Wall clock time and date at job start Wed Apr 1 2020 03:10:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 N 1.31805 * 119.12435 * 2 1 4 4 C 1.32317 * 120.82039 * 179.97438 * 3 2 1 5 5 C 1.38627 * 119.09865 * 359.74971 * 4 3 2 6 6 C 1.38574 * 118.39994 * 0.50986 * 5 4 3 7 7 C 1.50696 * 120.44893 * 179.75901 * 6 5 4 8 8 N 1.46903 * 109.47000 * 94.72175 * 7 6 5 9 9 C 1.48648 * 111.00079 * 290.13117 * 8 7 6 10 10 C 1.54642 * 104.63026 * 201.49001 * 9 8 7 11 11 C 1.53250 * 104.67836 * 23.68227 * 10 9 8 12 12 C 1.53622 * 111.05353 * 239.01710 * 11 10 9 13 13 C 1.54708 * 101.50666 * 262.68949 * 12 11 10 14 14 N 1.46881 * 105.51610 * 335.46802 * 13 12 11 15 15 C 1.46507 * 124.37154 * 196.82549 * 14 13 12 16 16 C 1.53004 * 109.46773 * 90.00435 * 15 14 13 17 17 C 1.50695 * 109.46637 * 180.02562 * 16 15 14 18 18 H 1.08004 * 120.00546 * 0.27598 * 17 16 15 19 19 C 1.37885 * 119.99721 * 179.97438 * 17 16 15 20 20 N 1.31514 * 120.00035 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 119.99853 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.47093 * 60.00328 * 21 19 17 23 23 H 1.48495 * 109.47002 * 180.02562 * 21 19 17 24 24 H 1.48503 * 109.47239 * 300.00048 * 21 19 17 25 25 C 1.34753 * 111.25889 * 17.09436 * 14 13 12 26 26 O 1.21276 * 125.14029 * 178.70493 * 25 14 13 27 27 C 1.48809 * 110.99979 * 174.51052 * 8 7 6 28 28 N 1.31778 * 119.11952 * 180.02562 * 2 1 3 29 29 H 1.09000 * 109.47435 * 269.97999 * 1 2 3 30 30 H 1.09003 * 109.46694 * 29.97599 * 1 2 3 31 31 H 1.08996 * 109.47335 * 149.97413 * 1 2 3 32 32 H 1.07999 * 120.45401 * 180.02562 * 4 3 2 33 33 H 1.08003 * 120.79784 * 180.25100 * 5 4 3 34 34 H 1.09003 * 109.47470 * 334.72875 * 7 6 5 35 35 H 1.09000 * 109.47767 * 214.72412 * 7 6 5 36 36 H 1.09001 * 110.40569 * 82.70391 * 9 8 7 37 37 H 1.09001 * 110.40256 * 320.27193 * 9 8 7 38 38 H 1.09004 * 110.39521 * 264.88092 * 10 9 8 39 39 H 1.09002 * 110.39990 * 142.48190 * 10 9 8 40 40 H 1.08995 * 111.02316 * 144.62968 * 12 11 10 41 41 H 1.09004 * 111.01634 * 20.73869 * 12 11 10 42 42 H 1.09001 * 110.23509 * 216.45900 * 13 12 11 43 43 H 1.08997 * 110.31035 * 94.52156 * 13 12 11 44 44 H 1.09000 * 109.46860 * 330.00633 * 15 14 13 45 45 H 1.08997 * 109.47067 * 209.99984 * 15 14 13 46 46 H 1.08992 * 109.47421 * 60.00163 * 16 15 14 47 47 H 1.08997 * 109.46955 * 299.99616 * 16 15 14 48 48 H 0.97000 * 119.99706 * 179.97438 * 20 19 17 49 49 H 1.09001 * 110.45619 * 39.48329 * 27 8 7 50 50 H 1.09001 * 110.45653 * 276.91665 * 27 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.1486 1.1514 0.0000 4 6 3.4712 1.1906 0.0005 5 6 4.1809 -0.0002 0.0063 6 6 3.4713 -1.1905 0.0006 7 6 4.1960 -2.5117 0.0011 8 7 4.3253 -2.9988 1.3810 9 6 5.2813 -2.1629 2.1536 10 6 5.7313 -3.0662 3.3254 11 6 5.4940 -4.4958 2.8270 12 6 4.5210 -5.2470 3.7483 13 6 5.4982 -6.0360 4.6517 14 7 6.7320 -6.1765 3.8672 15 6 7.7964 -7.1382 4.1649 16 6 7.5203 -8.4493 3.4261 17 6 8.6148 -9.4386 3.7328 18 1 9.4239 -9.1617 4.3925 19 6 8.5801 -10.6996 3.1761 20 7 7.5920 -11.0387 2.3771 21 14 9.9372 -11.9259 3.5556 22 1 9.9796 -12.1804 5.0180 23 1 9.6692 -13.1984 2.8388 24 1 11.2421 -11.3734 3.1113 25 6 6.7612 -5.3026 2.8418 26 8 7.6717 -5.1867 2.0492 27 6 4.9185 -4.3631 1.4115 28 7 2.1483 -1.1512 -0.0005 29 1 -0.3634 -0.0004 1.0276 30 1 -0.3633 0.8902 -0.5135 31 1 -0.3634 -0.8897 -0.5142 32 1 3.9908 2.1373 0.0009 33 1 5.2609 -0.0003 0.0110 34 1 5.1876 -2.3825 -0.4329 35 1 3.6330 -3.2353 -0.5884 36 1 4.7852 -1.2690 2.5316 37 1 6.1356 -1.8912 1.5335 38 1 5.1281 -2.8676 4.2113 39 1 6.7882 -2.9098 3.5415 40 1 3.8845 -5.9228 3.1771 41 1 3.9219 -4.5507 4.3352 42 1 5.0863 -7.0177 4.8856 43 1 5.6959 -5.4822 5.5695 44 1 7.8272 -7.3254 5.2382 45 1 8.7542 -6.7324 3.8391 46 1 7.4895 -8.2621 2.3528 47 1 6.5625 -8.8550 3.7518 48 1 7.5679 -11.9257 1.9852 49 1 5.7111 -4.4507 0.6683 50 1 4.1498 -5.1168 1.2406 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001272840459.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:10:28 Heat of formation + Delta-G solvation = 20.187518 kcal Electronic energy + Delta-G solvation = -29859.504787 eV Core-core repulsion = 25886.563544 eV Total energy + Delta-G solvation = -3972.941243 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.45923 -40.88132 -38.17313 -36.05650 -34.92311 -33.80891 -33.52511 -32.32445 -30.65393 -29.29735 -28.83985 -28.09253 -26.93762 -25.02250 -23.83951 -23.35996 -22.48098 -21.82205 -21.25269 -20.26660 -18.65513 -17.91626 -16.80380 -16.62738 -16.37071 -15.83058 -15.61709 -15.52280 -15.35391 -15.10468 -14.61771 -14.44421 -14.27328 -13.92970 -13.73390 -13.36705 -13.19042 -12.98519 -12.77065 -12.72346 -12.63477 -12.58110 -12.17809 -12.03714 -11.87817 -11.66172 -11.51148 -11.28774 -11.16365 -10.94581 -10.92871 -10.87331 -10.73547 -10.63780 -10.01038 -9.88950 -9.75771 -9.50993 -9.38918 -9.14221 -8.75870 -8.38957 -8.04382 -6.04091 -4.07792 0.56468 0.75334 2.90885 3.28142 3.31523 3.35899 3.37876 3.51805 3.56564 3.74612 3.86455 4.15466 4.28159 4.38741 4.43874 4.51101 4.64818 4.73154 4.85533 4.93547 4.98288 5.07155 5.09995 5.13259 5.22365 5.27122 5.31909 5.37385 5.40147 5.48432 5.53899 5.59128 5.65940 5.67275 5.74806 5.82642 5.89857 5.93162 6.02898 6.10335 6.10702 6.43635 6.49670 6.63220 6.75774 6.78296 6.97297 7.47560 7.64169 7.82262 7.82488 7.95249 8.31228 8.62385 8.98601 9.56241 11.07213 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.024912 B = 0.001958 C = 0.001942 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1123.680631 B =14295.945915 C =14411.580597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C 0.317 3.683 3 N -0.525 5.525 4 C 0.151 3.849 5 C -0.231 4.231 6 C 0.196 3.804 7 C 0.088 3.912 8 N -0.497 5.497 9 C 0.032 3.968 10 C -0.098 4.098 11 C -0.099 4.099 12 C -0.114 4.114 13 C 0.099 3.901 14 N -0.609 5.609 15 C 0.127 3.873 16 C 0.013 3.987 17 C -0.524 4.524 18 H 0.056 0.944 19 C 0.059 3.941 20 N -0.892 5.892 21 Si 0.896 3.104 22 H -0.276 1.276 23 H -0.287 1.287 24 H -0.276 1.276 25 C 0.525 3.475 26 O -0.531 6.531 27 C 0.056 3.944 28 N -0.500 5.500 29 H 0.086 0.914 30 H 0.084 0.916 31 H 0.086 0.914 32 H 0.168 0.832 33 H 0.145 0.855 34 H 0.063 0.937 35 H 0.101 0.899 36 H 0.079 0.921 37 H 0.050 0.950 38 H 0.082 0.918 39 H 0.074 0.926 40 H 0.085 0.915 41 H 0.089 0.911 42 H 0.081 0.919 43 H 0.066 0.934 44 H 0.066 0.934 45 H 0.070 0.930 46 H 0.020 0.980 47 H 0.017 0.983 48 H 0.262 0.738 49 H 0.063 0.937 50 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.548 24.044 -1.282 27.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.050 3.950 3 N -0.240 5.240 4 C -0.015 4.015 5 C -0.254 4.254 6 C 0.049 3.951 7 C -0.041 4.041 8 N -0.221 5.221 9 C -0.096 4.096 10 C -0.136 4.136 11 C -0.104 4.104 12 C -0.151 4.151 13 C -0.025 4.025 14 N -0.341 5.341 15 C 0.007 3.993 16 C -0.025 4.025 17 C -0.562 4.562 18 H 0.075 0.925 19 C -0.143 4.143 20 N -0.531 5.531 21 Si 0.723 3.277 22 H -0.202 1.202 23 H -0.212 1.212 24 H -0.202 1.202 25 C 0.311 3.689 26 O -0.408 6.408 27 C -0.072 4.072 28 N -0.215 5.215 29 H 0.104 0.896 30 H 0.103 0.897 31 H 0.105 0.895 32 H 0.185 0.815 33 H 0.163 0.837 34 H 0.081 0.919 35 H 0.119 0.881 36 H 0.097 0.903 37 H 0.068 0.932 38 H 0.100 0.900 39 H 0.093 0.907 40 H 0.104 0.896 41 H 0.108 0.892 42 H 0.100 0.900 43 H 0.084 0.916 44 H 0.084 0.916 45 H 0.088 0.912 46 H 0.039 0.961 47 H 0.036 0.964 48 H 0.071 0.929 49 H 0.081 0.919 50 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -13.601 23.879 -1.558 27.524 hybrid contribution 2.552 -0.799 -0.147 2.678 sum -11.049 23.080 -1.705 25.645 Atomic orbital electron populations 1.20569 0.85682 1.04111 1.03970 1.23316 0.98257 0.83307 0.90147 1.68251 1.10177 1.30644 1.14951 1.23197 0.89679 0.98534 0.90043 1.22794 1.02936 0.94352 1.05279 1.21478 0.89591 0.95109 0.88949 1.21186 0.98624 0.92450 0.91834 1.65482 1.43920 1.02359 1.10322 1.23255 0.94253 0.96816 0.95293 1.22139 1.01999 0.91277 0.98180 1.21365 0.95463 0.96397 0.97140 1.22656 0.96395 0.98856 0.97241 1.22127 0.84820 1.01237 0.94288 1.48631 1.20543 1.36052 1.28893 1.21818 0.87912 0.89666 0.99894 1.19390 0.97274 0.89740 0.96086 1.21045 1.08636 0.97532 1.29024 0.92538 1.25007 0.95924 0.98358 0.94995 1.69961 1.31316 1.20502 1.31325 0.86605 0.82324 0.80340 0.78419 1.20182 1.21246 1.20155 1.20166 0.87602 0.80314 0.80862 1.90688 1.39535 1.69268 1.41299 1.22976 0.98438 0.90780 0.94957 1.68111 1.09526 1.30267 1.13623 0.89557 0.89741 0.89517 0.81503 0.83714 0.91928 0.88083 0.90290 0.93158 0.89955 0.90727 0.89638 0.89213 0.90015 0.91623 0.91599 0.91167 0.96144 0.96430 0.92851 0.91887 0.88817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.60 10.32 36.01 0.37 -0.22 16 2 C 0.32 3.25 7.64 -157.20 -1.20 2.05 16 3 N -0.53 -5.28 10.33 -10.72 -0.11 -5.39 16 4 C 0.15 1.21 11.31 -17.20 -0.19 1.01 16 5 C -0.23 -1.86 9.35 -39.31 -0.37 -2.23 16 6 C 0.20 1.98 5.96 -82.25 -0.49 1.49 16 7 C 0.09 0.86 5.17 -4.98 -0.03 0.84 16 8 N -0.50 -5.41 5.36 -231.59 -1.24 -6.65 16 9 C 0.03 0.32 5.64 -1.99 -0.01 0.31 16 10 C -0.10 -1.06 6.32 -25.74 -0.16 -1.22 16 11 C -0.10 -1.30 0.83 -155.24 -0.13 -1.43 16 12 C -0.11 -1.28 6.24 -25.51 -0.16 -1.44 16 13 C 0.10 1.30 7.36 -2.94 -0.02 1.28 16 14 N -0.61 -10.85 2.94 -172.52 -0.51 -11.36 16 15 C 0.13 2.67 5.89 -4.04 -0.02 2.64 16 16 C 0.01 0.34 5.30 -27.88 -0.15 0.19 16 17 C -0.52 -14.79 9.11 -34.44 -0.31 -15.10 16 18 H 0.06 1.53 7.74 -52.48 -0.41 1.12 16 19 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 20 N -0.89 -26.92 13.29 55.43 0.74 -26.18 16 21 Si 0.90 21.65 29.54 -169.99 -5.02 16.63 16 22 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 23 H -0.29 -6.87 7.11 56.52 0.40 -6.46 16 24 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 25 C 0.52 9.47 6.64 -11.22 -0.07 9.39 16 26 O -0.53 -11.69 17.09 5.56 0.10 -11.60 16 27 C 0.06 0.71 5.65 -2.57 -0.01 0.69 16 28 N -0.50 -5.67 10.27 -6.99 -0.07 -5.74 16 29 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.09 0.56 8.14 -51.93 -0.42 0.13 16 32 H 0.17 0.77 8.06 -52.49 -0.42 0.35 16 33 H 0.15 0.85 8.06 -52.48 -0.42 0.43 16 34 H 0.06 0.55 7.80 -51.93 -0.41 0.15 16 35 H 0.10 1.00 8.13 -51.93 -0.42 0.58 16 36 H 0.08 0.73 8.10 -51.93 -0.42 0.31 16 37 H 0.05 0.49 7.81 -51.93 -0.41 0.09 16 38 H 0.08 0.76 7.32 -51.93 -0.38 0.38 16 39 H 0.07 0.87 7.75 -51.93 -0.40 0.47 16 40 H 0.09 0.97 7.51 -51.93 -0.39 0.58 16 41 H 0.09 0.81 7.42 -51.93 -0.39 0.43 16 42 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 43 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 44 H 0.07 1.26 8.14 -51.93 -0.42 0.83 16 45 H 0.07 1.56 7.93 -51.93 -0.41 1.14 16 46 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 47 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 48 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 49 H 0.06 0.90 7.39 -51.93 -0.38 0.51 16 50 H 0.09 1.14 7.46 -51.93 -0.39 0.75 16 LS Contribution 406.26 15.07 6.12 6.12 Total: -1.00 -35.10 406.26 -11.23 -46.33 By element: Atomic # 1 Polarization: 6.17 SS G_CDS: -8.16 Total: -1.99 kcal Atomic # 6 Polarization: 2.90 SS G_CDS: -3.06 Total: -0.16 kcal Atomic # 7 Polarization: -54.13 SS G_CDS: -1.20 Total: -55.32 kcal Atomic # 8 Polarization: -11.69 SS G_CDS: 0.10 Total: -11.60 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.63 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -35.10 -11.23 -46.33 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001272840459.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.515 kcal (2) G-P(sol) polarization free energy of solvation -35.102 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.413 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.327 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.188 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds