Wall clock time and date at job start Wed Apr 1 2020 03:02:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.31887 * 118.95113 * 2 1 4 4 C 1.32134 * 120.96629 * 179.72297 * 3 2 1 5 5 C 1.39960 * 118.92344 * 0.52485 * 4 3 2 6 6 C 1.47837 * 120.94075 * 179.74029 * 5 4 3 7 7 O 1.21555 * 119.99988 * 222.53963 * 6 5 4 8 8 N 1.34773 * 119.99944 * 42.54526 * 6 5 4 9 9 C 1.48118 * 127.03478 * 355.33200 * 8 6 5 10 10 C 1.54943 * 103.25895 * 140.67547 * 9 8 6 11 11 H 1.08998 * 110.74057 * 279.04558 * 10 9 8 12 12 C 1.52997 * 110.74297 * 155.71460 * 10 9 8 13 13 C 1.54625 * 102.83443 * 37.37811 * 10 9 8 14 14 H 1.08997 * 110.41309 * 97.08663 * 13 10 9 15 15 C 1.53004 * 110.32501 * 219.26224 * 13 10 9 16 16 N 1.46496 * 109.46775 * 182.07502 * 15 13 10 17 17 C 1.36937 * 119.99890 * 179.71919 * 16 15 13 18 18 H 1.08001 * 119.99705 * 0.28381 * 17 16 15 19 19 C 1.38808 * 120.00386 * 180.27205 * 17 16 15 20 20 N 1.31622 * 120.00231 * 180.02562 * 19 17 16 21 21 Si 1.86808 * 119.99935 * 0.02562 * 19 17 16 22 22 H 1.48496 * 109.47203 * 89.99522 * 21 19 17 23 23 H 1.48500 * 109.46936 * 209.99757 * 21 19 17 24 24 H 1.48507 * 109.46537 * 329.99487 * 21 19 17 25 25 C 1.47487 * 127.03470 * 175.29355 * 8 6 5 26 26 C 1.39930 * 118.12296 * 359.46733 * 5 4 3 27 27 C 1.50703 * 120.54029 * 180.25172 * 26 5 4 28 28 C 1.52995 * 117.49842 * 182.33655 * 27 26 5 29 29 C 1.53004 * 117.49732 * 113.71234 * 27 26 5 30 30 N 1.31856 * 118.95734 * 179.97438 * 2 1 3 31 31 H 1.08993 * 109.47178 * 270.02174 * 1 2 3 32 32 H 1.09003 * 109.47193 * 30.02830 * 1 2 3 33 33 H 1.09004 * 109.46935 * 150.02233 * 1 2 3 34 34 H 1.08000 * 120.53474 * 180.26291 * 4 3 2 35 35 H 1.08995 * 110.66379 * 259.11903 * 9 8 6 36 36 H 1.09001 * 110.66119 * 22.06586 * 9 8 6 37 37 H 1.09005 * 109.46539 * 306.58470 * 12 10 9 38 38 H 1.08997 * 109.47211 * 66.58324 * 12 10 9 39 39 H 1.08995 * 109.47101 * 186.58380 * 12 10 9 40 40 H 1.08996 * 109.47146 * 62.07389 * 15 13 10 41 41 H 1.08998 * 109.46768 * 302.07305 * 15 13 10 42 42 H 0.97000 * 120.00341 * 359.97438 * 16 15 13 43 43 H 0.97005 * 119.99579 * 180.02562 * 20 19 17 44 44 H 1.09002 * 109.91125 * 86.11944 * 25 8 6 45 45 H 1.08999 * 109.91395 * 324.84304 * 25 8 6 46 46 H 1.09001 * 115.54805 * 328.04612 * 27 26 5 47 47 H 1.09002 * 117.50350 * 359.97438 * 28 27 26 48 48 H 1.09002 * 117.50293 * 145.02280 * 28 27 26 49 49 H 1.08999 * 117.49871 * 214.97596 * 29 27 26 50 50 H 1.08998 * 117.49642 * 359.97438 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1454 1.1541 0.0000 4 6 3.4659 1.2005 0.0055 5 6 4.1855 0.0001 0.0001 6 6 5.6639 0.0001 0.0001 7 8 6.2716 -0.7724 -0.7150 8 7 6.3377 0.8564 0.7932 9 6 5.7632 1.9210 1.6479 10 6 6.6301 1.8537 2.9304 11 1 6.2899 1.0510 3.5846 12 6 6.6164 3.1958 3.6647 13 6 8.0406 1.5473 2.3758 14 1 8.6202 2.4657 2.2826 15 6 8.7648 0.5527 3.2853 16 7 10.1153 0.3140 2.7703 17 6 10.9573 -0.5426 3.4279 18 1 10.6242 -1.0456 4.3236 19 6 12.2390 -0.7644 2.9431 20 7 13.0482 -1.5881 3.5749 21 14 12.8154 0.1060 1.3940 22 1 13.4453 1.4003 1.7588 23 1 13.8062 -0.7451 0.6875 24 1 11.6526 0.3547 0.5043 25 6 7.7980 0.9248 0.9882 26 6 3.4661 -1.2001 0.0006 27 6 4.1858 -2.5243 0.0007 28 6 3.3317 -3.7924 -0.0541 29 6 4.0439 -3.4053 1.2435 30 7 2.1454 -1.1537 0.0005 31 1 -0.3633 0.0004 1.0276 32 1 -0.3634 0.8897 -0.5143 33 1 -0.3633 -0.8902 -0.5135 34 1 3.9815 2.1495 0.0097 35 1 5.8615 2.8946 1.1679 36 1 4.7183 1.7096 1.8754 37 1 6.9037 3.9899 2.9755 38 1 5.6143 3.3909 4.0465 39 1 7.3215 3.1627 4.4953 40 1 8.2131 -0.3871 3.3079 41 1 8.8274 0.9616 4.2937 42 1 10.4144 0.7655 1.9655 43 1 13.9439 -1.7428 3.2363 44 1 8.2466 1.5508 0.2169 45 1 8.2248 -0.0775 0.9512 46 1 5.1432 -2.5389 -0.5201 47 1 2.2492 -3.6692 -0.0898 48 1 3.7270 -4.6419 -0.6111 49 1 4.9079 -4.0000 1.5401 50 1 3.4305 -3.0270 2.0612 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001271701389.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:02:06 Heat of formation + Delta-G solvation = 34.462399 kcal Electronic energy + Delta-G solvation = -30609.416722 eV Core-core repulsion = 26637.094484 eV Total energy + Delta-G solvation = -3972.322238 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -42.62849 -41.05765 -39.26562 -38.30912 -36.65301 -34.94349 -34.31431 -33.91346 -33.33597 -31.16225 -29.92070 -27.53739 -27.37755 -26.47076 -25.11497 -24.30413 -23.35553 -22.56856 -22.23447 -21.31139 -20.83540 -19.72294 -19.06737 -18.26600 -17.60318 -17.50468 -16.65984 -16.56598 -16.51740 -16.25314 -15.95964 -15.39406 -15.27433 -15.10543 -14.84029 -14.54451 -14.25660 -14.11501 -13.84570 -13.68644 -13.54938 -13.34024 -13.28820 -13.09023 -13.04592 -12.85835 -12.74010 -12.60454 -12.56440 -12.38914 -12.13173 -11.92856 -11.87971 -11.64572 -11.57929 -11.48375 -11.27722 -11.03875 -10.98914 -10.47866 -10.44267 -9.85881 -9.33235 -8.05407 -5.39180 -0.67386 -0.21229 1.35249 1.39582 1.39770 1.46239 1.72601 2.36128 2.45977 2.63913 2.83180 2.87933 3.13536 3.18483 3.26384 3.38989 3.54255 3.65215 3.70983 3.85558 3.91938 3.97825 3.99197 4.11994 4.14577 4.34617 4.40644 4.48198 4.50710 4.59777 4.64114 4.70277 4.71812 4.78193 4.81092 4.82602 4.85305 4.89647 4.97320 5.02617 5.04916 5.16471 5.18480 5.22735 5.29469 5.35724 5.52398 5.70649 5.72562 6.18205 6.31779 6.84002 6.86633 7.05260 7.80506 7.99663 9.16207 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.013320 B = 0.002994 C = 0.002682 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2101.525183 B = 9350.098575 C =10436.293316 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C 0.330 3.670 3 N -0.528 5.528 4 C 0.197 3.803 5 C -0.252 4.252 6 C 0.586 3.414 7 O -0.569 6.569 8 N -0.609 5.609 9 C 0.096 3.904 10 C -0.090 4.090 11 H 0.075 0.925 12 C -0.135 4.135 13 C -0.096 4.096 14 H 0.107 0.893 15 C 0.166 3.834 16 N -0.757 5.757 17 C -0.235 4.235 18 H 0.054 0.946 19 C -0.064 4.064 20 N -0.984 5.984 21 Si 0.954 3.046 22 H -0.270 1.270 23 H -0.298 1.298 24 H -0.254 1.254 25 C 0.111 3.889 26 C 0.257 3.743 27 C -0.162 4.162 28 C -0.133 4.133 29 C -0.150 4.150 30 N -0.527 5.527 31 H 0.106 0.894 32 H 0.102 0.898 33 H 0.096 0.904 34 H 0.202 0.798 35 H 0.114 0.886 36 H 0.092 0.908 37 H 0.074 0.926 38 H 0.076 0.924 39 H 0.055 0.945 40 H 0.009 0.991 41 H 0.035 0.965 42 H 0.367 0.633 43 H 0.258 0.742 44 H 0.078 0.922 45 H 0.049 0.951 46 H 0.121 0.879 47 H 0.114 0.886 48 H 0.112 0.888 49 H 0.105 0.895 50 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.324 10.279 -6.591 31.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.065 3.935 3 N -0.243 5.243 4 C 0.030 3.970 5 C -0.259 4.259 6 C 0.375 3.625 7 O -0.449 6.449 8 N -0.340 5.340 9 C -0.025 4.025 10 C -0.110 4.110 11 H 0.094 0.906 12 C -0.193 4.193 13 C -0.115 4.115 14 H 0.125 0.875 15 C 0.040 3.960 16 N -0.403 5.403 17 C -0.366 4.366 18 H 0.072 0.928 19 C -0.255 4.255 20 N -0.634 5.634 21 Si 0.781 3.219 22 H -0.196 1.196 23 H -0.225 1.225 24 H -0.178 1.178 25 C -0.012 4.012 26 C 0.111 3.889 27 C -0.181 4.181 28 C -0.170 4.170 29 C -0.188 4.188 30 N -0.242 5.242 31 H 0.124 0.876 32 H 0.120 0.880 33 H 0.115 0.885 34 H 0.219 0.781 35 H 0.132 0.868 36 H 0.111 0.889 37 H 0.093 0.907 38 H 0.095 0.905 39 H 0.074 0.926 40 H 0.027 0.973 41 H 0.053 0.947 42 H 0.200 0.800 43 H 0.067 0.933 44 H 0.096 0.904 45 H 0.068 0.932 46 H 0.139 0.861 47 H 0.133 0.867 48 H 0.130 0.870 49 H 0.123 0.877 50 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -30.038 9.682 -6.867 32.298 hybrid contribution 2.400 -0.265 -0.708 2.516 sum -27.638 9.416 -7.575 30.165 Atomic orbital electron populations 1.20796 0.82472 1.05548 1.05470 1.24296 1.00062 0.82793 0.86377 1.68446 1.09315 1.30026 1.16502 1.23935 0.89517 0.97724 0.85858 1.21294 0.94577 0.97249 1.12826 1.17640 0.86306 0.79349 0.79233 1.90758 1.70205 1.41459 1.42457 1.48726 1.08105 1.33655 1.43531 1.23169 0.98420 0.91091 0.89820 1.22244 0.92258 1.00370 0.96095 0.90627 1.21723 1.03094 0.94102 1.00380 1.22367 0.97508 0.98991 0.92653 0.87534 1.20801 0.83717 0.95462 0.96014 1.42712 1.12764 1.53938 1.30861 1.19009 0.93866 1.17450 1.06290 0.92784 1.25523 0.96752 1.00720 1.02520 1.69890 1.08370 1.41805 1.43367 0.85426 0.78239 0.78277 0.79991 1.19607 1.22505 1.17835 1.22122 0.80105 1.01266 0.97702 1.20923 0.89067 0.93576 0.85325 1.21305 1.01646 0.87997 1.07114 1.23027 0.99661 0.95169 0.99132 1.22999 1.03511 1.00989 0.91262 1.68155 1.08169 1.30885 1.16979 0.87590 0.87959 0.88529 0.78114 0.86799 0.88932 0.90691 0.90493 0.92566 0.97290 0.94719 0.80011 0.93311 0.90384 0.93241 0.86075 0.86732 0.86966 0.87693 0.88368 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.83 10.31 71.23 0.73 -0.09 16 2 C 0.33 6.06 7.64 138.70 1.06 7.12 16 3 N -0.53 -9.77 10.32 -186.80 -1.93 -11.70 16 4 C 0.20 3.58 9.07 85.06 0.77 4.35 16 5 C -0.25 -6.12 5.43 -19.91 -0.11 -6.23 16 6 C 0.59 17.18 7.17 86.78 0.62 17.80 16 7 O -0.57 -21.50 15.10 -3.89 -0.06 -21.56 16 8 N -0.61 -15.12 3.29 -812.80 -2.67 -17.80 16 9 C 0.10 1.48 4.98 86.73 0.43 1.91 16 10 C -0.09 -1.64 3.21 -9.58 -0.03 -1.67 16 11 H 0.08 1.57 7.86 -2.39 -0.02 1.55 16 12 C -0.14 -1.74 9.16 71.98 0.66 -1.08 16 13 C -0.10 -2.47 2.65 -9.90 -0.03 -2.49 16 14 H 0.11 2.44 7.85 -2.39 -0.02 2.42 16 15 C 0.17 6.12 5.34 86.38 0.46 6.58 16 16 N -0.76 -35.30 5.13 -343.46 -1.76 -37.06 16 17 C -0.24 -13.66 10.47 84.03 0.88 -12.78 16 18 H 0.05 3.45 8.06 -2.91 -0.02 3.43 16 19 C -0.06 -3.82 5.50 84.86 0.47 -3.36 16 20 N -0.98 -64.16 13.97 21.65 0.30 -63.86 16 21 Si 0.95 46.12 27.74 68.60 1.90 48.02 16 22 H -0.27 -12.44 7.11 99.48 0.71 -11.73 16 23 H -0.30 -14.74 7.11 99.48 0.71 -14.04 16 24 H -0.25 -11.18 6.52 99.48 0.65 -10.53 16 25 C 0.11 3.21 6.29 86.53 0.54 3.75 16 26 C 0.26 6.51 6.53 42.92 0.28 6.79 16 27 C -0.16 -4.19 5.44 -11.54 -0.06 -4.25 16 28 C -0.13 -2.65 10.04 30.59 0.31 -2.34 16 29 C -0.15 -3.30 10.24 30.60 0.31 -2.98 16 30 N -0.53 -11.64 9.34 -175.03 -1.63 -13.27 16 31 H 0.11 0.73 8.14 -2.39 -0.02 0.71 16 32 H 0.10 0.75 8.14 -2.39 -0.02 0.73 16 33 H 0.10 0.81 8.14 -2.38 -0.02 0.79 16 34 H 0.20 2.33 6.66 -2.91 -0.02 2.31 16 35 H 0.11 1.08 8.02 -2.39 -0.02 1.06 16 36 H 0.09 1.20 5.99 -2.39 -0.01 1.19 16 37 H 0.07 0.76 8.10 -2.38 -0.02 0.74 16 38 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 39 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 40 H 0.01 0.37 8.14 -2.39 -0.02 0.35 16 41 H 0.03 1.27 8.14 -2.39 -0.02 1.25 16 42 H 0.37 16.19 5.37 -92.71 -0.50 15.69 16 43 H 0.26 16.01 8.31 -92.70 -0.77 15.24 16 44 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 45 H 0.05 1.87 7.52 -2.39 -0.02 1.86 16 46 H 0.12 3.83 5.98 -2.39 -0.01 3.81 16 47 H 0.11 2.13 7.58 -2.39 -0.02 2.12 16 48 H 0.11 1.94 8.14 -2.39 -0.02 1.92 16 49 H 0.10 2.30 8.14 -2.39 -0.02 2.28 16 50 H 0.10 2.06 8.14 -2.39 -0.02 2.04 16 Total: -1.00 -79.24 401.95 1.85 -77.39 By element: Atomic # 1 Polarization: 28.40 SS G_CDS: 0.40 Total: 28.80 kcal Atomic # 6 Polarization: 3.73 SS G_CDS: 7.31 Total: 11.03 kcal Atomic # 7 Polarization: -135.99 SS G_CDS: -7.70 Total: -143.69 kcal Atomic # 8 Polarization: -21.50 SS G_CDS: -0.06 Total: -21.56 kcal Atomic # 14 Polarization: 46.12 SS G_CDS: 1.90 Total: 48.02 kcal Total: -79.24 1.85 -77.39 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271701389.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.855 kcal (2) G-P(sol) polarization free energy of solvation -79.242 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.613 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.850 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.392 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.462 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds