6992 -2.8459 1.0270 49 1 0.8550 -2.5600 -0.5137 50 1 2.5409 -3.1308 -0.5153 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001135184358.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:51:55 Heat of formation + Delta-G solvation = 16.880827 kcal Electronic energy + Delta-G solvation = -30174.342872 eV Core-core repulsion = 26201.258240 eV Total energy + Delta-G solvation = -3973.084632 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -43.28954 -41.03403 -38.60350 -37.89539 -36.07885 -35.29894 -34.04614 -32.84868 -31.82340 -31.48763 -30.40751 -28.76041 -27.92316 -27.56527 -25.67211 -24.63224 -23.30072 -22.38591 -21.72089 -21.17287 -21.06464 -19.36813 -18.90968 -18.26155 -17.46825 -17.10927 -17.00661 -16.68166 -16.06540 -15.75829 -15.64478 -15.35397 -15.18806 -14.91730 -14.58872 -14.45058 -14.32458 -14.23970 -14.03586 -13.88834 -13.58858 -13.46870 -13.33738 -13.16404 -13.10132 -12.94556 -12.79658 -12.66645 -12.60885 -12.32459 -12.20610 -12.15400 -11.80566 -11.54508 -11.46821 -11.39816 -11.12780 -10.98657 -10.90662 -10.02915 -9.43528 -9.18086 -8.93314 -7.91814 -5.16468 -0.46578 0.31391 1.40183 1.40854 1.42560 1.50990 1.51443 2.06363 2.25380 2.55769 2.84980 3.08490 3.42623 3.42907 3.70166 3.76264 3.85924 3.94878 4.04368 4.13995 4.17004 4.20337 4.26632 4.29974 4.43501 4.55969 4.57351 4.59982 4.67363 4.69961 4.71809 4.82003 4.85971 4.96041 4.99292 5.04959 5.07444 5.13260 5.20831 5.27097 5.29223 5.36088 5.38846 5.44934 5.52697 5.64189 5.66517 5.70387 6.09135 6.32017 6.62536 6.76034 7.30991 7.37556 8.18552 8.37841 9.32237 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.010042 B = 0.003102 C = 0.002708 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2787.747144 B = 9024.867413 C =10335.892689 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.291 3.709 3 N -0.533 5.533 4 C 0.054 3.946 5 C -0.077 4.077 6 C -0.085 4.085 7 C -0.133 4.133 8 C 0.556 3.444 9 O -0.587 6.587 10 N -0.695 5.695 11 C 0.146 3.854 12 H 0.047 0.953 13 C -0.151 4.151 14 C -0.118 4.118 15 C 0.162 3.838 16 H 0.043 0.957 17 C -0.156 4.156 18 N -0.731 5.731 19 C -0.221 4.221 20 H 0.069 0.931 21 C -0.079 4.079 22 N -0.969 5.969 23 Si 0.959 3.041 24 H -0.268 1.268 25 H -0.301 1.301 26 H -0.291 1.291 27 C -0.051 4.051 28 C 0.013 3.987 29 N -0.491 5.491 30 C 0.066 3.934 31 H 0.104 0.896 32 H 0.104 0.896 33 H 0.109 0.891 34 H 0.158 0.842 35 H 0.164 0.836 36 H 0.412 0.588 37 H 0.036 0.964 38 H 0.071 0.929 39 H 0.084 0.916 40 H 0.078 0.922 41 H 0.109 0.891 42 H 0.042 0.958 43 H 0.078 0.922 44 H 0.028 0.972 45 H 0.370 0.630 46 H 0.247 0.753 47 H 0.122 0.878 48 H 0.085 0.915 49 H 0.126 0.874 50 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.062 11.348 -15.248 26.220 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.026 3.974 3 N -0.254 5.254 4 C -0.067 4.067 5 C -0.096 4.096 6 C -0.106 4.106 7 C -0.138 4.138 8 C 0.345 3.655 9 O -0.468 6.468 10 N -0.347 5.347 11 C 0.042 3.958 12 H 0.065 0.935 13 C -0.209 4.209 14 C -0.156 4.156 15 C 0.054 3.946 16 H 0.061 0.939 17 C -0.216 4.216 18 N -0.371 5.371 19 C -0.354 4.354 20 H 0.087 0.913 21 C -0.271 4.271 22 N -0.620 5.620 23 Si 0.789 3.211 24 H -0.193 1.193 25 H -0.229 1.229 26 H -0.218 1.218 27 C -0.073 4.073 28 C -0.096 4.096 29 N -0.180 5.180 30 C -0.074 4.074 31 H 0.123 0.877 32 H 0.122 0.878 33 H 0.127 0.873 34 H 0.176 0.824 35 H 0.181 0.819 36 H 0.250 0.750 37 H 0.055 0.945 38 H 0.090 0.910 39 H 0.102 0.898 40 H 0.096 0.904 41 H 0.128 0.872 42 H 0.061 0.939 43 H 0.097 0.903 44 H 0.047 0.953 45 H 0.202 0.798 46 H 0.056 0.944 47 H 0.140 0.860 48 H 0.104 0.896 49 H 0.145 0.855 50 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -18.459 11.229 -15.113 26.367 hybrid contribution 0.323 -1.662 1.220 2.087 sum -18.136 9.568 -13.893 24.768 Atomic orbital electron populations 1.20665 0.80490 1.06436 1.05765 1.24668 0.97642 0.79986 0.95078 1.70414 1.00833 1.28718 1.25472 1.19627 0.93063 0.90594 1.03366 1.20173 0.88182 1.01030 1.00259 1.20945 0.99219 0.91638 0.98777 1.19593 0.91626 0.94731 1.07859 1.18409 0.84985 0.86542 0.75582 1.90761 1.88200 1.15758 1.52110 1.45723 1.04812 1.10521 1.73636 1.20879 0.82174 0.96046 0.96737 0.93450 1.22087 1.01284 1.02375 0.95186 1.22094 0.97875 1.00755 0.94903 1.20549 0.97007 0.86361 0.90690 0.93894 1.22302 0.99604 0.99446 1.00214 1.42605 1.54399 1.14535 1.25584 1.19531 1.18452 0.98121 0.99262 0.91350 1.25412 1.02292 0.96896 1.02530 1.69807 1.44728 1.05930 1.41584 0.85267 0.77981 0.77328 0.80487 1.19296 1.22918 1.21806 1.19956 0.88669 0.99777 0.98908 1.18783 0.86102 0.95437 1.09236 1.45431 1.03589 1.09328 1.59675 1.22375 1.03197 0.76945 1.04924 0.87727 0.87769 0.87263 0.82447 0.81891 0.75002 0.94491 0.91044 0.89758 0.90381 0.87228 0.93892 0.90329 0.95268 0.79822 0.94438 0.85979 0.89649 0.85536 0.89852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.59 10.17 71.23 0.72 0.13 16 2 C 0.29 5.70 7.85 137.94 1.08 6.78 16 3 N -0.53 -13.94 11.27 -179.81 -2.03 -15.97 16 4 C 0.05 1.49 7.23 39.61 0.29 1.78 16 5 C -0.08 -1.82 10.03 22.22 0.22 -1.60 16 6 C -0.08 -1.98 9.46 22.26 0.21 -1.77 16 7 C -0.13 -4.07 5.88 -20.06 -0.12 -4.19 16 8 C 0.56 20.09 7.73 86.72 0.67 20.76 16 9 O -0.59 -27.03 15.99 -4.00 -0.06 -27.09 16 10 N -0.70 -20.59 4.40 -445.62 -1.96 -22.55 16 11 C 0.15 4.76 2.52 44.99 0.11 4.87 16 12 H 0.05 2.15 7.05 -2.39 -0.02 2.13 16 13 C -0.15 -4.04 9.48 71.98 0.68 -3.36 16 14 C -0.12 -3.33 4.29 30.60 0.13 -3.20 16 15 C 0.16 5.95 2.84 44.99 0.13 6.08 16 16 H 0.04 1.61 7.56 -2.39 -0.02 1.60 16 17 C -0.16 -5.09 9.49 71.98 0.68 -4.41 16 18 N -0.73 -36.75 4.49 -322.94 -1.45 -38.20 16 19 C -0.22 -12.64 9.93 84.03 0.83 -11.81 16 20 H 0.07 3.82 7.83 -2.91 -0.02 3.80 16 21 C -0.08 -4.78 5.50 84.86 0.47 -4.31 16 22 N -0.97 -61.94 13.06 21.65 0.28 -61.66 16 23 Si 0.96 48.91 29.55 68.60 2.03 50.94 16 24 H -0.27 -12.92 7.11 99.48 0.71 -12.21 16 25 H -0.30 -15.65 7.11 99.48 0.71 -14.94 16 26 H -0.29 -14.61 7.11 99.48 0.71 -13.91 16 27 C -0.05 -1.59 9.58 22.59 0.22 -1.37 16 28 C 0.01 0.36 6.86 38.79 0.27 0.63 16 29 N -0.49 -10.22 3.20 -528.98 -1.70 -11.92 16 30 C 0.07 0.78 10.96 127.77 1.40 2.18 16 31 H 0.10 0.58 8.14 -2.39 -0.02 0.56 16 32 H 0.10 0.72 8.14 -2.39 -0.02 0.70 16 33 H 0.11 0.22 7.01 -2.39 -0.02 0.20 16 34 H 0.16 2.87 8.06 -2.91 -0.02 2.84 16 35 H 0.16 2.61 6.36 -2.91 -0.02 2.60 16 36 H 0.41 8.88 6.60 -92.71 -0.61 8.27 16 37 H 0.04 1.13 8.14 -2.39 -0.02 1.11 16 38 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 39 H 0.08 1.69 8.14 -2.38 -0.02 1.67 16 40 H 0.08 2.24 8.14 -2.39 -0.02 2.22 16 41 H 0.11 2.12 8.14 -2.39 -0.02 2.10 16 42 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 43 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 44 H 0.03 1.07 8.14 -2.39 -0.02 1.05 16 45 H 0.37 20.30 7.80 -92.71 -0.72 19.58 16 46 H 0.25 15.40 8.31 -92.71 -0.77 14.63 16 47 H 0.12 3.94 7.64 -2.91 -0.02 3.92 16 48 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 49 H 0.13 0.50 6.99 -2.39 -0.02 0.49 16 50 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 Total: -1.00 -86.59 411.99 2.74 -83.85 By element: Atomic # 1 Polarization: 35.78 SS G_CDS: -0.37 Total: 35.41 kcal Atomic # 6 Polarization: -0.81 SS G_CDS: 8.00 Total: 7.20 kcal Atomic # 7 Polarization: -143.45 SS G_CDS: -6.85 Total: -150.30 kcal Atomic # 8 Polarization: -27.03 SS G_CDS: -0.06 Total: -27.09 kcal Atomic # 14 Polarization: 48.91 SS G_CDS: 2.03 Total: 50.94 kcal Total: -86.59 2.74 -83.85 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135184358.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.729 kcal (2) G-P(sol) polarization free energy of solvation -86.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.137 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.744 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.848 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.881 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds