Wall clock time and date at job start Wed Apr 1 2020 03:09:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.31809 * 119.12404 * 2 1 4 4 C 1.32313 * 120.81960 * 179.72504 * 3 2 1 5 5 C 1.38624 * 119.10338 * 0.56884 * 4 3 2 6 6 C 1.38574 * 118.39673 * 359.43958 * 5 4 3 7 7 C 1.50702 * 120.44931 * 180.25863 * 6 5 4 8 8 C 1.52998 * 109.47366 * 125.00000 * 7 6 5 9 9 C 1.50707 * 109.47171 * 180.02562 * 8 7 6 10 10 O 1.21284 * 119.99723 * 359.97438 * 9 8 7 11 11 N 1.34766 * 119.99785 * 180.02562 * 9 8 7 12 12 C 1.46506 * 119.99610 * 179.97438 * 11 9 8 13 13 H 1.08993 * 112.88798 * 336.34321 * 12 11 9 14 14 C 1.53954 * 113.66380 * 107.81200 * 12 11 9 15 15 C 1.53944 * 87.29582 * 89.73518 * 14 12 11 16 16 H 1.09003 * 113.66593 * 270.26292 * 15 14 12 17 17 N 1.46503 * 113.74677 * 139.21868 * 15 14 12 18 18 C 1.36929 * 120.00382 * 107.77193 * 17 15 14 19 19 H 1.08001 * 120.00078 * 0.02562 * 18 17 15 20 20 C 1.38812 * 120.00615 * 180.02562 * 18 17 15 21 21 N 1.31612 * 120.00601 * 179.97438 * 20 18 17 22 22 Si 1.86807 * 119.99497 * 359.97438 * 20 18 17 23 23 H 1.48503 * 109.47209 * 89.99996 * 22 20 18 24 24 H 1.48499 * 109.46960 * 209.99713 * 22 20 18 25 25 H 1.48502 * 109.47315 * 329.99935 * 22 20 18 26 26 C 1.52906 * 86.78450 * 24.73318 * 15 14 12 27 27 C 1.52914 * 121.13367 * 100.81813 * 26 15 14 28 28 C 1.53951 * 86.78096 * 100.82229 * 27 26 15 29 29 C 1.52906 * 121.13833 * 209.37548 * 26 15 14 30 30 N 1.31790 * 119.12379 * 180.02562 * 2 1 3 31 31 H 1.09003 * 109.47255 * 269.98002 * 1 2 3 32 32 H 1.08996 * 109.47394 * 29.98497 * 1 2 3 33 33 H 1.09003 * 109.47323 * 149.98647 * 1 2 3 34 34 H 1.07999 * 120.44989 * 180.30667 * 4 3 2 35 35 H 1.08002 * 120.80485 * 179.72100 * 5 4 3 36 36 H 1.09000 * 109.47078 * 245.00246 * 7 6 5 37 37 H 1.09000 * 109.46818 * 4.99821 * 7 6 5 38 38 H 1.09000 * 109.47223 * 300.00158 * 8 7 6 39 39 H 1.09000 * 109.47298 * 60.00116 * 8 7 6 40 40 H 0.97000 * 120.00601 * 359.97438 * 11 9 8 41 41 H 1.08999 * 113.57684 * 204.34139 * 14 12 11 42 42 H 1.09006 * 113.57837 * 335.13483 * 14 12 11 43 43 H 0.97007 * 119.99971 * 287.77139 * 17 15 14 44 44 H 0.97003 * 120.00555 * 180.02562 * 21 20 18 45 45 H 1.09001 * 113.65738 * 215.29124 * 27 26 15 46 46 H 1.08997 * 113.66591 * 346.34647 * 27 26 15 47 47 H 1.09001 * 113.57837 * 270.12552 * 28 27 26 48 48 H 1.09006 * 113.65122 * 139.34818 * 28 27 26 49 49 H 1.09000 * 113.66627 * 13.65635 * 29 26 15 50 50 H 1.09000 * 113.66148 * 144.61405 * 29 26 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1485 1.1514 0.0000 4 6 3.4710 1.1906 0.0055 5 6 4.1809 -0.0001 -0.0008 6 6 3.4713 -1.1904 -0.0007 7 6 4.1961 -2.5116 -0.0015 8 6 3.7168 -3.3571 1.1802 9 6 4.4421 -4.6781 1.1797 10 8 5.2614 -4.9197 0.3186 11 7 4.1796 -5.5913 2.1354 12 6 4.8843 -6.8757 2.1346 13 1 5.2611 -7.1519 1.1498 14 6 5.9291 -7.0080 3.2575 15 6 4.8045 -7.5849 4.1363 16 1 4.2578 -6.8287 4.6996 17 7 5.2251 -8.7183 4.9639 18 6 5.3707 -8.5618 6.3164 19 1 5.1752 -7.6029 6.7732 20 6 5.7697 -9.6355 7.1005 21 7 5.9102 -9.4849 8.4004 22 14 6.1073 -11.2943 6.3105 23 1 7.5364 -11.3724 5.9145 24 1 5.8029 -12.3760 7.2813 25 1 5.2510 -11.4533 5.1077 26 6 4.1164 -7.9974 2.8347 27 6 4.1837 -9.4382 2.3269 28 6 2.7638 -9.6132 2.8954 29 6 2.5931 -8.0910 2.7408 30 7 2.1484 -1.1513 -0.0005 31 1 -0.3634 -0.0004 1.0277 32 1 -0.3634 0.8901 -0.5136 33 1 -0.3634 -0.8899 -0.5140 34 1 3.9905 2.1374 0.0104 35 1 5.2609 -0.0002 -0.0011 36 1 3.9895 -3.0388 -0.9329 37 1 5.2684 -2.3377 0.0874 38 1 3.9233 -2.8299 2.1116 39 1 2.6444 -3.5309 1.0913 40 1 3.5241 -5.3982 2.8238 41 1 6.7199 -7.7245 3.0351 42 1 6.3119 -6.0508 3.6120 43 1 5.4004 -9.5797 4.5537 44 1 6.1894 -10.2352 8.9483 45 1 4.2330 -9.5174 1.2409 46 1 4.9350 -10.0454 2.8319 47 1 2.7475 -9.9508 3.9316 48 1 2.1033 -10.1937 2.2511 49 1 2.0736 -7.6220 3.5764 50 1 2.1952 -7.7901 1.7717 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001203222592.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:09:06 Heat of formation + Delta-G solvation = 39.382884 kcal Electronic energy + Delta-G solvation = -29432.450151 eV Core-core repulsion = 25460.341281 eV Total energy + Delta-G solvation = -3972.108869 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -42.10675 -41.92436 -40.19381 -36.46954 -36.13784 -35.77212 -34.34521 -33.90081 -32.71843 -31.95363 -29.43764 -27.35072 -26.73937 -26.16011 -25.50563 -24.22855 -23.50903 -22.78465 -21.78352 -21.12184 -20.22034 -18.82505 -18.53912 -18.20916 -17.22522 -17.06513 -16.64114 -16.56283 -16.45459 -16.21623 -16.06242 -15.84321 -15.33121 -14.78141 -14.70923 -14.34019 -14.14977 -14.09630 -13.79700 -13.69569 -13.50625 -13.40236 -13.21506 -13.18245 -13.04019 -12.95075 -12.80518 -12.50642 -12.27780 -12.15657 -11.91663 -11.85509 -11.79739 -11.53109 -11.35486 -11.26217 -10.93013 -10.84451 -10.73404 -10.32636 -10.21014 -9.89467 -9.25708 -8.02587 -5.34476 -0.07025 0.09241 1.35763 1.38305 1.45364 1.65460 2.13592 2.46969 2.74541 2.94206 3.17132 3.27230 3.45062 3.46239 3.56609 3.73395 3.76785 3.87537 3.90975 4.01739 4.08951 4.13256 4.15122 4.19908 4.25105 4.49730 4.55343 4.58937 4.63477 4.66149 4.72120 4.73218 4.84361 4.86108 4.88367 4.98397 5.02068 5.06381 5.09033 5.09962 5.11437 5.14353 5.23700 5.50942 5.51984 5.60028 5.66060 5.78422 6.07237 6.22711 6.59856 7.08008 7.13253 7.27884 7.85433 8.04109 9.18839 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.017974 B = 0.002022 C = 0.001984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1557.468529 B =13845.094839 C =14106.843945 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C 0.301 3.699 3 N -0.547 5.547 4 C 0.147 3.853 5 C -0.230 4.230 6 C 0.170 3.830 7 C -0.049 4.049 8 C -0.121 4.121 9 C 0.518 3.482 10 O -0.581 6.581 11 N -0.697 5.697 12 C 0.150 3.850 13 H 0.094 0.906 14 C -0.173 4.173 15 C 0.181 3.819 16 H 0.080 0.920 17 N -0.736 5.736 18 C -0.226 4.226 19 H 0.059 0.941 20 C -0.063 4.063 21 N -0.983 5.983 22 Si 0.945 3.055 23 H -0.282 1.282 24 H -0.297 1.297 25 H -0.249 1.249 26 C -0.116 4.116 27 C -0.114 4.114 28 C -0.136 4.136 29 C -0.110 4.110 30 N -0.534 5.534 31 H 0.095 0.905 32 H 0.092 0.908 33 H 0.090 0.910 34 H 0.199 0.801 35 H 0.174 0.826 36 H 0.087 0.913 37 H 0.098 0.902 38 H 0.107 0.893 39 H 0.114 0.886 40 H 0.412 0.588 41 H 0.075 0.925 42 H 0.058 0.942 43 H 0.367 0.633 44 H 0.256 0.744 45 H 0.102 0.898 46 H 0.050 0.950 47 H 0.059 0.941 48 H 0.083 0.917 49 H 0.068 0.932 50 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.591 17.752 -21.365 29.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.034 3.966 3 N -0.262 5.262 4 C -0.018 4.018 5 C -0.251 4.251 6 C 0.024 3.976 7 C -0.087 4.087 8 C -0.161 4.161 9 C 0.306 3.694 10 O -0.461 6.461 11 N -0.347 5.347 12 C 0.043 3.957 13 H 0.112 0.888 14 C -0.215 4.215 15 C 0.072 3.928 16 H 0.098 0.902 17 N -0.377 5.377 18 C -0.357 4.357 19 H 0.077 0.923 20 C -0.255 4.255 21 N -0.633 5.633 22 Si 0.773 3.227 23 H -0.209 1.209 24 H -0.224 1.224 25 H -0.174 1.174 26 C -0.118 4.118 27 C -0.152 4.152 28 C -0.173 4.173 29 C -0.148 4.148 30 N -0.250 5.250 31 H 0.113 0.887 32 H 0.110 0.890 33 H 0.109 0.891 34 H 0.216 0.784 35 H 0.191 0.809 36 H 0.105 0.895 37 H 0.116 0.884 38 H 0.125 0.875 39 H 0.132 0.868 40 H 0.249 0.751 41 H 0.094 0.906 42 H 0.076 0.924 43 H 0.202 0.798 44 H 0.065 0.935 45 H 0.121 0.879 46 H 0.069 0.931 47 H 0.078 0.922 48 H 0.101 0.899 49 H 0.086 0.914 50 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -10.024 17.674 -21.750 29.764 hybrid contribution 1.395 -1.097 0.729 1.919 sum -8.629 16.577 -21.021 28.127 Atomic orbital electron populations 1.20647 0.84153 1.04731 1.04676 1.23795 0.99417 0.83315 0.90064 1.68322 1.11376 1.30709 1.15842 1.23822 0.89246 1.00116 0.88586 1.23091 1.04385 0.93455 1.04186 1.21888 0.89627 0.96495 0.89588 1.20275 0.99600 0.89549 0.99321 1.21496 1.02283 0.91539 1.00794 1.21036 0.81934 0.86243 0.80158 1.90687 1.36465 1.80051 1.38881 1.45556 1.43169 1.15522 1.30471 1.21362 0.92909 0.83249 0.98182 0.88834 1.24129 0.98532 1.00905 0.97940 1.21560 0.93520 0.89385 0.88352 0.90204 1.42716 1.81558 1.09806 1.03643 1.19076 1.36430 0.96582 0.83619 0.92254 1.25436 1.02672 1.01628 0.95729 1.69866 1.55913 1.32179 1.05381 0.85561 0.78467 0.80388 0.78318 1.20865 1.22372 1.17390 1.23374 0.96770 0.95302 0.96397 1.22580 0.97701 0.93786 1.01127 1.22725 0.96591 0.97315 1.00715 1.22607 0.93630 0.96070 1.02472 1.68093 1.10155 1.30964 1.15740 0.88686 0.88969 0.89108 0.78417 0.80899 0.89487 0.88384 0.87497 0.86797 0.75145 0.90600 0.92354 0.79847 0.93471 0.87919 0.93079 0.92192 0.89881 0.91364 0.88315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.98 10.32 71.23 0.74 -0.24 16 2 C 0.30 5.35 7.64 138.75 1.06 6.41 16 3 N -0.55 -9.68 10.33 -187.84 -1.94 -11.62 16 4 C 0.15 1.89 11.31 84.71 0.96 2.85 16 5 C -0.23 -2.86 9.80 22.44 0.22 -2.64 16 6 C 0.17 2.76 6.20 42.56 0.26 3.02 16 7 C -0.05 -0.77 4.94 29.85 0.15 -0.62 16 8 C -0.12 -1.87 5.57 29.85 0.17 -1.70 16 9 C 0.52 11.42 7.83 87.66 0.69 12.11 16 10 O -0.58 -17.16 15.58 -3.04 -0.05 -17.20 16 11 N -0.70 -14.91 5.05 -441.15 -2.23 -17.14 16 12 C 0.15 3.93 4.12 45.28 0.19 4.11 16 13 H 0.09 2.63 7.46 -2.39 -0.02 2.61 16 14 C -0.17 -5.57 7.69 31.23 0.24 -5.33 16 15 C 0.18 6.35 4.27 45.28 0.19 6.54 16 16 H 0.08 2.84 8.10 -2.39 -0.02 2.82 16 17 N -0.74 -32.77 5.13 -321.57 -1.65 -34.42 16 18 C -0.23 -12.49 10.45 84.03 0.88 -11.61 16 19 H 0.06 3.58 8.06 -2.91 -0.02 3.56 16 20 C -0.06 -3.68 5.50 84.86 0.47 -3.21 16 21 N -0.98 -62.44 13.97 21.65 0.30 -62.14 16 22 Si 0.94 45.08 27.74 68.60 1.90 46.98 16 23 H -0.28 -13.31 7.11 99.48 0.71 -12.60 16 24 H -0.30 -14.41 7.11 99.48 0.71 -13.70 16 25 H -0.25 -10.66 6.52 99.48 0.65 -10.01 16 26 C -0.12 -3.15 0.92 -52.31 -0.05 -3.19 16 27 C -0.11 -3.03 7.47 30.89 0.23 -2.80 16 28 C -0.14 -3.49 8.08 31.23 0.25 -3.23 16 29 C -0.11 -2.52 7.49 30.88 0.23 -2.29 16 30 N -0.53 -9.96 9.94 -176.03 -1.75 -11.71 16 31 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 32 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 33 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 34 H 0.20 1.09 8.06 -2.91 -0.02 1.07 16 35 H 0.17 1.18 8.01 -2.91 -0.02 1.16 16 36 H 0.09 1.55 8.10 -2.39 -0.02 1.53 16 37 H 0.10 1.43 7.90 -2.39 -0.02 1.41 16 38 H 0.11 1.39 8.14 -2.39 -0.02 1.37 16 39 H 0.11 1.61 7.98 -2.39 -0.02 1.59 16 40 H 0.41 7.23 8.62 -92.71 -0.80 6.43 16 41 H 0.08 2.58 8.14 -2.39 -0.02 2.56 16 42 H 0.06 1.90 8.14 -2.38 -0.02 1.89 16 43 H 0.37 15.93 3.78 -92.70 -0.35 15.58 16 44 H 0.26 15.61 8.31 -92.71 -0.77 14.84 16 45 H 0.10 2.26 8.14 -2.39 -0.02 2.24 16 46 H 0.05 1.57 6.42 -2.39 -0.02 1.55 16 47 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 48 H 0.08 1.75 8.14 -2.38 -0.02 1.73 16 49 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 50 H 0.10 1.87 8.14 -2.39 -0.02 1.85 16 Total: -1.00 -74.70 408.43 1.21 -73.49 By element: Atomic # 1 Polarization: 35.85 SS G_CDS: -0.25 Total: 35.59 kcal Atomic # 6 Polarization: -8.70 SS G_CDS: 6.87 Total: -1.83 kcal Atomic # 7 Polarization: -129.77 SS G_CDS: -7.26 Total: -137.04 kcal Atomic # 8 Polarization: -17.16 SS G_CDS: -0.05 Total: -17.20 kcal Atomic # 14 Polarization: 45.08 SS G_CDS: 1.90 Total: 46.98 kcal Total: -74.70 1.21 -73.49 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001203222592.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.876 kcal (2) G-P(sol) polarization free energy of solvation -74.701 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.175 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.208 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.493 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.383 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds