Wall clock time and date at job start Wed Apr 1 2020 03:35:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50703 * 109.46746 * 2 1 4 4 N 1.31921 * 120.16843 * 264.12026 * 3 2 1 5 5 N 1.28281 * 122.32590 * 179.97438 * 4 3 2 6 6 C 1.31922 * 122.51227 * 0.02562 * 5 4 3 7 7 C 1.50701 * 120.01072 * 179.97438 * 6 5 4 8 8 C 1.38497 * 119.97297 * 359.71135 * 6 5 4 9 9 C 1.39724 * 120.17527 * 84.10316 * 3 2 1 10 10 C 1.48137 * 121.14524 * 0.02562 * 9 3 2 11 11 O 1.21523 * 119.99584 * 353.83363 * 10 9 3 12 12 N 1.34770 * 120.00318 * 173.83894 * 10 9 3 13 13 C 1.46499 * 120.00459 * 180.02562 * 12 10 9 14 14 C 1.53000 * 109.47498 * 179.97438 * 13 12 10 15 15 C 1.50699 * 109.46963 * 179.97438 * 14 13 12 16 16 C 1.29455 * 117.69274 * 95.00126 * 15 14 13 17 17 C 1.50321 * 123.65047 * 180.85499 * 16 15 14 18 18 N 1.47004 * 109.16675 * 349.02070 * 17 16 15 19 19 C 1.36930 * 121.37934 * 222.96738 * 18 17 16 20 20 H 1.08000 * 120.00222 * 157.35090 * 19 18 17 21 21 C 1.38816 * 119.99811 * 337.35434 * 19 18 17 22 22 N 1.31616 * 119.99774 * 343.67757 * 21 19 18 23 23 Si 1.86803 * 119.99858 * 163.68158 * 21 19 18 24 24 H 1.48492 * 109.47202 * 359.97438 * 23 21 19 25 25 H 1.48493 * 109.47033 * 120.00170 * 23 21 19 26 26 H 1.48506 * 109.46756 * 239.99647 * 23 21 19 27 27 C 1.47342 * 117.24942 * 42.95114 * 18 17 16 28 28 C 1.49970 * 117.69430 * 274.73919 * 15 14 13 29 29 H 1.09003 * 109.46902 * 300.00072 * 1 2 3 30 30 H 1.08999 * 109.47408 * 59.99924 * 1 2 3 31 31 H 1.08996 * 109.47024 * 180.02562 * 1 2 3 32 32 H 1.08994 * 109.47097 * 239.99880 * 2 1 3 33 33 H 1.08996 * 109.47148 * 119.99350 * 2 1 3 34 34 H 1.08996 * 109.47205 * 89.99656 * 7 6 5 35 35 H 1.08998 * 109.46743 * 209.99657 * 7 6 5 36 36 H 1.09000 * 109.47420 * 329.99495 * 7 6 5 37 37 H 1.07993 * 121.09263 * 180.31420 * 8 6 5 38 38 H 0.96999 * 119.99646 * 359.97438 * 12 10 9 39 39 H 1.08994 * 109.47137 * 59.99160 * 13 12 10 40 40 H 1.09004 * 109.46404 * 299.99527 * 13 12 10 41 41 H 1.09000 * 109.46674 * 59.99908 * 14 13 12 42 42 H 1.08998 * 109.46680 * 299.99918 * 14 13 12 43 43 H 1.08004 * 118.17489 * 0.87878 * 16 15 14 44 44 H 1.09004 * 109.52312 * 108.92907 * 17 16 15 45 45 H 1.08998 * 109.52219 * 229.11327 * 17 16 15 46 46 H 0.97005 * 119.99732 * 179.97438 * 22 21 19 47 47 H 1.09002 * 109.78063 * 57.80313 * 27 18 17 48 48 H 1.09001 * 109.78135 * 178.61951 * 27 18 17 49 49 H 1.09005 * 109.30977 * 281.29138 * 28 15 14 50 50 H 1.08996 * 109.31405 * 40.71860 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 7 2.3634 2.0070 -1.1345 5 7 2.7948 3.2141 -1.1826 6 6 2.9401 3.9587 -0.1033 7 6 3.4525 5.3707 -0.2251 8 6 2.6163 3.4441 1.1410 9 6 2.1493 2.1244 1.2015 10 6 1.7870 1.4984 2.4943 11 8 1.2753 0.3963 2.5135 12 7 2.0248 2.1511 3.6492 13 6 1.6670 1.5319 4.9278 14 6 2.0403 2.4748 6.0734 15 6 1.6717 1.8380 7.3885 16 6 2.5937 1.1843 8.0198 17 6 2.3686 0.4825 9.3299 18 7 1.0618 0.8808 9.8726 19 6 0.9012 1.1776 11.1996 20 1 0.0779 1.7997 11.5181 21 6 1.7969 0.6789 12.1356 22 7 2.5941 -0.3187 11.8171 23 14 1.8705 1.4237 13.8472 24 1 0.8792 2.5244 13.9511 25 1 1.5584 0.3790 14.8554 26 1 3.2329 1.9599 14.0955 27 6 -0.0683 0.9479 8.9294 28 6 0.2643 2.0112 7.8766 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0276 0.0005 32 1 1.8933 -0.5138 -0.8899 33 1 1.8933 -0.5137 0.8900 34 1 2.6122 6.0518 -0.3598 35 1 3.9962 5.6392 0.6806 36 1 4.1196 5.4423 -1.0841 37 1 2.7234 4.0392 2.0358 38 1 2.4335 3.0307 3.6339 39 1 2.2077 0.5922 5.0402 40 1 0.5945 1.3389 4.9504 41 1 1.4998 3.4147 5.9610 42 1 3.1129 2.6674 6.0505 43 1 3.5796 1.1410 7.5809 44 1 2.3844 -0.5961 9.1728 45 1 3.1546 0.7607 10.0319 46 1 3.2203 -0.6670 12.4711 47 1 -0.2063 -0.0211 8.4496 48 1 -0.9768 1.2295 9.4617 49 1 0.1540 3.0036 8.3139 50 1 -0.4233 1.9120 7.0367 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001160529428.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:35:18 Heat of formation + Delta-G solvation = 29.429167 kcal Electronic energy + Delta-G solvation = -29247.791603 eV Core-core repulsion = 25275.251108 eV Total energy + Delta-G solvation = -3972.540495 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.53422 -40.64046 -39.45432 -37.05037 -36.02343 -35.25136 -34.70635 -33.27256 -32.51544 -31.45429 -30.17324 -28.96570 -27.30144 -26.35144 -25.40276 -24.55450 -23.91712 -22.94864 -22.44135 -21.85578 -19.46093 -18.90555 -18.78060 -17.60414 -17.15832 -17.04063 -16.73884 -16.68378 -16.20320 -15.85029 -15.62615 -15.44404 -15.16531 -15.12812 -14.95195 -14.79625 -14.31069 -14.23016 -14.05110 -13.85191 -13.38356 -13.27373 -13.21204 -13.19102 -12.83667 -12.81106 -12.79429 -12.59540 -12.36556 -12.14477 -12.12332 -11.88929 -11.84393 -11.65153 -11.46574 -11.36836 -11.18650 -10.68980 -10.63135 -10.55131 -10.16912 -9.46957 -8.76514 -7.88045 -5.28606 -0.81268 -0.25731 1.40844 1.46251 1.47487 1.58262 1.60035 1.91378 2.42731 2.51059 2.81587 3.14435 3.24957 3.28552 3.52039 3.65812 3.68473 3.97314 3.98842 4.09735 4.12685 4.21283 4.23558 4.31456 4.38339 4.52714 4.57445 4.60619 4.67410 4.70714 4.78170 4.87790 4.89760 4.92056 4.96803 4.99047 5.01997 5.06237 5.19152 5.22475 5.25724 5.26041 5.30604 5.38562 5.43995 5.52328 5.61441 5.89697 6.29457 6.33523 6.35393 7.00695 7.13418 7.54660 7.84156 8.37805 9.20531 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.021478 B = 0.001868 C = 0.001783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1303.318130 B =14987.327507 C =15697.232119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.075 4.075 3 C 0.107 3.893 4 N -0.269 5.269 5 N -0.257 5.257 6 C 0.059 3.941 7 C -0.100 4.100 8 C -0.064 4.064 9 C -0.138 4.138 10 C 0.559 3.441 11 O -0.542 6.542 12 N -0.702 5.702 13 C 0.133 3.867 14 C -0.080 4.080 15 C -0.119 4.119 16 C -0.174 4.174 17 C 0.204 3.796 18 N -0.616 5.616 19 C -0.254 4.254 20 H 0.072 0.928 21 C -0.059 4.059 22 N -0.942 5.942 23 Si 0.970 3.030 24 H -0.265 1.265 25 H -0.294 1.294 26 H -0.290 1.290 27 C 0.134 3.866 28 C -0.087 4.087 29 H 0.048 0.952 30 H 0.050 0.950 31 H 0.074 0.926 32 H 0.084 0.916 33 H 0.098 0.902 34 H 0.100 0.900 35 H 0.111 0.889 36 H 0.081 0.919 37 H 0.199 0.801 38 H 0.417 0.583 39 H 0.056 0.944 40 H 0.067 0.933 41 H 0.097 0.903 42 H 0.086 0.914 43 H 0.114 0.886 44 H 0.001 0.999 45 H 0.056 0.944 46 H 0.249 0.751 47 H 0.018 0.982 48 H 0.057 0.943 49 H 0.069 0.931 50 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.877 12.874 -24.357 27.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.114 4.114 3 C -0.039 4.039 4 N -0.109 5.109 5 N -0.099 5.099 6 C -0.087 4.087 7 C -0.158 4.158 8 C -0.093 4.093 9 C -0.152 4.152 10 C 0.344 3.656 11 O -0.420 6.420 12 N -0.354 5.354 13 C 0.009 3.991 14 C -0.117 4.117 15 C -0.120 4.120 16 C -0.193 4.193 17 C 0.079 3.921 18 N -0.340 5.340 19 C -0.384 4.384 20 H 0.090 0.910 21 C -0.254 4.254 22 N -0.589 5.589 23 Si 0.798 3.202 24 H -0.189 1.189 25 H -0.221 1.221 26 H -0.217 1.217 27 C 0.009 3.991 28 C -0.125 4.125 29 H 0.067 0.933 30 H 0.069 0.931 31 H 0.093 0.907 32 H 0.102 0.898 33 H 0.117 0.883 34 H 0.118 0.882 35 H 0.130 0.870 36 H 0.100 0.900 37 H 0.216 0.784 38 H 0.255 0.745 39 H 0.074 0.926 40 H 0.085 0.915 41 H 0.115 0.885 42 H 0.104 0.896 43 H 0.132 0.868 44 H 0.018 0.982 45 H 0.074 0.926 46 H 0.058 0.942 47 H 0.036 0.964 48 H 0.076 0.924 49 H 0.087 0.913 50 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 0.738 11.911 -25.873 28.492 hybrid contribution 0.309 0.001 2.664 2.682 sum 1.047 11.912 -23.209 26.109 Atomic orbital electron populations 1.21526 0.93081 1.02947 1.00986 1.20665 0.97537 0.88711 1.04442 1.23247 0.92548 0.99013 0.89069 1.73023 1.09298 1.03962 1.24616 1.72765 1.08556 0.99669 1.28944 1.23511 0.95467 1.00137 0.89554 1.20887 1.02669 0.86495 1.05765 1.23007 0.91901 0.93304 1.01112 1.21093 1.02841 0.96452 0.94807 1.17991 0.78907 0.85052 0.83644 1.90784 1.43587 1.20468 1.87194 1.45738 1.62652 1.22172 1.04884 1.21281 1.00781 0.96215 0.80777 1.20821 1.02882 0.98413 0.89612 1.20558 0.95593 0.99651 0.96187 1.22819 0.99361 0.99703 0.97466 1.19378 0.87996 0.93645 0.91050 1.44464 1.04667 1.80222 1.04669 1.19581 1.11938 1.23405 0.83467 0.91018 1.25762 1.00713 0.97331 1.01566 1.70210 1.26919 1.26239 1.35530 0.85161 0.77440 0.77852 0.79751 1.18942 1.22144 1.21685 1.21205 0.90506 0.96173 0.91258 1.20749 0.94048 0.99430 0.98315 0.93318 0.93072 0.90742 0.89753 0.88342 0.88193 0.87024 0.89973 0.78430 0.74519 0.92602 0.91508 0.88485 0.89572 0.86810 0.98167 0.92593 0.94202 0.96392 0.92396 0.91261 0.89418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.51 9.51 71.98 0.68 -1.82 16 2 C -0.07 -1.55 5.48 29.85 0.16 -1.39 16 3 C 0.11 2.30 6.16 42.91 0.26 2.56 16 4 N -0.27 -6.42 11.42 -46.95 -0.54 -6.96 16 5 N -0.26 -5.42 11.41 -47.70 -0.54 -5.97 16 6 C 0.06 0.76 6.86 42.61 0.29 1.05 16 7 C -0.10 -0.46 10.19 71.24 0.73 0.27 16 8 C -0.06 -0.66 9.34 22.79 0.21 -0.44 16 9 C -0.14 -2.38 5.92 -19.83 -0.12 -2.49 16 10 C 0.56 10.72 7.73 86.87 0.67 11.39 16 11 O -0.54 -14.14 12.03 -3.79 -0.05 -14.18 16 12 N -0.70 -9.70 5.51 -465.70 -2.57 -12.27 16 13 C 0.13 2.49 5.66 86.38 0.49 2.98 16 14 C -0.08 -1.43 5.32 29.85 0.16 -1.27 16 15 C -0.12 -3.48 5.11 -15.14 -0.08 -3.56 16 16 C -0.17 -6.28 9.47 27.10 0.26 -6.03 16 17 C 0.20 9.99 5.25 85.42 0.45 10.44 16 18 N -0.62 -31.08 3.01 -703.02 -2.12 -33.19 16 19 C -0.25 -13.97 9.72 84.04 0.82 -13.16 16 20 H 0.07 3.81 7.88 -2.91 -0.02 3.79 16 21 C -0.06 -3.33 5.00 84.86 0.42 -2.91 16 22 N -0.94 -56.13 11.03 21.65 0.24 -55.89 16 23 Si 0.97 44.84 29.58 68.60 2.03 46.87 16 24 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 25 H -0.29 -13.68 7.11 99.48 0.71 -12.97 16 26 H -0.29 -13.33 7.11 99.48 0.71 -12.62 16 27 C 0.13 5.41 6.59 86.32 0.57 5.98 16 28 C -0.09 -2.64 5.95 29.72 0.18 -2.47 16 29 H 0.05 1.08 6.90 -2.39 -0.02 1.06 16 30 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 31 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 32 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 33 H 0.10 2.26 5.90 -2.39 -0.01 2.25 16 34 H 0.10 0.25 8.14 -2.39 -0.02 0.23 16 35 H 0.11 -0.11 8.09 -2.39 -0.02 -0.13 16 36 H 0.08 0.48 8.14 -2.39 -0.02 0.46 16 37 H 0.20 0.10 6.66 -2.91 -0.02 0.08 16 38 H 0.42 2.54 6.70 -92.71 -0.62 1.92 16 39 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 40 H 0.07 1.40 8.11 -2.39 -0.02 1.38 16 41 H 0.10 1.30 8.11 -2.39 -0.02 1.28 16 42 H 0.09 1.33 7.78 -2.39 -0.02 1.31 16 43 H 0.11 3.53 7.73 -2.91 -0.02 3.50 16 44 H 0.00 0.03 8.14 -2.38 -0.02 0.01 16 45 H 0.06 3.09 6.33 -2.39 -0.02 3.07 16 46 H 0.25 14.33 8.31 -92.70 -0.77 13.56 16 47 H 0.02 0.74 8.14 -2.39 -0.02 0.72 16 48 H 0.06 2.27 7.96 -2.39 -0.02 2.25 16 49 H 0.07 2.10 8.14 -2.38 -0.02 2.08 16 50 H 0.09 2.12 8.10 -2.39 -0.02 2.10 16 Total: -1.00 -75.83 402.43 2.95 -72.89 By element: Atomic # 1 Polarization: 9.25 SS G_CDS: 0.33 Total: 9.57 kcal Atomic # 6 Polarization: -7.03 SS G_CDS: 6.16 Total: -0.87 kcal Atomic # 7 Polarization: -108.76 SS G_CDS: -5.53 Total: -114.28 kcal Atomic # 8 Polarization: -14.14 SS G_CDS: -0.05 Total: -14.18 kcal Atomic # 14 Polarization: 44.84 SS G_CDS: 2.03 Total: 46.87 kcal Total: -75.83 2.95 -72.89 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001160529428.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.317 kcal (2) G-P(sol) polarization free energy of solvation -75.834 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.946 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.888 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds