Wall clock time and date at job start Wed Apr 1 2020 03:24:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 N 1.30089 * 124.98079 * 2 1 4 4 C 1.35858 * 109.53383 * 180.02562 * 3 2 1 5 5 C 1.39717 * 133.50794 * 180.02562 * 4 3 2 6 6 C 1.37839 * 120.10810 * 179.97438 * 5 4 3 7 7 C 1.38328 * 120.72658 * 359.79914 * 6 5 4 8 8 C 1.39398 * 120.28031 * 0.46462 * 7 6 5 9 9 C 1.47535 * 120.24833 * 179.77882 * 8 7 6 10 10 O 1.21587 * 119.99689 * 179.72407 * 9 8 7 11 11 N 1.34779 * 119.99631 * 359.71789 * 9 8 7 12 12 C 1.46500 * 119.99741 * 180.02562 * 11 9 8 13 13 H 1.09000 * 109.47175 * 35.00237 * 12 11 9 14 14 C 1.53006 * 109.46998 * 275.00368 * 12 11 9 15 15 C 1.52997 * 109.47204 * 155.00342 * 12 11 9 16 16 C 1.52996 * 109.46894 * 295.00302 * 15 12 11 17 17 C 1.53000 * 109.47246 * 179.97438 * 16 15 12 18 18 C 1.52997 * 109.47427 * 179.97438 * 17 16 15 19 19 N 1.46505 * 109.47099 * 180.02562 * 18 17 16 20 20 C 1.36939 * 119.99874 * 180.02562 * 19 18 17 21 21 H 1.08000 * 120.00229 * 359.97438 * 20 19 18 22 22 C 1.38813 * 119.99772 * 179.97438 * 20 19 18 23 23 N 1.31625 * 119.99779 * 179.97438 * 22 20 19 24 24 Si 1.86793 * 120.00246 * 359.97438 * 22 20 19 25 25 H 1.48502 * 109.47177 * 90.00010 * 24 22 20 26 26 H 1.48498 * 109.47333 * 210.00194 * 24 22 20 27 27 H 1.48506 * 109.46938 * 330.00143 * 24 22 20 28 28 C 1.40194 * 119.50467 * 359.49963 * 8 7 6 29 29 N 1.36117 * 124.97617 * 180.02562 * 2 1 3 30 30 H 0.97004 * 126.31186 * 359.97438 * 29 2 1 31 31 H 1.09001 * 109.46887 * 269.99914 * 1 2 3 32 32 H 1.09000 * 109.46775 * 29.99609 * 1 2 3 33 33 H 1.08994 * 109.47471 * 149.99408 * 1 2 3 34 34 H 1.08003 * 119.94331 * 359.97438 * 5 4 3 35 35 H 1.07996 * 119.63318 * 180.02562 * 6 5 4 36 36 H 1.07994 * 119.85941 * 180.26329 * 7 6 5 37 37 H 0.96997 * 120.00149 * 0.02562 * 11 9 8 38 38 H 1.09001 * 109.46801 * 60.00058 * 14 12 11 39 39 H 1.09001 * 109.46998 * 179.97438 * 14 12 11 40 40 H 1.09000 * 109.47050 * 299.99945 * 14 12 11 41 41 H 1.09001 * 109.47096 * 54.99991 * 15 12 11 42 42 H 1.08994 * 109.47065 * 175.00150 * 15 12 11 43 43 H 1.09001 * 109.46995 * 299.99751 * 16 15 12 44 44 H 1.08998 * 109.47867 * 60.00073 * 16 15 12 45 45 H 1.09001 * 109.46952 * 299.99816 * 17 16 15 46 46 H 1.09004 * 109.47403 * 59.99668 * 17 16 15 47 47 H 1.09001 * 109.47187 * 300.00018 * 18 17 16 48 48 H 1.09003 * 109.46799 * 60.00212 * 18 17 16 49 49 H 0.96998 * 119.99764 * 359.97438 * 19 18 17 50 50 H 0.96993 * 119.99908 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2529 1.0659 0.0000 4 6 3.5624 0.7040 -0.0006 5 6 4.7594 1.4246 -0.0004 6 6 5.9668 0.7595 -0.0006 7 6 6.0121 -0.6230 0.0032 8 6 4.8321 -1.3650 -0.0025 9 6 4.8813 -2.8395 -0.0035 10 8 3.8492 -3.4822 -0.0034 11 7 6.0704 -3.4740 -0.0045 12 6 6.1194 -4.9382 -0.0060 13 1 5.2900 -5.3289 -0.5956 14 6 6.0112 -5.4535 1.4306 15 6 7.4428 -5.4037 -0.6165 16 6 7.4962 -4.9953 -2.0900 17 6 8.8199 -5.4602 -2.7004 18 6 8.8731 -5.0524 -4.1741 19 7 10.1404 -5.4981 -4.7587 20 6 10.4139 -5.2432 -6.0760 21 1 9.6952 -4.7139 -6.6841 22 6 11.6148 -5.6650 -6.6297 23 7 11.8775 -5.4204 -7.8961 24 14 12.8581 -6.5798 -5.5778 25 1 12.5951 -8.0392 -5.6570 26 1 14.2292 -6.2964 -6.0728 27 1 12.7385 -6.1311 -4.1672 28 6 3.5981 -0.6997 -0.0014 29 7 2.2873 -1.1153 -0.0005 30 1 1.9761 -2.0341 -0.0006 31 1 -0.3633 0.0000 1.0277 32 1 -0.3633 0.8900 -0.5138 33 1 -0.3634 -0.8899 -0.5139 34 1 4.7386 2.5044 0.0000 35 1 6.8874 1.3241 0.0000 36 1 6.9659 -1.1297 0.0072 37 1 6.8938 -2.9612 -0.0043 38 1 5.0683 -5.1219 1.8655 39 1 6.0471 -6.5430 1.4294 40 1 6.8406 -5.0629 2.0201 41 1 8.2723 -4.9416 -0.0811 42 1 7.5181 -6.4881 -0.5370 43 1 6.6667 -5.4574 -2.6253 44 1 7.4209 -3.9109 -2.1696 45 1 9.6491 -4.9978 -2.1650 46 1 8.8957 -6.5447 -2.6209 47 1 8.0439 -5.5152 -4.7093 48 1 8.7972 -3.9680 -4.2539 49 1 10.7859 -5.9732 -4.2124 50 1 12.7168 -5.7148 -8.2829 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001176024273.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:24:07 Heat of formation + Delta-G solvation = -1.768749 kcal Electronic energy + Delta-G solvation = -28917.311977 eV Core-core repulsion = 24943.418639 eV Total energy + Delta-G solvation = -3973.893338 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -43.28473 -40.95679 -38.35016 -37.99799 -36.96288 -34.82274 -34.21911 -33.33481 -32.40488 -32.11400 -30.67151 -29.05952 -28.62226 -25.88856 -24.95828 -23.49925 -23.35325 -22.23470 -22.03155 -21.81272 -21.53135 -19.63519 -19.05295 -18.64151 -17.57547 -17.18219 -16.72208 -16.63389 -16.32857 -16.08615 -15.92153 -15.80681 -15.26303 -15.15910 -14.88200 -14.66269 -14.33481 -14.22247 -14.16296 -13.88940 -13.58004 -13.50994 -13.15121 -13.03111 -12.95653 -12.93413 -12.86538 -12.55081 -12.48347 -12.26856 -12.08437 -11.89054 -11.79525 -11.75917 -11.53517 -11.45600 -11.41341 -10.97778 -10.92516 -10.18685 -9.43659 -9.31637 -9.24525 -8.04326 -5.38764 -0.50804 0.41034 1.37037 1.37376 1.42493 1.50113 1.89811 2.01229 2.09632 2.48170 2.81915 3.10252 3.26579 3.45744 3.53198 3.77054 3.88392 3.92901 4.01930 4.07526 4.16624 4.19654 4.32471 4.33714 4.37999 4.54129 4.57168 4.63204 4.66009 4.73589 4.77573 4.86855 4.89617 4.91702 4.97367 5.00039 5.02465 5.09480 5.21092 5.25112 5.30589 5.35300 5.38652 5.40841 5.50073 5.54679 5.73376 5.76713 6.19927 6.31243 6.47174 6.76169 7.06640 7.11209 7.82638 8.03350 9.17312 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.013436 B = 0.001954 C = 0.001838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2083.398298 B =14327.071859 C =15234.418386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.279 3.721 3 N -0.524 5.524 4 C 0.008 3.992 5 C -0.045 4.045 6 C -0.130 4.130 7 C -0.052 4.052 8 C -0.153 4.153 9 C 0.562 3.438 10 O -0.586 6.586 11 N -0.703 5.703 12 C 0.143 3.857 13 H 0.068 0.932 14 C -0.157 4.157 15 C -0.116 4.116 16 C -0.109 4.109 17 C -0.115 4.115 18 C 0.149 3.851 19 N -0.760 5.760 20 C -0.242 4.242 21 H 0.050 0.950 22 C -0.069 4.069 23 N -0.985 5.985 24 Si 0.963 3.037 25 H -0.277 1.277 26 H -0.294 1.294 27 H -0.246 1.246 28 C 0.075 3.925 29 N -0.586 5.586 30 H 0.434 0.566 31 H 0.106 0.894 32 H 0.104 0.896 33 H 0.100 0.900 34 H 0.149 0.851 35 H 0.173 0.827 36 H 0.166 0.834 37 H 0.413 0.587 38 H 0.039 0.961 39 H 0.078 0.922 40 H 0.071 0.929 41 H 0.089 0.911 42 H 0.091 0.909 43 H 0.052 0.948 44 H 0.064 0.936 45 H 0.073 0.927 46 H 0.066 0.934 47 H 0.014 0.986 48 H 0.020 0.980 49 H 0.368 0.632 50 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.438 9.289 27.410 34.316 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.012 3.988 3 N -0.246 5.246 4 C -0.110 4.110 5 C -0.064 4.064 6 C -0.150 4.150 7 C -0.072 4.072 8 C -0.160 4.160 9 C 0.351 3.649 10 O -0.468 6.468 11 N -0.354 5.354 12 C 0.039 3.961 13 H 0.086 0.914 14 C -0.215 4.215 15 C -0.154 4.154 16 C -0.147 4.147 17 C -0.153 4.153 18 C 0.023 3.977 19 N -0.406 5.406 20 C -0.373 4.373 21 H 0.068 0.932 22 C -0.260 4.260 23 N -0.635 5.635 24 Si 0.789 3.211 25 H -0.203 1.203 26 H -0.221 1.221 27 H -0.171 1.171 28 C -0.039 4.039 29 N -0.198 5.198 30 H 0.276 0.724 31 H 0.125 0.875 32 H 0.122 0.878 33 H 0.118 0.882 34 H 0.167 0.833 35 H 0.190 0.810 36 H 0.183 0.817 37 H 0.251 0.749 38 H 0.058 0.942 39 H 0.097 0.903 40 H 0.090 0.910 41 H 0.108 0.892 42 H 0.109 0.891 43 H 0.071 0.929 44 H 0.083 0.917 45 H 0.092 0.908 46 H 0.085 0.915 47 H 0.032 0.968 48 H 0.038 0.962 49 H 0.201 0.799 50 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -19.465 9.766 27.212 34.853 hybrid contribution 1.101 -1.470 -0.368 1.873 sum -18.363 8.296 26.843 33.565 Atomic orbital electron populations 1.20607 0.80955 1.06078 1.05773 1.24568 0.97493 0.80368 0.96345 1.70468 1.01029 1.28679 1.24434 1.19525 0.93154 0.90394 1.07914 1.20853 0.88914 1.01047 0.95592 1.21266 0.98405 0.93881 1.01485 1.21573 0.96590 0.94723 0.94326 1.19000 0.91660 0.92256 1.13036 1.18303 0.83984 0.87259 0.75400 1.90659 1.34664 1.68563 1.52892 1.45911 1.07999 1.07859 1.73658 1.21033 0.98994 0.78797 0.97258 0.91382 1.22115 1.01773 1.02205 0.95384 1.21857 0.96031 1.03028 0.94455 1.21446 0.96139 1.01325 0.95800 1.21660 0.98779 1.01533 0.93356 1.20856 0.86562 0.96560 0.93728 1.42739 1.19418 1.70029 1.08400 1.19060 1.01354 1.29827 0.87070 0.93160 1.25644 1.00360 1.02620 0.97388 1.69908 1.25929 1.53722 1.13985 0.85290 0.77800 0.78571 0.79398 1.20332 1.22075 1.17051 1.18903 0.85730 0.95033 1.04214 1.43240 1.04532 1.10971 1.61045 0.72435 0.87544 0.87774 0.88157 0.83328 0.80995 0.81692 0.74855 0.94161 0.90315 0.90958 0.89210 0.89090 0.92889 0.91703 0.90837 0.91527 0.96812 0.96192 0.79876 0.93252 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.67 10.51 71.24 0.75 0.08 16 2 C 0.28 5.36 8.08 137.90 1.11 6.47 16 3 N -0.52 -12.68 11.28 -179.95 -2.03 -14.71 16 4 C 0.01 0.18 7.22 39.41 0.28 0.47 16 5 C -0.04 -0.78 10.09 22.53 0.23 -0.55 16 6 C -0.13 -1.65 9.99 22.20 0.22 -1.43 16 7 C -0.05 -0.72 9.53 22.57 0.22 -0.50 16 8 C -0.15 -3.12 5.88 -20.07 -0.12 -3.23 16 9 C 0.56 12.13 7.73 86.69 0.67 12.80 16 10 O -0.59 -16.03 14.95 -3.99 -0.06 -16.09 16 11 N -0.70 -10.90 4.48 -445.69 -2.00 -12.90 16 12 C 0.14 2.25 2.57 44.99 0.12 2.36 16 13 H 0.07 1.41 7.58 -2.39 -0.02 1.39 16 14 C -0.16 -2.14 9.48 71.98 0.68 -1.46 16 15 C -0.12 -1.58 4.75 30.59 0.15 -1.43 16 16 C -0.11 -2.16 5.10 30.59 0.16 -2.00 16 17 C -0.12 -2.96 5.33 30.59 0.16 -2.80 16 18 C 0.15 5.62 6.26 86.38 0.54 6.16 16 19 N -0.76 -35.91 5.41 -343.44 -1.86 -37.76 16 20 C -0.24 -14.20 10.47 84.03 0.88 -13.32 16 21 H 0.05 3.26 8.06 -2.91 -0.02 3.24 16 22 C -0.07 -4.12 5.50 84.86 0.47 -3.65 16 23 N -0.99 -63.99 13.97 21.65 0.30 -63.69 16 24 Si 0.96 45.19 27.73 68.60 1.90 47.09 16 25 H -0.28 -12.65 7.11 99.48 0.71 -11.95 16 26 H -0.29 -13.91 7.11 99.48 0.71 -13.20 16 27 H -0.25 -10.18 6.52 99.48 0.65 -9.53 16 28 C 0.07 1.77 6.88 39.26 0.27 2.04 16 29 N -0.59 -12.34 6.00 -178.61 -1.07 -13.41 16 30 H 0.43 8.40 7.72 -92.71 -0.72 7.69 16 31 H 0.11 0.60 8.14 -2.39 -0.02 0.58 16 32 H 0.10 0.81 8.14 -2.39 -0.02 0.79 16 33 H 0.10 0.51 8.14 -2.39 -0.02 0.49 16 34 H 0.15 2.03 8.06 -2.91 -0.02 2.01 16 35 H 0.17 0.98 8.06 -2.91 -0.02 0.96 16 36 H 0.17 1.11 6.39 -2.91 -0.02 1.09 16 37 H 0.41 4.18 6.63 -92.71 -0.61 3.57 16 38 H 0.04 0.71 8.14 -2.39 -0.02 0.69 16 39 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 40 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 41 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 42 H 0.09 1.13 8.14 -2.39 -0.02 1.12 16 43 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 44 H 0.06 1.26 7.75 -2.39 -0.02 1.24 16 45 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 46 H 0.07 1.66 8.14 -2.39 -0.02 1.65 16 47 H 0.01 0.55 8.14 -2.39 -0.02 0.53 16 48 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 49 H 0.37 16.14 5.53 -92.71 -0.51 15.62 16 50 H 0.26 15.90 8.31 -92.71 -0.77 15.13 16 Total: -1.00 -83.23 409.88 1.04 -82.18 By element: Atomic # 1 Polarization: 30.22 SS G_CDS: -0.93 Total: 29.29 kcal Atomic # 6 Polarization: -6.79 SS G_CDS: 6.79 Total: 0.00 kcal Atomic # 7 Polarization: -135.82 SS G_CDS: -6.65 Total: -142.47 kcal Atomic # 8 Polarization: -16.03 SS G_CDS: -0.06 Total: -16.09 kcal Atomic # 14 Polarization: 45.19 SS G_CDS: 1.90 Total: 47.09 kcal Total: -83.23 1.04 -82.18 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001176024273.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.414 kcal (2) G-P(sol) polarization free energy of solvation -83.228 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.814 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.045 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.183 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.769 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds