Wall clock time and date at job start Wed Apr 1 2020 03:24:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 N 1.30089 * 124.98079 * 2 1 4 4 C 1.35858 * 109.53383 * 180.02562 * 3 2 1 5 5 C 1.39717 * 133.50794 * 180.02562 * 4 3 2 6 6 C 1.37839 * 120.10810 * 179.97438 * 5 4 3 7 7 C 1.38328 * 120.72658 * 359.79914 * 6 5 4 8 8 C 1.39398 * 120.28031 * 0.46462 * 7 6 5 9 9 C 1.47535 * 120.24833 * 179.77882 * 8 7 6 10 10 O 1.21587 * 119.99689 * 179.72407 * 9 8 7 11 11 N 1.34779 * 119.99631 * 359.71789 * 9 8 7 12 12 C 1.46500 * 119.99741 * 180.02562 * 11 9 8 13 13 H 1.09000 * 109.47175 * 35.00237 * 12 11 9 14 14 C 1.53006 * 109.46998 * 275.00368 * 12 11 9 15 15 C 1.52997 * 109.47204 * 155.00342 * 12 11 9 16 16 C 1.52996 * 109.46894 * 295.00302 * 15 12 11 17 17 C 1.53000 * 109.47246 * 179.97438 * 16 15 12 18 18 C 1.52997 * 109.47427 * 179.97438 * 17 16 15 19 19 N 1.46505 * 109.47099 * 180.02562 * 18 17 16 20 20 C 1.36939 * 119.99874 * 180.02562 * 19 18 17 21 21 H 1.08000 * 120.00229 * 359.97438 * 20 19 18 22 22 C 1.38813 * 119.99772 * 179.97438 * 20 19 18 23 23 N 1.31625 * 119.99779 * 179.97438 * 22 20 19 24 24 Si 1.86793 * 120.00246 * 359.97438 * 22 20 19 25 25 H 1.48502 * 109.47177 * 90.00010 * 24 22 20 26 26 H 1.48498 * 109.47333 * 210.00194 * 24 22 20 27 27 H 1.48506 * 109.46938 * 330.00143 * 24 22 20 28 28 C 1.40194 * 119.50467 * 359.49963 * 8 7 6 29 29 N 1.36117 * 124.97617 * 180.02562 * 2 1 3 30 30 H 0.97004 * 126.31186 * 359.97438 * 29 2 1 31 31 H 1.09001 * 109.46887 * 269.99914 * 1 2 3 32 32 H 1.09000 * 109.46775 * 29.99609 * 1 2 3 33 33 H 1.08994 * 109.47471 * 149.99408 * 1 2 3 34 34 H 1.08003 * 119.94331 * 359.97438 * 5 4 3 35 35 H 1.07996 * 119.63318 * 180.02562 * 6 5 4 36 36 H 1.07994 * 119.85941 * 180.26329 * 7 6 5 37 37 H 0.96997 * 120.00149 * 0.02562 * 11 9 8 38 38 H 1.09001 * 109.46801 * 60.00058 * 14 12 11 39 39 H 1.09001 * 109.46998 * 179.97438 * 14 12 11 40 40 H 1.09000 * 109.47050 * 299.99945 * 14 12 11 41 41 H 1.09001 * 109.47096 * 54.99991 * 15 12 11 42 42 H 1.08994 * 109.47065 * 175.00150 * 15 12 11 43 43 H 1.09001 * 109.46995 * 299.99751 * 16 15 12 44 44 H 1.08998 * 109.47867 * 60.00073 * 16 15 12 45 45 H 1.09001 * 109.46952 * 299.99816 * 17 16 15 46 46 H 1.09004 * 109.47403 * 59.99668 * 17 16 15 47 47 H 1.09001 * 109.47187 * 300.00018 * 18 17 16 48 48 H 1.09003 * 109.46799 * 60.00212 * 18 17 16 49 49 H 0.96998 * 119.99764 * 359.97438 * 19 18 17 50 50 H 0.96993 * 119.99908 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2529 1.0659 0.0000 4 6 3.5624 0.7040 -0.0006 5 6 4.7594 1.4246 -0.0004 6 6 5.9668 0.7595 -0.0006 7 6 6.0121 -0.6230 0.0032 8 6 4.8321 -1.3650 -0.0025 9 6 4.8813 -2.8395 -0.0035 10 8 3.8492 -3.4822 -0.0034 11 7 6.0704 -3.4740 -0.0045 12 6 6.1194 -4.9382 -0.0060 13 1 5.2900 -5.3289 -0.5956 14 6 6.0112 -5.4535 1.4306 15 6 7.4428 -5.4037 -0.6165 16 6 7.4962 -4.9953 -2.0900 17 6 8.8199 -5.4602 -2.7004 18 6 8.8731 -5.0524 -4.1741 19 7 10.1404 -5.4981 -4.7587 20 6 10.4139 -5.2432 -6.0760 21 1 9.6952 -4.7139 -6.6841 22 6 11.6148 -5.6650 -6.6297 23 7 11.8775 -5.4204 -7.8961 24 14 12.8581 -6.5798 -5.5778 25 1 12.5951 -8.0392 -5.6570 26 1 14.2292 -6.2964 -6.0728 27 1 12.7385 -6.1311 -4.1672 28 6 3.5981 -0.6997 -0.0014 29 7 2.2873 -1.1153 -0.0005 30 1 1.9761 -2.0341 -0.0006 31 1 -0.3633 0.0000 1.0277 32 1 -0.3633 0.8900 -0.5138 33 1 -0.3634 -0.8899 -0.5139 34 1 4.7386 2.5044 0.0000 35 1 6.8874 1.3241 0.0000 36 1 6.9659 -1.1297 0.0072 37 1 6.8938 -2.9612 -0.0043 38 1 5.0683 -5.1219 1.8655 39 1 6.0471 -6.5430 1.4294 40 1 6.8406 -5.0629 2.0201 41 1 8.2723 -4.9416 -0.0811 42 1 7.5181 -6.4881 -0.5370 43 1 6.6667 -5.4574 -2.6253 44 1 7.4209 -3.9109 -2.1696 45 1 9.6491 -4.9978 -2.1650 46 1 8.8957 -6.5447 -2.6209 47 1 8.0439 -5.5152 -4.7093 48 1 8.7972 -3.9680 -4.2539 49 1 10.7859 -5.9732 -4.2124 50 1 12.7168 -5.7148 -8.2829 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001176024273.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:24:08 Heat of formation + Delta-G solvation = 22.923599 kcal Electronic energy + Delta-G solvation = -28916.241237 eV Core-core repulsion = 24943.418639 eV Total energy + Delta-G solvation = -3972.822598 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.58869 -40.17678 -37.64713 -37.06386 -35.47893 -33.54263 -33.34244 -32.04244 -31.64949 -30.86139 -29.91510 -28.04900 -27.81022 -24.65390 -23.89625 -22.74340 -21.94595 -21.34506 -21.03374 -20.91593 -20.74649 -18.36555 -17.96703 -17.49595 -16.84200 -16.45286 -15.99760 -15.49901 -15.24587 -15.15324 -14.64277 -14.55193 -14.39451 -14.17530 -13.66901 -13.58179 -13.56064 -13.30601 -13.14928 -13.07993 -12.74834 -12.50977 -12.41432 -12.31137 -11.96554 -11.93901 -11.71359 -11.50308 -11.21442 -11.02547 -10.91440 -10.86648 -10.64586 -10.44490 -10.37060 -10.14041 -10.10630 -9.58714 -9.41550 -8.88674 -8.75324 -8.54493 -7.21989 -5.76113 -3.11440 0.17574 1.09948 2.07413 2.55599 2.77230 2.81638 3.36816 3.39518 3.44650 3.52665 3.68716 4.17119 4.35371 4.47494 4.50456 4.59390 4.71069 4.77201 4.80166 4.85404 4.96435 4.97917 5.03496 5.13559 5.26025 5.29078 5.33081 5.35456 5.45273 5.50337 5.54524 5.55874 5.61727 5.74299 5.82090 5.86703 5.97041 5.99340 6.03079 6.04449 6.08767 6.15655 6.24903 6.33508 6.38619 6.76612 6.80259 6.98346 7.17099 7.47327 7.85351 8.00859 8.43196 9.22550 9.94954 10.15222 11.42445 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.013436 B = 0.001954 C = 0.001838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2083.398298 B =14327.071859 C =15234.418386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.282 3.718 3 N -0.491 5.491 4 C 0.036 3.964 5 C -0.034 4.034 6 C -0.138 4.138 7 C -0.060 4.060 8 C -0.133 4.133 9 C 0.565 3.435 10 O -0.553 6.553 11 N -0.714 5.714 12 C 0.141 3.859 13 H 0.090 0.910 14 C -0.163 4.163 15 C -0.128 4.128 16 C -0.115 4.115 17 C -0.129 4.129 18 C 0.156 3.844 19 N -0.758 5.758 20 C -0.244 4.244 21 H 0.089 0.911 22 C 0.002 3.998 23 N -0.935 5.935 24 Si 0.887 3.113 25 H -0.284 1.284 26 H -0.291 1.291 27 H -0.278 1.278 28 C 0.102 3.898 29 N -0.582 5.582 30 H 0.433 0.567 31 H 0.089 0.911 32 H 0.098 0.902 33 H 0.082 0.918 34 H 0.136 0.864 35 H 0.139 0.861 36 H 0.135 0.865 37 H 0.401 0.599 38 H 0.058 0.942 39 H 0.067 0.933 40 H 0.057 0.943 41 H 0.069 0.931 42 H 0.081 0.919 43 H 0.063 0.937 44 H 0.062 0.938 45 H 0.060 0.940 46 H 0.060 0.940 47 H 0.025 0.975 48 H 0.024 0.976 49 H 0.360 0.640 50 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.900 9.811 24.670 33.179 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.015 3.985 3 N -0.212 5.212 4 C -0.082 4.082 5 C -0.054 4.054 6 C -0.158 4.158 7 C -0.080 4.080 8 C -0.139 4.139 9 C 0.354 3.646 10 O -0.433 6.433 11 N -0.365 5.365 12 C 0.037 3.963 13 H 0.108 0.892 14 C -0.221 4.221 15 C -0.165 4.165 16 C -0.153 4.153 17 C -0.167 4.167 18 C 0.029 3.971 19 N -0.403 5.403 20 C -0.374 4.374 21 H 0.107 0.893 22 C -0.194 4.194 23 N -0.583 5.583 24 Si 0.717 3.283 25 H -0.211 1.211 26 H -0.217 1.217 27 H -0.204 1.204 28 C -0.012 4.012 29 N -0.194 5.194 30 H 0.274 0.726 31 H 0.108 0.892 32 H 0.117 0.883 33 H 0.101 0.899 34 H 0.153 0.847 35 H 0.157 0.843 36 H 0.153 0.847 37 H 0.237 0.763 38 H 0.077 0.923 39 H 0.086 0.914 40 H 0.076 0.924 41 H 0.087 0.913 42 H 0.099 0.901 43 H 0.082 0.918 44 H 0.081 0.919 45 H 0.079 0.921 46 H 0.079 0.921 47 H 0.043 0.957 48 H 0.042 0.958 49 H 0.193 0.807 50 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -20.918 10.279 24.425 33.761 hybrid contribution 1.640 -1.707 0.559 2.432 sum -19.279 8.572 24.984 32.701 Atomic orbital electron populations 1.20407 0.83920 1.04955 1.04391 1.23750 0.95928 0.81003 0.97845 1.70485 1.00492 1.27518 1.22725 1.19075 0.92413 0.89856 1.06865 1.20500 0.88971 1.00170 0.95721 1.20862 0.97824 0.93859 1.03259 1.21162 0.96264 0.94359 0.96213 1.18845 0.91061 0.92427 1.11594 1.18124 0.83842 0.86928 0.75726 1.90684 1.33472 1.67910 1.51245 1.45989 1.08142 1.07758 1.74627 1.21082 0.99497 0.78884 0.96844 0.89172 1.22177 1.02209 1.01484 0.96234 1.21949 0.95788 1.02237 0.96572 1.21520 0.98312 1.01298 0.94183 1.21777 0.96688 1.01088 0.97169 1.20630 0.89038 0.97008 0.90436 1.42735 1.17623 1.69938 1.10052 1.19089 1.02150 1.30948 0.85201 0.89282 1.24698 0.97803 1.01019 0.95882 1.69708 1.25142 1.51875 1.11586 0.86508 0.81665 0.80149 0.79968 1.21100 1.21714 1.20386 1.18545 0.84890 0.94614 1.03179 1.43157 1.04577 1.10746 1.60933 0.72558 0.89199 0.88346 0.89929 0.84661 0.84297 0.84714 0.76279 0.92310 0.91409 0.92402 0.91271 0.90086 0.91778 0.91925 0.92137 0.92085 0.95719 0.95766 0.80743 0.93082 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.36 10.51 36.01 0.38 0.02 16 2 C 0.28 2.61 8.08 -154.76 -1.25 1.36 16 3 N -0.49 -5.72 11.28 -8.23 -0.09 -5.82 16 4 C 0.04 0.42 7.22 -84.71 -0.61 -0.20 16 5 C -0.03 -0.31 10.09 -39.18 -0.40 -0.70 16 6 C -0.14 -1.02 9.99 -39.69 -0.40 -1.41 16 7 C -0.06 -0.47 9.53 -39.12 -0.37 -0.84 16 8 C -0.13 -1.38 5.88 -104.94 -0.62 -1.99 16 9 C 0.57 6.21 7.73 -12.47 -0.10 6.11 16 10 O -0.55 -7.38 14.95 5.29 0.08 -7.30 16 11 N -0.71 -6.19 4.48 -54.85 -0.25 -6.43 16 12 C 0.14 1.24 2.57 -67.93 -0.17 1.07 16 13 H 0.09 0.96 7.58 -51.93 -0.39 0.57 16 14 C -0.16 -1.29 9.48 37.16 0.35 -0.94 16 15 C -0.13 -1.09 4.75 -26.73 -0.13 -1.22 16 16 C -0.11 -1.29 5.10 -26.73 -0.14 -1.42 16 17 C -0.13 -1.86 5.33 -26.73 -0.14 -2.00 16 18 C 0.16 3.03 6.26 -4.04 -0.03 3.01 16 19 N -0.76 -18.43 5.41 -59.90 -0.32 -18.76 16 20 C -0.24 -7.08 10.47 -15.06 -0.16 -7.24 16 21 H 0.09 2.77 8.06 -52.49 -0.42 2.35 16 22 C 0.00 0.05 5.50 -17.43 -0.10 -0.05 16 23 N -0.93 -29.77 13.97 55.49 0.78 -29.00 16 24 Si 0.89 22.29 27.73 -169.99 -4.71 17.58 16 25 H -0.28 -7.08 7.11 56.52 0.40 -6.68 16 26 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 27 H -0.28 -6.53 6.52 56.52 0.37 -6.16 16 28 C 0.10 1.16 6.88 -83.77 -0.58 0.59 16 29 N -0.58 -5.83 6.00 -7.81 -0.05 -5.88 16 30 H 0.43 3.90 7.72 -40.82 -0.32 3.59 16 31 H 0.09 0.29 8.14 -51.93 -0.42 -0.13 16 32 H 0.10 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.08 0.24 8.14 -51.93 -0.42 -0.18 16 34 H 0.14 0.97 8.06 -52.48 -0.42 0.55 16 35 H 0.14 0.65 8.06 -52.49 -0.42 0.23 16 36 H 0.14 0.69 6.39 -52.49 -0.34 0.36 16 37 H 0.40 2.65 6.63 -40.82 -0.27 2.38 16 38 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 39 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 40 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 41 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 42 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 43 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 44 H 0.06 0.69 7.75 -51.93 -0.40 0.29 16 45 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 46 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 47 H 0.02 0.50 8.14 -51.93 -0.42 0.07 16 48 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 49 H 0.36 8.45 5.53 -40.82 -0.23 8.23 16 50 H 0.26 7.83 8.31 -40.82 -0.34 7.49 16 LS Contribution 409.88 15.07 6.18 6.18 Total: -1.00 -36.85 409.88 -10.71 -47.57 By element: Atomic # 1 Polarization: 15.60 SS G_CDS: -7.88 Total: 7.72 kcal Atomic # 6 Polarization: -1.42 SS G_CDS: -4.45 Total: -5.87 kcal Atomic # 7 Polarization: -65.95 SS G_CDS: 0.07 Total: -65.88 kcal Atomic # 8 Polarization: -7.38 SS G_CDS: 0.08 Total: -7.30 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -4.71 Total: 17.58 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -36.85 -10.71 -47.57 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001176024273.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.492 kcal (2) G-P(sol) polarization free energy of solvation -36.854 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.638 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.714 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.569 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.924 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds