Wall clock time and date at job start Wed Apr 1 2020 03:02:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.31887 * 118.95113 * 2 1 4 4 C 1.32134 * 120.96629 * 179.72297 * 3 2 1 5 5 C 1.39960 * 118.92344 * 0.52485 * 4 3 2 6 6 C 1.47837 * 120.94075 * 179.74029 * 5 4 3 7 7 O 1.21555 * 119.99988 * 222.53963 * 6 5 4 8 8 N 1.34773 * 119.99944 * 42.54526 * 6 5 4 9 9 C 1.48118 * 127.03478 * 355.33200 * 8 6 5 10 10 C 1.54943 * 103.25895 * 140.67547 * 9 8 6 11 11 H 1.08998 * 110.74057 * 279.04558 * 10 9 8 12 12 C 1.52997 * 110.74297 * 155.71460 * 10 9 8 13 13 C 1.54625 * 102.83443 * 37.37811 * 10 9 8 14 14 H 1.08997 * 110.41309 * 97.08663 * 13 10 9 15 15 C 1.53004 * 110.32501 * 219.26224 * 13 10 9 16 16 N 1.46496 * 109.46775 * 182.07502 * 15 13 10 17 17 C 1.36937 * 119.99890 * 179.71919 * 16 15 13 18 18 H 1.08001 * 119.99705 * 0.28381 * 17 16 15 19 19 C 1.38808 * 120.00386 * 180.27205 * 17 16 15 20 20 N 1.31622 * 120.00231 * 180.02562 * 19 17 16 21 21 Si 1.86808 * 119.99935 * 0.02562 * 19 17 16 22 22 H 1.48496 * 109.47203 * 89.99522 * 21 19 17 23 23 H 1.48500 * 109.46936 * 209.99757 * 21 19 17 24 24 H 1.48507 * 109.46537 * 329.99487 * 21 19 17 25 25 C 1.47487 * 127.03470 * 175.29355 * 8 6 5 26 26 C 1.39930 * 118.12296 * 359.46733 * 5 4 3 27 27 C 1.50703 * 120.54029 * 180.25172 * 26 5 4 28 28 C 1.52995 * 117.49842 * 182.33655 * 27 26 5 29 29 C 1.53004 * 117.49732 * 113.71234 * 27 26 5 30 30 N 1.31856 * 118.95734 * 179.97438 * 2 1 3 31 31 H 1.08993 * 109.47178 * 270.02174 * 1 2 3 32 32 H 1.09003 * 109.47193 * 30.02830 * 1 2 3 33 33 H 1.09004 * 109.46935 * 150.02233 * 1 2 3 34 34 H 1.08000 * 120.53474 * 180.26291 * 4 3 2 35 35 H 1.08995 * 110.66379 * 259.11903 * 9 8 6 36 36 H 1.09001 * 110.66119 * 22.06586 * 9 8 6 37 37 H 1.09005 * 109.46539 * 306.58470 * 12 10 9 38 38 H 1.08997 * 109.47211 * 66.58324 * 12 10 9 39 39 H 1.08995 * 109.47101 * 186.58380 * 12 10 9 40 40 H 1.08996 * 109.47146 * 62.07389 * 15 13 10 41 41 H 1.08998 * 109.46768 * 302.07305 * 15 13 10 42 42 H 0.97000 * 120.00341 * 359.97438 * 16 15 13 43 43 H 0.97005 * 119.99579 * 180.02562 * 20 19 17 44 44 H 1.09002 * 109.91125 * 86.11944 * 25 8 6 45 45 H 1.08999 * 109.91395 * 324.84304 * 25 8 6 46 46 H 1.09001 * 115.54805 * 328.04612 * 27 26 5 47 47 H 1.09002 * 117.50350 * 359.97438 * 28 27 26 48 48 H 1.09002 * 117.50293 * 145.02280 * 28 27 26 49 49 H 1.08999 * 117.49871 * 214.97596 * 29 27 26 50 50 H 1.08998 * 117.49642 * 359.97438 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1454 1.1541 0.0000 4 6 3.4659 1.2005 0.0055 5 6 4.1855 0.0001 0.0001 6 6 5.6639 0.0001 0.0001 7 8 6.2716 -0.7724 -0.7150 8 7 6.3377 0.8564 0.7932 9 6 5.7632 1.9210 1.6479 10 6 6.6301 1.8537 2.9304 11 1 6.2899 1.0510 3.5846 12 6 6.6164 3.1958 3.6647 13 6 8.0406 1.5473 2.3758 14 1 8.6202 2.4657 2.2826 15 6 8.7648 0.5527 3.2853 16 7 10.1153 0.3140 2.7703 17 6 10.9573 -0.5426 3.4279 18 1 10.6242 -1.0456 4.3236 19 6 12.2390 -0.7644 2.9431 20 7 13.0482 -1.5881 3.5749 21 14 12.8154 0.1060 1.3940 22 1 13.4453 1.4003 1.7588 23 1 13.8062 -0.7451 0.6875 24 1 11.6526 0.3547 0.5043 25 6 7.7980 0.9248 0.9882 26 6 3.4661 -1.2001 0.0006 27 6 4.1858 -2.5243 0.0007 28 6 3.3317 -3.7924 -0.0541 29 6 4.0439 -3.4053 1.2435 30 7 2.1454 -1.1537 0.0005 31 1 -0.3633 0.0004 1.0276 32 1 -0.3634 0.8897 -0.5143 33 1 -0.3633 -0.8902 -0.5135 34 1 3.9815 2.1495 0.0097 35 1 5.8615 2.8946 1.1679 36 1 4.7183 1.7096 1.8754 37 1 6.9037 3.9899 2.9755 38 1 5.6143 3.3909 4.0465 39 1 7.3215 3.1627 4.4953 40 1 8.2131 -0.3871 3.3079 41 1 8.8274 0.9616 4.2937 42 1 10.4144 0.7655 1.9655 43 1 13.9439 -1.7428 3.2363 44 1 8.2466 1.5508 0.2169 45 1 8.2248 -0.0775 0.9512 46 1 5.1432 -2.5389 -0.5201 47 1 2.2492 -3.6692 -0.0898 48 1 3.7270 -4.6419 -0.6111 49 1 4.9079 -4.0000 1.5401 50 1 3.4305 -3.0270 2.0612 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001271701389.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:02:07 Heat of formation + Delta-G solvation = 56.532621 kcal Electronic energy + Delta-G solvation = -30608.459685 eV Core-core repulsion = 26637.094484 eV Total energy + Delta-G solvation = -3971.365201 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.76179 -40.02860 -38.16499 -37.39234 -34.94355 -33.98777 -33.37647 -32.84642 -31.59343 -29.92111 -28.97577 -26.64076 -26.18168 -25.45454 -23.95755 -22.90863 -22.48069 -21.35286 -21.17660 -20.32067 -19.71203 -18.21912 -17.76572 -17.20578 -16.70338 -16.48580 -15.69371 -15.52771 -15.37352 -14.77625 -14.55427 -14.26438 -14.10951 -13.98216 -13.72927 -13.28323 -13.06692 -13.00608 -12.92365 -12.81215 -12.70582 -12.26288 -12.26185 -12.00188 -11.90135 -11.75052 -11.62222 -11.53750 -11.48179 -11.01792 -10.77557 -10.71515 -10.65253 -10.44354 -10.33954 -10.12317 -9.94222 -9.63537 -9.59679 -9.55514 -8.92919 -8.79145 -7.25837 -5.77679 -3.13883 0.18497 0.63246 2.45834 2.72872 3.20744 3.37425 3.39793 3.42544 3.45671 3.60167 3.73396 3.95971 4.11836 4.34720 4.55093 4.57558 4.59070 4.66948 4.73569 4.79270 4.82906 4.92487 5.11152 5.11383 5.13139 5.15617 5.26213 5.35769 5.44001 5.48749 5.50956 5.51623 5.55049 5.59544 5.68803 5.73900 5.78965 5.92797 5.95695 5.96628 6.02411 6.04265 6.06560 6.17074 6.27415 6.55443 6.57690 6.69846 7.34316 7.66461 7.93930 7.97418 8.40858 9.19373 9.91649 10.10539 11.40645 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.013320 B = 0.002994 C = 0.002682 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2101.525183 B = 9350.098575 C =10436.293316 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C 0.335 3.665 3 N -0.525 5.525 4 C 0.184 3.816 5 C -0.234 4.234 6 C 0.589 3.411 7 O -0.522 6.522 8 N -0.610 5.610 9 C 0.095 3.905 10 C -0.097 4.097 11 H 0.087 0.913 12 C -0.141 4.141 13 C -0.107 4.107 14 H 0.089 0.911 15 C 0.167 3.833 16 N -0.756 5.756 17 C -0.245 4.245 18 H 0.090 0.910 19 C 0.005 3.995 20 N -0.934 5.934 21 Si 0.883 3.117 22 H -0.284 1.284 23 H -0.290 1.290 24 H -0.276 1.276 25 C 0.110 3.890 26 C 0.268 3.732 27 C -0.140 4.140 28 C -0.152 4.152 29 C -0.152 4.152 30 N -0.518 5.518 31 H 0.089 0.911 32 H 0.088 0.912 33 H 0.088 0.912 34 H 0.174 0.826 35 H 0.080 0.920 36 H 0.077 0.923 37 H 0.058 0.942 38 H 0.056 0.944 39 H 0.066 0.934 40 H 0.028 0.972 41 H 0.031 0.969 42 H 0.361 0.639 43 H 0.260 0.740 44 H 0.066 0.934 45 H 0.093 0.907 46 H 0.149 0.851 47 H 0.108 0.892 48 H 0.100 0.900 49 H 0.107 0.893 50 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.484 7.143 -5.711 28.019 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.068 3.932 3 N -0.240 5.240 4 C 0.017 3.983 5 C -0.242 4.242 6 C 0.376 3.624 7 O -0.398 6.398 8 N -0.343 5.343 9 C -0.028 4.028 10 C -0.117 4.117 11 H 0.105 0.895 12 C -0.198 4.198 13 C -0.127 4.127 14 H 0.107 0.893 15 C 0.040 3.960 16 N -0.401 5.401 17 C -0.375 4.375 18 H 0.107 0.893 19 C -0.190 4.190 20 N -0.581 5.581 21 Si 0.713 3.287 22 H -0.211 1.211 23 H -0.217 1.217 24 H -0.202 1.202 25 C -0.012 4.012 26 C 0.121 3.879 27 C -0.159 4.159 28 C -0.189 4.189 29 C -0.190 4.190 30 N -0.233 5.233 31 H 0.108 0.892 32 H 0.107 0.893 33 H 0.106 0.894 34 H 0.191 0.809 35 H 0.098 0.902 36 H 0.095 0.905 37 H 0.077 0.923 38 H 0.075 0.925 39 H 0.085 0.915 40 H 0.045 0.955 41 H 0.049 0.951 42 H 0.193 0.807 43 H 0.070 0.930 44 H 0.085 0.915 45 H 0.111 0.889 46 H 0.166 0.834 47 H 0.126 0.874 48 H 0.119 0.881 49 H 0.125 0.875 50 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -27.126 6.494 -6.010 28.532 hybrid contribution 1.618 0.777 -1.079 2.094 sum -25.507 7.271 -7.088 27.454 Atomic orbital electron populations 1.20627 0.85248 1.04466 1.04172 1.23477 0.98410 0.83222 0.88042 1.68302 1.09455 1.30080 1.16143 1.23531 0.89534 0.97585 0.87628 1.21426 0.95940 0.96235 1.10550 1.17296 0.85429 0.79971 0.79738 1.90786 1.69103 1.39617 1.40325 1.48681 1.08749 1.33206 1.43701 1.22884 0.98089 0.90856 0.91001 1.22269 0.94679 0.99206 0.95549 0.89478 1.21741 1.02011 0.95401 1.00675 1.22470 0.95764 1.00184 0.94271 0.89316 1.20671 0.85772 0.94825 0.94717 1.42716 1.11612 1.54859 1.30963 1.19025 0.93207 1.17773 1.07454 0.89255 1.24671 0.96461 0.99324 0.98584 1.69704 1.07911 1.39452 1.41065 0.86565 0.78414 0.79423 0.84262 1.21073 1.21683 1.20219 1.22261 0.78801 1.03491 0.96619 1.20860 0.88373 0.93527 0.85109 1.21415 1.01924 0.86613 1.05950 1.22965 0.99644 0.96213 1.00087 1.22984 1.03363 1.01452 0.91180 1.68087 1.08885 1.30099 1.16217 0.89228 0.89321 0.89352 0.80913 0.90229 0.90496 0.92326 0.92532 0.91499 0.95455 0.95067 0.80665 0.93036 0.91528 0.88890 0.83388 0.87402 0.88113 0.87502 0.88757 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.55 10.31 36.00 0.37 -0.18 16 2 C 0.33 3.46 7.64 -157.06 -1.20 2.26 16 3 N -0.53 -5.60 10.32 -10.39 -0.11 -5.71 16 4 C 0.18 1.91 9.07 -16.78 -0.15 1.76 16 5 C -0.23 -2.93 5.43 -104.69 -0.57 -3.50 16 6 C 0.59 8.58 7.17 -12.33 -0.09 8.49 16 7 O -0.52 -9.38 15.10 5.32 0.08 -9.30 16 8 N -0.61 -7.94 3.29 -170.87 -0.56 -8.50 16 9 C 0.09 0.89 4.98 -2.13 -0.01 0.88 16 10 C -0.10 -1.01 3.21 -88.74 -0.28 -1.30 16 11 H 0.09 0.97 7.86 -51.93 -0.41 0.56 16 12 C -0.14 -1.18 9.16 37.16 0.34 -0.84 16 13 C -0.11 -1.47 2.65 -89.24 -0.24 -1.71 16 14 H 0.09 1.16 7.85 -51.93 -0.41 0.75 16 15 C 0.17 3.06 5.34 -4.04 -0.02 3.04 16 16 N -0.76 -17.51 5.13 -59.91 -0.31 -17.82 16 17 C -0.24 -6.90 10.47 -15.06 -0.16 -7.06 16 18 H 0.09 2.70 8.06 -52.49 -0.42 2.28 16 19 C 0.01 0.16 5.50 -17.43 -0.10 0.06 16 20 N -0.93 -29.43 13.97 55.49 0.78 -28.65 16 21 Si 0.88 22.14 27.74 -169.99 -4.71 17.43 16 22 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16 23 H -0.29 -7.43 7.11 56.52 0.40 -7.03 16 24 H -0.28 -6.51 6.52 56.52 0.37 -6.14 16 25 C 0.11 1.63 6.29 -2.98 -0.02 1.61 16 26 C 0.27 3.42 6.53 -81.82 -0.53 2.88 16 27 C -0.14 -1.75 5.44 -91.77 -0.50 -2.25 16 28 C -0.15 -1.53 10.04 -26.73 -0.27 -1.80 16 29 C -0.15 -1.64 10.24 -26.73 -0.27 -1.91 16 30 N -0.52 -6.06 9.34 -6.67 -0.06 -6.12 16 31 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.17 1.36 6.66 -52.49 -0.35 1.01 16 35 H 0.08 0.60 8.02 -51.93 -0.42 0.18 16 36 H 0.08 0.65 5.99 -51.93 -0.31 0.34 16 37 H 0.06 0.45 8.10 -51.93 -0.42 0.02 16 38 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 39 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 42 H 0.36 8.14 5.37 -40.82 -0.22 7.93 16 43 H 0.26 7.79 8.31 -40.82 -0.34 7.45 16 44 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 45 H 0.09 1.70 7.52 -51.93 -0.39 1.31 16 46 H 0.15 2.14 5.98 -51.93 -0.31 1.83 16 47 H 0.11 1.06 7.58 -51.93 -0.39 0.67 16 48 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 49 H 0.11 1.11 8.14 -51.93 -0.42 0.69 16 50 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 LS Contribution 401.95 15.07 6.06 6.06 Total: -1.00 -34.38 401.95 -10.41 -44.79 By element: Atomic # 1 Polarization: 15.25 SS G_CDS: -7.87 Total: 7.38 kcal Atomic # 6 Polarization: 4.15 SS G_CDS: -3.70 Total: 0.45 kcal Atomic # 7 Polarization: -66.54 SS G_CDS: -0.26 Total: -66.81 kcal Atomic # 8 Polarization: -9.38 SS G_CDS: 0.08 Total: -9.30 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -4.71 Total: 17.43 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -34.38 -10.41 -44.79 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271701389.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.324 kcal (2) G-P(sol) polarization free energy of solvation -34.383 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.941 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.408 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.791 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.533 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds