Wall clock time and date at job start Wed Apr 1 2020 03:35:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50703 * 109.46746 * 2 1 4 4 N 1.31921 * 120.16843 * 264.12026 * 3 2 1 5 5 N 1.28281 * 122.32590 * 179.97438 * 4 3 2 6 6 C 1.31922 * 122.51227 * 0.02562 * 5 4 3 7 7 C 1.50701 * 120.01072 * 179.97438 * 6 5 4 8 8 C 1.38497 * 119.97297 * 359.71135 * 6 5 4 9 9 C 1.39724 * 120.17527 * 84.10316 * 3 2 1 10 10 C 1.48137 * 121.14524 * 0.02562 * 9 3 2 11 11 O 1.21523 * 119.99584 * 353.83363 * 10 9 3 12 12 N 1.34770 * 120.00318 * 173.83894 * 10 9 3 13 13 C 1.46499 * 120.00459 * 180.02562 * 12 10 9 14 14 C 1.53000 * 109.47498 * 179.97438 * 13 12 10 15 15 C 1.50699 * 109.46963 * 179.97438 * 14 13 12 16 16 C 1.29455 * 117.69274 * 95.00126 * 15 14 13 17 17 C 1.50321 * 123.65047 * 180.85499 * 16 15 14 18 18 N 1.47004 * 109.16675 * 349.02070 * 17 16 15 19 19 C 1.36930 * 121.37934 * 222.96738 * 18 17 16 20 20 H 1.08000 * 120.00222 * 157.35090 * 19 18 17 21 21 C 1.38816 * 119.99811 * 337.35434 * 19 18 17 22 22 N 1.31616 * 119.99774 * 343.67757 * 21 19 18 23 23 Si 1.86803 * 119.99858 * 163.68158 * 21 19 18 24 24 H 1.48492 * 109.47202 * 359.97438 * 23 21 19 25 25 H 1.48493 * 109.47033 * 120.00170 * 23 21 19 26 26 H 1.48506 * 109.46756 * 239.99647 * 23 21 19 27 27 C 1.47342 * 117.24942 * 42.95114 * 18 17 16 28 28 C 1.49970 * 117.69430 * 274.73919 * 15 14 13 29 29 H 1.09003 * 109.46902 * 300.00072 * 1 2 3 30 30 H 1.08999 * 109.47408 * 59.99924 * 1 2 3 31 31 H 1.08996 * 109.47024 * 180.02562 * 1 2 3 32 32 H 1.08994 * 109.47097 * 239.99880 * 2 1 3 33 33 H 1.08996 * 109.47148 * 119.99350 * 2 1 3 34 34 H 1.08996 * 109.47205 * 89.99656 * 7 6 5 35 35 H 1.08998 * 109.46743 * 209.99657 * 7 6 5 36 36 H 1.09000 * 109.47420 * 329.99495 * 7 6 5 37 37 H 1.07993 * 121.09263 * 180.31420 * 8 6 5 38 38 H 0.96999 * 119.99646 * 359.97438 * 12 10 9 39 39 H 1.08994 * 109.47137 * 59.99160 * 13 12 10 40 40 H 1.09004 * 109.46404 * 299.99527 * 13 12 10 41 41 H 1.09000 * 109.46674 * 59.99908 * 14 13 12 42 42 H 1.08998 * 109.46680 * 299.99918 * 14 13 12 43 43 H 1.08004 * 118.17489 * 0.87878 * 16 15 14 44 44 H 1.09004 * 109.52312 * 108.92907 * 17 16 15 45 45 H 1.08998 * 109.52219 * 229.11327 * 17 16 15 46 46 H 0.97005 * 119.99732 * 179.97438 * 22 21 19 47 47 H 1.09002 * 109.78063 * 57.80313 * 27 18 17 48 48 H 1.09001 * 109.78135 * 178.61951 * 27 18 17 49 49 H 1.09005 * 109.30977 * 281.29138 * 28 15 14 50 50 H 1.08996 * 109.31405 * 40.71860 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 7 2.3634 2.0070 -1.1345 5 7 2.7948 3.2141 -1.1826 6 6 2.9401 3.9587 -0.1033 7 6 3.4525 5.3707 -0.2251 8 6 2.6163 3.4441 1.1410 9 6 2.1493 2.1244 1.2015 10 6 1.7870 1.4984 2.4943 11 8 1.2753 0.3963 2.5135 12 7 2.0248 2.1511 3.6492 13 6 1.6670 1.5319 4.9278 14 6 2.0403 2.4748 6.0734 15 6 1.6717 1.8380 7.3885 16 6 2.5937 1.1843 8.0198 17 6 2.3686 0.4825 9.3299 18 7 1.0618 0.8808 9.8726 19 6 0.9012 1.1776 11.1996 20 1 0.0779 1.7997 11.5181 21 6 1.7969 0.6789 12.1356 22 7 2.5941 -0.3187 11.8171 23 14 1.8705 1.4237 13.8472 24 1 0.8792 2.5244 13.9511 25 1 1.5584 0.3790 14.8554 26 1 3.2329 1.9599 14.0955 27 6 -0.0683 0.9479 8.9294 28 6 0.2643 2.0112 7.8766 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0276 0.0005 32 1 1.8933 -0.5138 -0.8899 33 1 1.8933 -0.5137 0.8900 34 1 2.6122 6.0518 -0.3598 35 1 3.9962 5.6392 0.6806 36 1 4.1196 5.4423 -1.0841 37 1 2.7234 4.0392 2.0358 38 1 2.4335 3.0307 3.6339 39 1 2.2077 0.5922 5.0402 40 1 0.5945 1.3389 4.9504 41 1 1.4998 3.4147 5.9610 42 1 3.1129 2.6674 6.0505 43 1 3.5796 1.1410 7.5809 44 1 2.3844 -0.5961 9.1728 45 1 3.1546 0.7607 10.0319 46 1 3.2203 -0.6670 12.4711 47 1 -0.2063 -0.0211 8.4496 48 1 -0.9768 1.2295 9.4617 49 1 0.1540 3.0036 8.3139 50 1 -0.4233 1.9120 7.0367 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001160529428.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:35:19 Heat of formation + Delta-G solvation = 49.724827 kcal Electronic energy + Delta-G solvation = -29246.911517 eV Core-core repulsion = 25275.251108 eV Total energy + Delta-G solvation = -3971.660409 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -41.83322 -39.81975 -38.00124 -36.06612 -35.11758 -34.25062 -33.61464 -32.08390 -31.28820 -29.89426 -28.86650 -28.35153 -26.01136 -25.38162 -24.46923 -23.12808 -22.62059 -22.10518 -21.24224 -20.81452 -18.19917 -18.05827 -17.64667 -16.44298 -16.29751 -16.01526 -15.65422 -15.44927 -15.06855 -14.95692 -14.43328 -14.31180 -14.09292 -14.04066 -13.68060 -13.62490 -13.51791 -13.36082 -12.88872 -12.71080 -12.63759 -12.31741 -12.09860 -12.07204 -11.69422 -11.49961 -11.30200 -11.19135 -11.08647 -10.94907 -10.77185 -10.69691 -10.68372 -10.32079 -10.29716 -9.95475 -9.84844 -9.81665 -9.58949 -9.35865 -8.69629 -7.98401 -6.77902 -5.81654 -3.19157 -0.13437 0.38004 2.36591 2.54734 2.93043 3.12904 3.35280 3.43030 3.45093 3.45111 3.76671 3.87666 4.10591 4.25345 4.47177 4.57078 4.74939 4.91357 4.98397 5.00968 5.01957 5.13239 5.15323 5.17524 5.22026 5.36088 5.46662 5.48931 5.50926 5.55191 5.68306 5.71326 5.77478 5.87299 5.89812 6.02204 6.03426 6.09320 6.14514 6.18360 6.33323 6.50288 6.73803 6.85942 7.02123 7.18539 7.28303 7.35588 7.71853 7.73299 7.83729 8.23852 8.35400 9.17572 9.80681 10.38362 11.28714 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.021478 B = 0.001868 C = 0.001783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1303.318130 B =14987.327507 C =15697.232119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.077 4.077 3 C 0.121 3.879 4 N -0.239 5.239 5 N -0.225 5.225 6 C 0.057 3.943 7 C -0.101 4.101 8 C -0.084 4.084 9 C -0.126 4.126 10 C 0.557 3.443 11 O -0.509 6.509 12 N -0.719 5.719 13 C 0.124 3.876 14 C -0.092 4.092 15 C -0.144 4.144 16 C -0.144 4.144 17 C 0.195 3.805 18 N -0.596 5.596 19 C -0.244 4.244 20 H 0.070 0.930 21 C -0.004 4.004 22 N -0.909 5.909 23 Si 0.904 3.096 24 H -0.278 1.278 25 H -0.291 1.291 26 H -0.289 1.289 27 C 0.143 3.857 28 C -0.091 4.091 29 H 0.061 0.939 30 H 0.049 0.951 31 H 0.066 0.934 32 H 0.081 0.919 33 H 0.110 0.890 34 H 0.086 0.914 35 H 0.081 0.919 36 H 0.085 0.915 37 H 0.154 0.846 38 H 0.398 0.602 39 H 0.074 0.926 40 H 0.075 0.925 41 H 0.067 0.933 42 H 0.067 0.933 43 H 0.091 0.909 44 H 0.038 0.962 45 H 0.093 0.907 46 H 0.253 0.747 47 H 0.024 0.976 48 H 0.056 0.944 49 H 0.063 0.937 50 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.984 9.390 -23.518 25.343 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.116 4.116 3 C -0.023 4.023 4 N -0.080 5.080 5 N -0.068 5.068 6 C -0.087 4.087 7 C -0.159 4.159 8 C -0.113 4.113 9 C -0.140 4.140 10 C 0.342 3.658 11 O -0.385 6.385 12 N -0.370 5.370 13 C 0.001 3.999 14 C -0.130 4.130 15 C -0.145 4.145 16 C -0.163 4.163 17 C 0.070 3.930 18 N -0.319 5.319 19 C -0.373 4.373 20 H 0.087 0.913 21 C -0.201 4.201 22 N -0.555 5.555 23 Si 0.734 3.266 24 H -0.203 1.203 25 H -0.218 1.218 26 H -0.216 1.216 27 C 0.016 3.984 28 C -0.130 4.130 29 H 0.080 0.920 30 H 0.068 0.932 31 H 0.085 0.915 32 H 0.099 0.901 33 H 0.128 0.872 34 H 0.104 0.896 35 H 0.100 0.900 36 H 0.104 0.896 37 H 0.172 0.828 38 H 0.233 0.767 39 H 0.093 0.907 40 H 0.093 0.907 41 H 0.086 0.914 42 H 0.085 0.915 43 H 0.109 0.891 44 H 0.056 0.944 45 H 0.111 0.889 46 H 0.063 0.937 47 H 0.042 0.958 48 H 0.075 0.925 49 H 0.081 0.919 50 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 0.853 8.384 -24.992 26.374 hybrid contribution 0.352 1.044 2.443 2.680 sum 1.205 9.428 -22.549 24.470 Atomic orbital electron populations 1.21593 0.93244 1.02672 1.01698 1.20728 0.97397 0.88528 1.04914 1.23183 0.91946 0.98748 0.88472 1.73089 1.07971 1.03048 1.23869 1.72853 1.07386 0.99566 1.27008 1.22880 0.96782 0.99021 0.90002 1.20711 1.02054 0.88815 1.04347 1.22541 0.94574 0.94421 0.99804 1.21158 1.01687 0.95245 0.95935 1.17860 0.79456 0.85449 0.83048 1.90789 1.42051 1.18926 1.86740 1.46022 1.63144 1.21622 1.06251 1.21561 1.01516 0.96829 0.79955 1.20918 1.01189 0.97982 0.92895 1.20196 0.96789 1.02523 0.95002 1.23143 0.97087 0.97059 0.99042 1.19736 0.89264 0.94986 0.89031 1.44161 1.03060 1.80146 1.04567 1.19235 1.12114 1.23922 0.82046 0.91273 1.24965 1.00572 0.96747 0.97843 1.70032 1.26102 1.24789 1.34562 0.86187 0.77474 0.78606 0.84329 1.20339 1.21763 1.21621 1.20990 0.91561 0.94981 0.90856 1.20792 0.92788 1.00933 0.98473 0.91992 0.93205 0.91473 0.90092 0.87197 0.89584 0.89976 0.89630 0.82843 0.76721 0.90745 0.90719 0.91387 0.91461 0.89063 0.94399 0.88910 0.93673 0.95771 0.92540 0.91901 0.92938 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.30 9.51 37.16 0.35 -0.95 16 2 C -0.08 -0.78 5.48 -27.88 -0.15 -0.93 16 3 C 0.12 1.32 6.16 -82.00 -0.51 0.82 16 4 N -0.24 -2.86 11.42 33.81 0.39 -2.48 16 5 N -0.22 -2.48 11.41 33.57 0.38 -2.10 16 6 C 0.06 0.45 6.86 -82.46 -0.57 -0.11 16 7 C -0.10 -0.43 10.19 36.01 0.37 -0.06 16 8 C -0.08 -0.59 9.34 -38.78 -0.36 -0.95 16 9 C -0.13 -1.21 5.92 -104.57 -0.62 -1.83 16 10 C 0.56 5.92 7.73 -12.20 -0.09 5.83 16 11 O -0.51 -6.80 12.03 5.35 0.06 -6.73 16 12 N -0.72 -6.35 5.51 -61.16 -0.34 -6.68 16 13 C 0.12 1.37 5.66 -4.04 -0.02 1.35 16 14 C -0.09 -1.04 5.32 -27.88 -0.15 -1.19 16 15 C -0.14 -2.31 5.11 -100.99 -0.52 -2.83 16 16 C -0.14 -2.64 9.47 -35.78 -0.34 -2.98 16 17 C 0.19 4.57 5.25 -5.10 -0.03 4.54 16 18 N -0.60 -14.76 3.01 -173.56 -0.52 -15.28 16 19 C -0.24 -6.61 9.72 -15.06 -0.15 -6.76 16 20 H 0.07 1.84 7.88 -52.49 -0.41 1.42 16 21 C 0.00 -0.10 5.00 -17.43 -0.09 -0.19 16 22 N -0.91 -26.03 11.03 55.49 0.61 -25.42 16 23 Si 0.90 21.48 29.58 -169.99 -5.03 16.45 16 24 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 25 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 26 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 27 C 0.14 2.92 6.59 -3.43 -0.02 2.90 16 28 C -0.09 -1.51 5.95 -28.08 -0.17 -1.68 16 29 H 0.06 0.68 6.90 -51.93 -0.36 0.32 16 30 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 33 H 0.11 1.22 5.90 -51.93 -0.31 0.91 16 34 H 0.09 0.28 8.14 -51.93 -0.42 -0.14 16 35 H 0.08 0.18 8.09 -51.93 -0.42 -0.24 16 36 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 37 H 0.15 0.51 6.66 -52.49 -0.35 0.16 16 38 H 0.40 2.32 6.70 -40.82 -0.27 2.04 16 39 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 40 H 0.07 0.91 8.11 -51.93 -0.42 0.49 16 41 H 0.07 0.68 8.11 -51.93 -0.42 0.26 16 42 H 0.07 0.70 7.78 -51.93 -0.40 0.30 16 43 H 0.09 1.47 7.73 -52.48 -0.41 1.07 16 44 H 0.04 0.96 8.14 -51.93 -0.42 0.54 16 45 H 0.09 2.43 6.33 -51.93 -0.33 2.10 16 46 H 0.25 7.00 8.31 -40.82 -0.34 6.66 16 47 H 0.02 0.50 8.14 -51.93 -0.42 0.07 16 48 H 0.06 1.12 7.96 -51.93 -0.41 0.71 16 49 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 50 H 0.05 0.75 8.10 -51.93 -0.42 0.33 16 LS Contribution 402.43 15.07 6.06 6.06 Total: -1.00 -32.40 402.43 -9.31 -41.71 By element: Atomic # 1 Polarization: 7.37 SS G_CDS: -7.88 Total: -0.51 kcal Atomic # 6 Polarization: -1.97 SS G_CDS: -3.05 Total: -5.03 kcal Atomic # 7 Polarization: -52.48 SS G_CDS: 0.52 Total: -51.96 kcal Atomic # 8 Polarization: -6.80 SS G_CDS: 0.06 Total: -6.73 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.03 Total: 16.45 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -32.40 -9.31 -41.71 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001160529428.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.432 kcal (2) G-P(sol) polarization free energy of solvation -32.397 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.035 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.311 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.707 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.725 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds