Wall clock time and date at job start Wed Apr 1 2020 03:09:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.31809 * 119.12404 * 2 1 4 4 C 1.32313 * 120.81960 * 179.72504 * 3 2 1 5 5 C 1.38624 * 119.10338 * 0.56884 * 4 3 2 6 6 C 1.38574 * 118.39673 * 359.43958 * 5 4 3 7 7 C 1.50702 * 120.44931 * 180.25863 * 6 5 4 8 8 C 1.52998 * 109.47366 * 125.00000 * 7 6 5 9 9 C 1.50707 * 109.47171 * 180.02562 * 8 7 6 10 10 O 1.21284 * 119.99723 * 359.97438 * 9 8 7 11 11 N 1.34766 * 119.99785 * 180.02562 * 9 8 7 12 12 C 1.46506 * 119.99610 * 179.97438 * 11 9 8 13 13 H 1.08993 * 112.88798 * 336.34321 * 12 11 9 14 14 C 1.53954 * 113.66380 * 107.81200 * 12 11 9 15 15 C 1.53944 * 87.29582 * 89.73518 * 14 12 11 16 16 H 1.09003 * 113.66593 * 270.26292 * 15 14 12 17 17 N 1.46503 * 113.74677 * 139.21868 * 15 14 12 18 18 C 1.36929 * 120.00382 * 107.77193 * 17 15 14 19 19 H 1.08001 * 120.00078 * 0.02562 * 18 17 15 20 20 C 1.38812 * 120.00615 * 180.02562 * 18 17 15 21 21 N 1.31612 * 120.00601 * 179.97438 * 20 18 17 22 22 Si 1.86807 * 119.99497 * 359.97438 * 20 18 17 23 23 H 1.48503 * 109.47209 * 89.99996 * 22 20 18 24 24 H 1.48499 * 109.46960 * 209.99713 * 22 20 18 25 25 H 1.48502 * 109.47315 * 329.99935 * 22 20 18 26 26 C 1.52906 * 86.78450 * 24.73318 * 15 14 12 27 27 C 1.52914 * 121.13367 * 100.81813 * 26 15 14 28 28 C 1.53951 * 86.78096 * 100.82229 * 27 26 15 29 29 C 1.52906 * 121.13833 * 209.37548 * 26 15 14 30 30 N 1.31790 * 119.12379 * 180.02562 * 2 1 3 31 31 H 1.09003 * 109.47255 * 269.98002 * 1 2 3 32 32 H 1.08996 * 109.47394 * 29.98497 * 1 2 3 33 33 H 1.09003 * 109.47323 * 149.98647 * 1 2 3 34 34 H 1.07999 * 120.44989 * 180.30667 * 4 3 2 35 35 H 1.08002 * 120.80485 * 179.72100 * 5 4 3 36 36 H 1.09000 * 109.47078 * 245.00246 * 7 6 5 37 37 H 1.09000 * 109.46818 * 4.99821 * 7 6 5 38 38 H 1.09000 * 109.47223 * 300.00158 * 8 7 6 39 39 H 1.09000 * 109.47298 * 60.00116 * 8 7 6 40 40 H 0.97000 * 120.00601 * 359.97438 * 11 9 8 41 41 H 1.08999 * 113.57684 * 204.34139 * 14 12 11 42 42 H 1.09006 * 113.57837 * 335.13483 * 14 12 11 43 43 H 0.97007 * 119.99971 * 287.77139 * 17 15 14 44 44 H 0.97003 * 120.00555 * 180.02562 * 21 20 18 45 45 H 1.09001 * 113.65738 * 215.29124 * 27 26 15 46 46 H 1.08997 * 113.66591 * 346.34647 * 27 26 15 47 47 H 1.09001 * 113.57837 * 270.12552 * 28 27 26 48 48 H 1.09006 * 113.65122 * 139.34818 * 28 27 26 49 49 H 1.09000 * 113.66627 * 13.65635 * 29 26 15 50 50 H 1.09000 * 113.66148 * 144.61405 * 29 26 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1485 1.1514 0.0000 4 6 3.4710 1.1906 0.0055 5 6 4.1809 -0.0001 -0.0008 6 6 3.4713 -1.1904 -0.0007 7 6 4.1961 -2.5116 -0.0015 8 6 3.7168 -3.3571 1.1802 9 6 4.4421 -4.6781 1.1797 10 8 5.2614 -4.9197 0.3186 11 7 4.1796 -5.5913 2.1354 12 6 4.8843 -6.8757 2.1346 13 1 5.2611 -7.1519 1.1498 14 6 5.9291 -7.0080 3.2575 15 6 4.8045 -7.5849 4.1363 16 1 4.2578 -6.8287 4.6996 17 7 5.2251 -8.7183 4.9639 18 6 5.3707 -8.5618 6.3164 19 1 5.1752 -7.6029 6.7732 20 6 5.7697 -9.6355 7.1005 21 7 5.9102 -9.4849 8.4004 22 14 6.1073 -11.2943 6.3105 23 1 7.5364 -11.3724 5.9145 24 1 5.8029 -12.3760 7.2813 25 1 5.2510 -11.4533 5.1077 26 6 4.1164 -7.9974 2.8347 27 6 4.1837 -9.4382 2.3269 28 6 2.7638 -9.6132 2.8954 29 6 2.5931 -8.0910 2.7408 30 7 2.1484 -1.1513 -0.0005 31 1 -0.3634 -0.0004 1.0277 32 1 -0.3634 0.8901 -0.5136 33 1 -0.3634 -0.8899 -0.5140 34 1 3.9905 2.1374 0.0104 35 1 5.2609 -0.0002 -0.0011 36 1 3.9895 -3.0388 -0.9329 37 1 5.2684 -2.3377 0.0874 38 1 3.9233 -2.8299 2.1116 39 1 2.6444 -3.5309 1.0913 40 1 3.5241 -5.3982 2.8238 41 1 6.7199 -7.7245 3.0351 42 1 6.3119 -6.0508 3.6120 43 1 5.4004 -9.5797 4.5537 44 1 6.1894 -10.2352 8.9483 45 1 4.2330 -9.5174 1.2409 46 1 4.9350 -10.0454 2.8319 47 1 2.7475 -9.9508 3.9316 48 1 2.1033 -10.1937 2.2511 49 1 2.0736 -7.6220 3.5764 50 1 2.1952 -7.7901 1.7717 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001203222592.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:09:07 Heat of formation + Delta-G solvation = 60.870513 kcal Electronic energy + Delta-G solvation = -29431.518377 eV Core-core repulsion = 25460.341281 eV Total energy + Delta-G solvation = -3971.177096 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.47085 -40.75018 -39.14034 -35.52973 -35.07869 -34.17868 -33.77625 -32.47445 -31.65544 -30.38406 -28.90163 -26.43456 -25.61086 -24.65159 -24.24461 -23.52571 -22.32357 -21.69722 -20.72687 -20.04354 -18.45092 -17.98241 -17.46903 -17.13397 -16.36738 -16.11245 -15.66378 -15.52861 -15.48372 -15.16613 -14.94419 -14.54923 -14.04934 -13.94603 -13.48931 -13.33735 -13.08750 -12.92512 -12.71862 -12.68472 -12.53704 -12.37859 -12.21435 -12.10281 -11.94757 -11.59103 -11.55028 -11.20814 -11.02802 -10.96841 -10.86552 -10.73433 -10.27731 -10.14123 -9.97356 -9.86009 -9.73758 -9.69251 -9.57602 -9.49969 -8.91008 -8.76862 -7.31184 -5.82832 -3.18342 0.52341 0.68812 2.61987 3.08718 3.32524 3.35688 3.36278 3.41546 3.52131 3.71641 4.08482 4.47351 4.53429 4.64594 4.66941 4.74956 4.78376 4.84405 4.90462 4.94588 4.99883 5.09310 5.10680 5.12513 5.17211 5.30801 5.31879 5.45194 5.50827 5.52683 5.61959 5.66547 5.73727 5.79950 5.88346 5.91072 5.96243 6.03284 6.06630 6.16878 6.26386 6.30808 6.40591 6.54239 6.66135 6.70622 6.76745 6.91060 7.55573 7.74401 7.93248 8.23499 8.36842 9.14532 9.87072 10.07028 11.35278 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.017974 B = 0.002022 C = 0.001984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1557.468529 B =13845.094839 C =14106.843945 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C 0.319 3.681 3 N -0.527 5.527 4 C 0.153 3.847 5 C -0.232 4.232 6 C 0.184 3.816 7 C -0.055 4.055 8 C -0.132 4.132 9 C 0.516 3.484 10 O -0.546 6.546 11 N -0.703 5.703 12 C 0.131 3.869 13 H 0.096 0.904 14 C -0.174 4.174 15 C 0.198 3.802 16 H 0.084 0.916 17 N -0.733 5.733 18 C -0.247 4.247 19 H 0.090 0.910 20 C 0.006 3.994 21 N -0.932 5.932 22 Si 0.880 3.120 23 H -0.284 1.284 24 H -0.290 1.290 25 H -0.275 1.275 26 C -0.125 4.125 27 C -0.112 4.112 28 C -0.134 4.134 29 C -0.123 4.123 30 N -0.516 5.516 31 H 0.087 0.913 32 H 0.085 0.915 33 H 0.086 0.914 34 H 0.169 0.831 35 H 0.149 0.851 36 H 0.097 0.903 37 H 0.093 0.907 38 H 0.092 0.908 39 H 0.105 0.895 40 H 0.402 0.598 41 H 0.084 0.916 42 H 0.063 0.937 43 H 0.364 0.636 44 H 0.260 0.740 45 H 0.078 0.922 46 H 0.070 0.930 47 H 0.087 0.913 48 H 0.059 0.941 49 H 0.067 0.933 50 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.710 17.167 -18.934 27.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.052 3.948 3 N -0.242 5.242 4 C -0.013 4.013 5 C -0.254 4.254 6 C 0.038 3.962 7 C -0.093 4.093 8 C -0.173 4.173 9 C 0.302 3.698 10 O -0.424 6.424 11 N -0.352 5.352 12 C 0.025 3.975 13 H 0.114 0.886 14 C -0.216 4.216 15 C 0.086 3.914 16 H 0.102 0.898 17 N -0.373 5.373 18 C -0.377 4.377 19 H 0.108 0.892 20 C -0.190 4.190 21 N -0.579 5.579 22 Si 0.710 3.290 23 H -0.210 1.210 24 H -0.217 1.217 25 H -0.201 1.201 26 C -0.128 4.128 27 C -0.150 4.150 28 C -0.172 4.172 29 C -0.161 4.161 30 N -0.232 5.232 31 H 0.105 0.895 32 H 0.103 0.897 33 H 0.105 0.895 34 H 0.186 0.814 35 H 0.167 0.833 36 H 0.116 0.884 37 H 0.112 0.888 38 H 0.111 0.889 39 H 0.123 0.877 40 H 0.236 0.764 41 H 0.103 0.897 42 H 0.081 0.919 43 H 0.199 0.801 44 H 0.070 0.930 45 H 0.096 0.904 46 H 0.088 0.912 47 H 0.106 0.894 48 H 0.078 0.922 49 H 0.086 0.914 50 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -9.107 17.052 -19.264 27.291 hybrid contribution 1.107 -1.067 -0.005 1.537 sum -8.000 15.985 -19.270 26.284 Atomic orbital electron populations 1.20581 0.85650 1.04193 1.04027 1.23300 0.98237 0.83328 0.89937 1.68266 1.10238 1.30553 1.15149 1.23246 0.89669 0.98695 0.89662 1.22811 1.03140 0.94128 1.05330 1.21770 0.89588 0.95925 0.88910 1.20352 0.99366 0.89658 0.99960 1.21546 1.02353 0.93398 0.99980 1.20527 0.82564 0.85592 0.81091 1.90696 1.34848 1.79308 1.37554 1.45607 1.43284 1.16282 1.30070 1.21676 0.94023 0.82350 0.99441 0.88555 1.24234 0.98658 1.01560 0.97192 1.21269 0.92169 0.90381 0.87559 0.89817 1.42739 1.81090 1.08320 1.05123 1.19102 1.38943 0.98115 0.81554 0.89197 1.24676 1.01450 0.97584 0.95248 1.69691 1.53382 1.31179 1.03631 0.86625 0.78355 0.85427 0.78581 1.21015 1.21670 1.20150 1.23607 0.95307 0.94718 0.99154 1.22481 0.98020 0.94697 0.99791 1.22765 0.96306 0.96177 1.01912 1.22618 0.95367 0.96954 1.01159 1.68094 1.09554 1.30542 1.14970 0.89481 0.89662 0.89528 0.81417 0.83323 0.88431 0.88819 0.88925 0.87711 0.76402 0.89722 0.91859 0.80147 0.93004 0.90364 0.91154 0.89415 0.92209 0.91422 0.90714 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.55 10.32 36.00 0.37 -0.17 16 2 C 0.32 3.01 7.64 -157.19 -1.20 1.81 16 3 N -0.53 -5.01 10.33 -10.72 -0.11 -5.12 16 4 C 0.15 1.13 11.31 -17.20 -0.19 0.94 16 5 C -0.23 -1.69 9.80 -39.32 -0.39 -2.07 16 6 C 0.18 1.64 6.20 -82.25 -0.51 1.13 16 7 C -0.06 -0.47 4.94 -27.88 -0.14 -0.61 16 8 C -0.13 -1.16 5.57 -27.88 -0.16 -1.31 16 9 C 0.52 6.19 7.83 -10.99 -0.09 6.11 16 10 O -0.55 -8.48 15.58 5.55 0.09 -8.39 16 11 N -0.70 -8.28 5.05 -53.37 -0.27 -8.55 16 12 C 0.13 1.84 4.12 -67.48 -0.28 1.57 16 13 H 0.10 1.46 7.46 -51.93 -0.39 1.08 16 14 C -0.17 -2.87 7.69 -25.75 -0.20 -3.07 16 15 C 0.20 3.53 4.27 -67.49 -0.29 3.24 16 16 H 0.08 1.50 8.10 -51.93 -0.42 1.08 16 17 N -0.73 -16.38 5.13 -52.99 -0.27 -16.65 16 18 C -0.25 -6.70 10.45 -15.06 -0.16 -6.86 16 19 H 0.09 2.61 8.06 -52.49 -0.42 2.19 16 20 C 0.01 0.18 5.50 -17.43 -0.10 0.09 16 21 N -0.93 -28.68 13.97 55.49 0.78 -27.91 16 22 Si 0.88 21.60 27.74 -169.99 -4.71 16.89 16 23 H -0.28 -6.98 7.11 56.52 0.40 -6.57 16 24 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 25 H -0.28 -6.29 6.52 56.52 0.37 -5.92 16 26 C -0.13 -1.83 0.92 -154.71 -0.14 -1.97 16 27 C -0.11 -1.63 7.47 -26.28 -0.20 -1.83 16 28 C -0.13 -1.90 8.08 -25.75 -0.21 -2.10 16 29 C -0.12 -1.60 7.49 -26.29 -0.20 -1.80 16 30 N -0.52 -5.14 9.94 -6.99 -0.07 -5.21 16 31 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.17 0.69 8.06 -52.49 -0.42 0.27 16 35 H 0.15 0.71 8.01 -52.49 -0.42 0.29 16 36 H 0.10 0.92 8.10 -51.93 -0.42 0.50 16 37 H 0.09 0.76 7.90 -51.93 -0.41 0.35 16 38 H 0.09 0.72 8.14 -51.93 -0.42 0.29 16 39 H 0.10 0.86 7.98 -51.93 -0.41 0.45 16 40 H 0.40 4.01 8.62 -40.82 -0.35 3.65 16 41 H 0.08 1.47 8.14 -51.93 -0.42 1.04 16 42 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 43 H 0.36 8.08 3.78 -40.82 -0.15 7.92 16 44 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 45 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 46 H 0.07 1.15 6.42 -51.93 -0.33 0.82 16 47 H 0.09 1.45 8.14 -51.93 -0.42 1.02 16 48 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 49 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 50 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 LS Contribution 408.43 15.07 6.15 6.15 Total: -1.00 -33.76 408.43 -10.46 -44.22 By element: Atomic # 1 Polarization: 19.46 SS G_CDS: -7.98 Total: 11.48 kcal Atomic # 6 Polarization: -2.86 SS G_CDS: -4.06 Total: -6.92 kcal Atomic # 7 Polarization: -63.49 SS G_CDS: 0.05 Total: -63.43 kcal Atomic # 8 Polarization: -8.48 SS G_CDS: 0.09 Total: -8.39 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -4.71 Total: 16.89 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -33.76 -10.46 -44.22 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001203222592.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.089 kcal (2) G-P(sol) polarization free energy of solvation -33.761 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.328 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.457 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.218 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.871 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds