Wall clock time and date at job start Wed Apr 1 2020 03:09:14
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50696 * 1
3 3 N 1.31807 * 119.12314 * 2 1
4 4 C 1.32326 * 120.81708 * 180.02562 * 3 2 1
5 5 C 1.38619 * 119.10285 * 359.97438 * 4 3 2
6 6 C 1.38574 * 118.40081 * 0.28010 * 5 4 3
7 7 C 1.50693 * 120.45007 * 179.72235 * 6 5 4
8 8 C 1.53008 * 109.47327 * 124.99410 * 7 6 5
9 9 C 1.50698 * 109.47139 * 180.02562 * 8 7 6
10 10 O 1.21279 * 120.00072 * 359.97438 * 9 8 7
11 11 N 1.34778 * 120.00023 * 180.02562 * 9 8 7
12 12 C 1.46489 * 120.00331 * 179.97438 * 11 9 8
13 13 H 1.09008 * 112.88613 * 25.33452 * 12 11 9
14 14 C 1.53955 * 113.66736 * 253.99031 * 12 11 9
15 15 C 1.53955 * 87.29052 * 270.26124 * 14 12 11
16 16 H 1.09000 * 113.65846 * 220.78769 * 15 14 12
17 17 N 1.46500 * 113.66428 * 89.82869 * 15 14 12
18 18 C 1.36939 * 120.00414 * 104.50293 * 17 15 14
19 19 H 1.08003 * 119.99441 * 359.97438 * 18 17 15
20 20 C 1.38809 * 120.00207 * 180.02562 * 18 17 15
21 21 N 1.31620 * 119.99809 * 359.97438 * 20 18 17
22 22 Si 1.86797 * 119.99854 * 179.97438 * 20 18 17
23 23 H 1.48500 * 109.47282 * 60.00284 * 22 20 18
24 24 H 1.48504 * 109.46800 * 179.97438 * 22 20 18
25 25 H 1.48490 * 109.47337 * 299.99739 * 22 20 18
26 26 C 1.52910 * 113.66777 * 156.67674 * 12 11 9
27 27 C 1.52910 * 121.13658 * 323.85384 * 26 12 11
28 28 C 1.53958 * 86.78190 * 209.37057 * 27 26 12
29 29 C 1.52909 * 121.14139 * 215.28954 * 26 12 11
30 30 N 1.31778 * 119.12326 * 180.02562 * 2 1 3
31 31 H 1.08999 * 109.46887 * 90.00751 * 1 2 3
32 32 H 1.09003 * 109.47534 * 210.00418 * 1 2 3
33 33 H 1.08997 * 109.47627 * 330.00915 * 1 2 3
34 34 H 1.08001 * 120.44465 * 179.97438 * 4 3 2
35 35 H 1.08002 * 120.79619 * 179.97438 * 5 4 3
36 36 H 1.08999 * 109.47232 * 244.99804 * 7 6 5
37 37 H 1.09008 * 109.47261 * 5.00107 * 7 6 5
38 38 H 1.08999 * 109.47287 * 300.00361 * 8 7 6
39 39 H 1.08998 * 109.46395 * 60.00263 * 8 7 6
40 40 H 0.97011 * 119.99395 * 359.97438 * 11 9 8
41 41 H 1.08997 * 113.57492 * 24.85906 * 14 12 11
42 42 H 1.08994 * 113.58291 * 155.65994 * 14 12 11
43 43 H 0.97003 * 119.99460 * 284.50358 * 17 15 14
44 44 H 0.96999 * 119.99547 * 179.97438 * 21 20 18
45 45 H 1.08992 * 113.66722 * 323.84685 * 27 26 12
46 46 H 1.09003 * 113.65912 * 94.90141 * 27 26 12
47 47 H 1.08993 * 113.58312 * 270.13463 * 28 27 26
48 48 H 1.09004 * 113.57496 * 139.33602 * 28 27 26
49 49 H 1.08997 * 113.66010 * 265.09234 * 29 26 12
50 50 H 1.09003 * 113.66035 * 36.15289 * 29 26 12
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 7 2.1484 1.1514 0.0000
4 6 3.4711 1.1906 -0.0005
5 6 4.1808 -0.0002 -0.0005
6 6 3.4712 -1.1904 -0.0059
7 6 4.1960 -2.5116 -0.0125
8 6 3.7164 -3.3623 1.1654
9 6 4.4417 -4.6833 1.1592
10 8 5.2611 -4.9211 0.2974
11 7 4.1790 -5.6008 2.1109
12 6 4.8836 -6.8851 2.1046
13 1 5.8525 -6.8346 1.6077
14 6 4.0118 -8.0660 1.6401
15 6 3.6090 -8.2535 3.1141
16 1 3.5602 -9.2972 3.4248
17 7 2.4216 -7.4878 3.5012
18 6 1.2195 -8.1234 3.6630
19 1 1.1468 -9.1893 3.5048
20 6 0.0943 -7.3977 4.0293
21 7 0.1830 -6.0987 4.2216
22 14 -1.5455 -8.2648 4.2492
23 1 -1.4220 -9.2954 5.3112
24 1 -2.5807 -7.2742 4.6395
25 1 -1.9373 -8.9141 2.9726
26 6 4.9304 -7.5662 3.4728
27 6 5.0767 -6.7502 4.7577
28 6 5.7892 -7.9781 5.3535
29 6 6.1505 -8.3771 3.9111
30 7 2.1483 -1.1512 -0.0005
31 1 -0.3633 -0.0001 -1.0277
32 1 -0.3634 -0.8899 0.5139
33 1 -0.3634 0.8900 0.5137
34 1 3.9906 2.1374 -0.0009
35 1 5.2609 -0.0002 -0.0013
36 1 3.9897 -3.0346 -0.9462
37 1 5.2684 -2.3382 0.0776
38 1 3.9228 -2.8393 2.0992
39 1 2.6441 -3.5357 1.0754
40 1 3.5233 -5.4106 2.8001
41 1 3.1838 -7.7697 0.9962
42 1 4.5861 -8.8994 1.2356
43 1 2.4869 -6.5304 3.6429
44 1 -0.6034 -5.5915 4.4771
45 1 5.7223 -5.8786 4.6513
46 1 4.1267 -6.5191 5.2396
47 1 5.1137 -8.6790 5.8437
48 1 6.6549 -7.7252 5.9657
49 1 6.0583 -9.4457 3.7168
50 1 7.0979 -7.9626 3.5668
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001203222609.mol2 50
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 03:09:14
Heat of formation + Delta-G solvation = 41.298396 kcal
Electronic energy + Delta-G solvation = -30160.736825 eV
Core-core repulsion = 26188.711019 eV
Total energy + Delta-G solvation = -3972.025807 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 344.195 amu
Computer time = 0.98 seconds
Orbital eigenvalues (eV)
-42.11952 -41.90135 -40.13948 -36.67852 -36.11758 -35.36282 -34.36622 -33.82142
-32.51913 -31.61138 -29.47960 -27.32748 -26.76873 -26.01155 -25.45233 -24.40835
-23.80298 -22.74121 -21.65195 -21.18891 -19.68178 -18.75618 -18.57488 -18.16945
-17.12654 -16.94300 -16.70356 -16.63612 -16.23313 -16.16219 -16.10324 -15.81844
-15.42953 -14.88489 -14.67594 -14.56806 -14.17282 -13.89815 -13.61893 -13.58369
-13.40272 -13.28224 -13.23349 -13.09764 -13.05006 -12.79878 -12.66845 -12.53370
-12.33118 -12.21361 -11.92934 -11.82514 -11.80161 -11.56610 -11.28135 -11.16782
-10.89951 -10.78588 -10.63527 -10.33353 -10.21328 -9.83770 -8.98821 -7.95127
-5.21962 -0.09378 0.09799 1.48316 1.49561 1.55340 1.61110 2.15970
2.55824 2.73182 2.93175 3.14662 3.37715 3.40148 3.47876 3.70810
3.74969 3.82885 3.96122 4.02130 4.03454 4.09309 4.13618 4.21431
4.23409 4.29590 4.46941 4.53108 4.59903 4.62470 4.67240 4.67551
4.81712 4.83154 4.88420 4.92959 4.94348 5.00829 5.05747 5.06580
5.13501 5.14467 5.22908 5.26979 5.48956 5.52598 5.60670 5.62937
5.72599 6.07451 6.28053 6.55515 7.12959 7.21426 7.35328 8.08599
8.32691 9.27386
Molecular weight = 344.20amu
Principal moments of inertia in cm(-1)
A = 0.008423 B = 0.003285 C = 0.002540
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 3323.369094 B = 8521.832864 C =11022.691728
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.085 4.085
2 C 0.301 3.699
3 N -0.542 5.542
4 C 0.148 3.852
5 C -0.224 4.224
6 C 0.165 3.835
7 C -0.044 4.044
8 C -0.125 4.125
9 C 0.518 3.482
10 O -0.577 6.577
11 N -0.699 5.699
12 C 0.140 3.860
13 H 0.096 0.904
14 C -0.180 4.180
15 C 0.176 3.824
16 H 0.061 0.939
17 N -0.708 5.708
18 C -0.244 4.244
19 H 0.073 0.927
20 C -0.063 4.063
21 N -0.961 5.961
22 Si 0.966 3.034
23 H -0.279 1.279
24 H -0.296 1.296
25 H -0.283 1.283
26 C -0.118 4.118
27 C -0.127 4.127
28 C -0.128 4.128
29 C -0.093 4.093
30 N -0.544 5.544
31 H 0.096 0.904
32 H 0.080 0.920
33 H 0.096 0.904
34 H 0.207 0.793
35 H 0.181 0.819
36 H 0.082 0.918
37 H 0.110 0.890
38 H 0.105 0.895
39 H 0.090 0.910
40 H 0.402 0.598
41 H 0.040 0.960
42 H 0.101 0.899
43 H 0.375 0.625
44 H 0.251 0.749
45 H 0.086 0.914
46 H 0.046 0.954
47 H 0.069 0.931
48 H 0.084 0.916
49 H 0.079 0.921
50 H 0.101 0.899
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 12.609 9.927 -4.828 16.758
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.144 4.144
2 C 0.034 3.966
3 N -0.258 5.258
4 C -0.017 4.017
5 C -0.245 4.245
6 C 0.020 3.980
7 C -0.082 4.082
8 C -0.165 4.165
9 C 0.306 3.694
10 O -0.458 6.458
11 N -0.349 5.349
12 C 0.034 3.966
13 H 0.114 0.886
14 C -0.222 4.222
15 C 0.066 3.934
16 H 0.079 0.921
17 N -0.348 5.348
18 C -0.376 4.376
19 H 0.091 0.909
20 C -0.256 4.256
21 N -0.611 5.611
22 Si 0.796 3.204
23 H -0.205 1.205
24 H -0.223 1.223
25 H -0.210 1.210
26 C -0.121 4.121
27 C -0.165 4.165
28 C -0.165 4.165
29 C -0.131 4.131
30 N -0.260 5.260
31 H 0.114 0.886
32 H 0.098 0.902
33 H 0.114 0.886
34 H 0.223 0.777
35 H 0.199 0.801
36 H 0.100 0.900
37 H 0.128 0.872
38 H 0.123 0.877
39 H 0.108 0.892
40 H 0.239 0.761
41 H 0.058 0.942
42 H 0.119 0.881
43 H 0.209 0.791
44 H 0.060 0.940
45 H 0.104 0.896
46 H 0.065 0.935
47 H 0.088 0.912
48 H 0.103 0.897
49 H 0.098 0.902
50 H 0.119 0.881
Dipole moment (debyes) X Y Z Total
from point charges 12.017 9.628 -5.391 16.315
hybrid contribution -0.920 -0.046 0.385 0.998
sum 11.097 9.581 -5.007 15.492
Atomic orbital electron populations
1.20633 0.84652 1.04501 1.04572 1.23680 0.99249 0.83371 0.90318
1.68321 1.11571 1.30168 1.15718 1.23921 0.89087 1.00222 0.88492
1.23102 1.04535 0.93017 1.03853 1.21915 0.89460 0.96751 0.89865
1.20265 0.99967 0.89427 0.98560 1.21474 1.01424 0.92387 1.01215
1.20880 0.81928 0.86189 0.80379 1.90625 1.36594 1.80751 1.37853
1.45843 1.42770 1.15861 1.30428 1.21636 0.95368 0.82224 0.97329
0.88645 1.24206 0.99401 0.98882 0.99674 1.21129 0.85259 0.94595
0.92458 0.92126 1.42154 1.04250 1.07107 1.81279 1.19540 0.87274
0.92889 1.37891 0.90902 1.25379 1.00897 0.96321 1.03040 1.69741
1.29668 1.06408 1.55281 0.85332 0.80068 0.77213 0.77831 1.20546
1.22256 1.20992 1.23446 0.97445 0.98441 0.92730 1.22574 1.00238
0.97668 0.96026 1.22714 1.00222 0.97081 0.96492 1.22546 0.95518
0.99869 0.95153 1.68105 1.10797 1.31427 1.15660 0.88585 0.90152
0.88557 0.77685 0.80134 0.89967 0.87214 0.87699 0.89156 0.76097
0.94155 0.88060 0.79087 0.93978 0.89583 0.93491 0.91239 0.89733
0.90236 0.88060
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.09 -1.80 10.32 71.23 0.74 -1.06 16
2 C 0.30 7.86 7.64 138.75 1.06 8.92 16
3 N -0.54 -12.77 10.33 -187.84 -1.94 -14.71 16
4 C 0.15 2.56 11.31 84.71 0.96 3.52 16
5 C -0.22 -3.89 9.80 22.44 0.22 -3.67 16
6 C 0.17 3.98 6.21 42.56 0.26 4.25 16
7 C -0.04 -1.06 4.94 29.85 0.15 -0.91 16
8 C -0.12 -3.49 5.57 29.85 0.17 -3.33 16
9 C 0.52 17.10 7.83 87.66 0.69 17.79 16
10 O -0.58 -21.25 15.60 -3.03 -0.05 -21.29 16
11 N -0.70 -23.83 4.93 -441.16 -2.17 -26.00 16
12 C 0.14 4.54 4.09 45.29 0.19 4.73 16
13 H 0.10 3.02 7.50 -2.38 -0.02 3.01 16
14 C -0.18 -6.35 7.68 31.24 0.24 -6.11 16
15 C 0.18 6.67 4.36 45.38 0.20 6.87 16
16 H 0.06 2.31 8.12 -2.39 -0.02 2.29 16
17 N -0.71 -33.42 4.78 -321.08 -1.53 -34.96 16
18 C -0.24 -13.05 9.98 84.03 0.84 -12.21 16
19 H 0.07 3.79 7.83 -2.91 -0.02 3.77 16
20 C -0.06 -3.49 5.50 84.86 0.47 -3.03 16
21 N -0.96 -55.76 13.06 21.65 0.28 -55.48 16
22 Si 0.97 45.21 29.55 68.60 2.03 47.24 16
23 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16
24 H -0.30 -14.03 7.11 99.48 0.71 -13.32 16
25 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16
26 C -0.12 -3.57 0.78 -52.21 -0.04 -3.61 16
27 C -0.13 -3.76 7.22 30.89 0.22 -3.53 16
28 C -0.13 -3.11 8.08 31.23 0.25 -2.86 16
29 C -0.09 -2.13 7.84 30.89 0.24 -1.89 16
30 N -0.54 -15.59 9.93 -176.04 -1.75 -17.33 16
31 H 0.10 1.74 8.14 -2.39 -0.02 1.72 16
32 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16
33 H 0.10 1.73 8.14 -2.39 -0.02 1.71 16
34 H 0.21 1.75 8.06 -2.91 -0.02 1.72 16
35 H 0.18 1.81 8.01 -2.91 -0.02 1.78 16
36 H 0.08 2.20 8.10 -2.39 -0.02 2.18 16
37 H 0.11 2.19 7.90 -2.38 -0.02 2.17 16
38 H 0.10 2.60 8.14 -2.39 -0.02 2.58 16
39 H 0.09 2.92 7.98 -2.39 -0.02 2.90 16
40 H 0.40 14.87 6.20 -92.70 -0.57 14.29 16
41 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16
42 H 0.10 3.02 8.14 -2.39 -0.02 3.00 16
43 H 0.37 18.35 5.12 -92.71 -0.47 17.87 16
44 H 0.25 14.35 8.31 -92.71 -0.77 13.58 16
45 H 0.09 2.29 8.14 -2.39 -0.02 2.27 16
46 H 0.05 1.70 7.53 -2.39 -0.02 1.68 16
47 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16
48 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16
49 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16
50 H 0.10 1.95 8.14 -2.39 -0.02 1.93 16
Total: -1.00 -68.77 408.86 1.61 -67.16
By element:
Atomic # 1 Polarization: 51.62 SS G_CDS: -0.10 Total: 51.52 kcal
Atomic # 6 Polarization: -2.98 SS G_CDS: 6.84 Total: 3.86 kcal
Atomic # 7 Polarization: -141.37 SS G_CDS: -7.11 Total: -148.48 kcal
Atomic # 8 Polarization: -21.25 SS G_CDS: -0.05 Total: -21.29 kcal
Atomic # 14 Polarization: 45.21 SS G_CDS: 2.03 Total: 47.24 kcal
Total: -68.77 1.61 -67.16 kcal
The number of atoms in the molecule is 50
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001203222609.mol2 50
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 108.455 kcal
(2) G-P(sol) polarization free energy of solvation -68.770 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.685 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.614 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.157 kcal
(6) G-S(sol) free energy of system = (1) + (5) 41.298 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.98 seconds