Wall clock time and date at job start Wed Apr 1 2020 03:10:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 N 1.31805 * 119.12435 * 2 1 4 4 C 1.32317 * 120.82039 * 179.97438 * 3 2 1 5 5 C 1.38627 * 119.09865 * 359.74971 * 4 3 2 6 6 C 1.38574 * 118.39994 * 0.50986 * 5 4 3 7 7 C 1.50696 * 120.44893 * 179.75901 * 6 5 4 8 8 N 1.46903 * 109.47000 * 94.72175 * 7 6 5 9 9 C 1.48648 * 111.00079 * 290.13117 * 8 7 6 10 10 C 1.54642 * 104.63026 * 201.49001 * 9 8 7 11 11 C 1.53250 * 104.67836 * 23.68227 * 10 9 8 12 12 C 1.53622 * 111.05353 * 239.01710 * 11 10 9 13 13 C 1.54708 * 101.50666 * 262.68949 * 12 11 10 14 14 N 1.46881 * 105.51610 * 335.46802 * 13 12 11 15 15 C 1.46507 * 124.37154 * 196.82549 * 14 13 12 16 16 C 1.53004 * 109.46773 * 90.00435 * 15 14 13 17 17 C 1.50695 * 109.46637 * 180.02562 * 16 15 14 18 18 H 1.08004 * 120.00546 * 0.27598 * 17 16 15 19 19 C 1.37885 * 119.99721 * 179.97438 * 17 16 15 20 20 N 1.31514 * 120.00035 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 119.99853 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.47093 * 60.00328 * 21 19 17 23 23 H 1.48495 * 109.47002 * 180.02562 * 21 19 17 24 24 H 1.48503 * 109.47239 * 300.00048 * 21 19 17 25 25 C 1.34753 * 111.25889 * 17.09436 * 14 13 12 26 26 O 1.21276 * 125.14029 * 178.70493 * 25 14 13 27 27 C 1.48809 * 110.99979 * 174.51052 * 8 7 6 28 28 N 1.31778 * 119.11952 * 180.02562 * 2 1 3 29 29 H 1.09000 * 109.47435 * 269.97999 * 1 2 3 30 30 H 1.09003 * 109.46694 * 29.97599 * 1 2 3 31 31 H 1.08996 * 109.47335 * 149.97413 * 1 2 3 32 32 H 1.07999 * 120.45401 * 180.02562 * 4 3 2 33 33 H 1.08003 * 120.79784 * 180.25100 * 5 4 3 34 34 H 1.09003 * 109.47470 * 334.72875 * 7 6 5 35 35 H 1.09000 * 109.47767 * 214.72412 * 7 6 5 36 36 H 1.09001 * 110.40569 * 82.70391 * 9 8 7 37 37 H 1.09001 * 110.40256 * 320.27193 * 9 8 7 38 38 H 1.09004 * 110.39521 * 264.88092 * 10 9 8 39 39 H 1.09002 * 110.39990 * 142.48190 * 10 9 8 40 40 H 1.08995 * 111.02316 * 144.62968 * 12 11 10 41 41 H 1.09004 * 111.01634 * 20.73869 * 12 11 10 42 42 H 1.09001 * 110.23509 * 216.45900 * 13 12 11 43 43 H 1.08997 * 110.31035 * 94.52156 * 13 12 11 44 44 H 1.09000 * 109.46860 * 330.00633 * 15 14 13 45 45 H 1.08997 * 109.47067 * 209.99984 * 15 14 13 46 46 H 1.08992 * 109.47421 * 60.00163 * 16 15 14 47 47 H 1.08997 * 109.46955 * 299.99616 * 16 15 14 48 48 H 0.97000 * 119.99706 * 179.97438 * 20 19 17 49 49 H 1.09001 * 110.45619 * 39.48329 * 27 8 7 50 50 H 1.09001 * 110.45653 * 276.91665 * 27 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.1486 1.1514 0.0000 4 6 3.4712 1.1906 0.0005 5 6 4.1809 -0.0002 0.0063 6 6 3.4713 -1.1905 0.0006 7 6 4.1960 -2.5117 0.0011 8 7 4.3253 -2.9988 1.3810 9 6 5.2813 -2.1629 2.1536 10 6 5.7313 -3.0662 3.3254 11 6 5.4940 -4.4958 2.8270 12 6 4.5210 -5.2470 3.7483 13 6 5.4982 -6.0360 4.6517 14 7 6.7320 -6.1765 3.8672 15 6 7.7964 -7.1382 4.1649 16 6 7.5203 -8.4493 3.4261 17 6 8.6148 -9.4386 3.7328 18 1 9.4239 -9.1617 4.3925 19 6 8.5801 -10.6996 3.1761 20 7 7.5920 -11.0387 2.3771 21 14 9.9372 -11.9259 3.5556 22 1 9.9796 -12.1804 5.0180 23 1 9.6692 -13.1984 2.8388 24 1 11.2421 -11.3734 3.1113 25 6 6.7612 -5.3026 2.8418 26 8 7.6717 -5.1867 2.0492 27 6 4.9185 -4.3631 1.4115 28 7 2.1483 -1.1512 -0.0005 29 1 -0.3634 -0.0004 1.0276 30 1 -0.3633 0.8902 -0.5135 31 1 -0.3634 -0.8897 -0.5142 32 1 3.9908 2.1373 0.0009 33 1 5.2609 -0.0003 0.0110 34 1 5.1876 -2.3825 -0.4329 35 1 3.6330 -3.2353 -0.5884 36 1 4.7852 -1.2690 2.5316 37 1 6.1356 -1.8912 1.5335 38 1 5.1281 -2.8676 4.2113 39 1 6.7882 -2.9098 3.5415 40 1 3.8845 -5.9228 3.1771 41 1 3.9219 -4.5507 4.3352 42 1 5.0863 -7.0177 4.8856 43 1 5.6959 -5.4822 5.5695 44 1 7.8272 -7.3254 5.2382 45 1 8.7542 -6.7324 3.8391 46 1 7.4895 -8.2621 2.3528 47 1 6.5625 -8.8550 3.7518 48 1 7.5679 -11.9257 1.9852 49 1 5.7111 -4.4507 0.6683 50 1 4.1498 -5.1168 1.2406 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001272840459.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:10:27 Heat of formation + Delta-G solvation = -3.624596 kcal Electronic energy + Delta-G solvation = -29860.537357 eV Core-core repulsion = 25886.563544 eV Total energy + Delta-G solvation = -3973.973814 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.28179 -41.92635 -39.25647 -37.51114 -36.09979 -35.20344 -34.38677 -33.71586 -31.89518 -30.59591 -29.62593 -29.12924 -27.85627 -26.86686 -24.61842 -24.38989 -23.53144 -23.20131 -22.09281 -21.64498 -19.96368 -18.68967 -18.60629 -17.69229 -17.22653 -17.15351 -16.74697 -16.55765 -16.33335 -16.13449 -16.04559 -15.68266 -15.29408 -14.89208 -14.76624 -14.55869 -14.44818 -14.23416 -14.06589 -13.81006 -13.56750 -13.48220 -13.39556 -13.18296 -12.94314 -12.83573 -12.72224 -12.63000 -12.52898 -12.35362 -12.00859 -11.97894 -11.82979 -11.75465 -11.64948 -11.58954 -11.43555 -10.70461 -10.59837 -10.38572 -10.21211 -9.64257 -9.56730 -8.24760 -6.37733 -0.10605 0.09422 1.38195 1.42374 1.49308 1.52296 2.10713 2.39901 2.59057 2.88984 2.99230 3.08599 3.15521 3.31235 3.33399 3.48785 3.63496 3.87035 3.96959 4.00457 4.14728 4.20237 4.24859 4.30190 4.34714 4.44291 4.45264 4.53055 4.58910 4.60552 4.63935 4.68076 4.73737 4.74629 4.77836 4.85510 4.92334 4.95508 5.03894 5.05281 5.08359 5.17154 5.31821 5.44915 5.48849 5.57409 5.60375 5.79297 5.81228 6.08822 6.13695 6.27495 6.77418 7.14637 7.18000 7.32063 8.87099 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.024912 B = 0.001958 C = 0.001942 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1123.680631 B =14295.945915 C =14411.580597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C 0.301 3.699 3 N -0.541 5.541 4 C 0.150 3.850 5 C -0.226 4.226 6 C 0.181 3.819 7 C 0.089 3.911 8 N -0.494 5.494 9 C 0.035 3.965 10 C -0.093 4.093 11 C -0.092 4.092 12 C -0.103 4.103 13 C 0.093 3.907 14 N -0.617 5.617 15 C 0.141 3.859 16 C 0.025 3.975 17 C -0.546 4.546 18 H 0.067 0.933 19 C -0.001 4.001 20 N -0.932 5.932 21 Si 0.971 3.029 22 H -0.259 1.259 23 H -0.283 1.283 24 H -0.270 1.270 25 C 0.512 3.488 26 O -0.583 6.583 27 C 0.059 3.941 28 N -0.526 5.526 29 H 0.094 0.906 30 H 0.094 0.906 31 H 0.088 0.912 32 H 0.201 0.799 33 H 0.167 0.833 34 H 0.070 0.930 35 H 0.093 0.907 36 H 0.094 0.906 37 H 0.050 0.950 38 H 0.110 0.890 39 H 0.064 0.936 40 H 0.082 0.918 41 H 0.126 0.874 42 H 0.078 0.922 43 H 0.099 0.901 44 H 0.091 0.909 45 H 0.053 0.947 46 H -0.027 1.027 47 H 0.001 0.999 48 H 0.264 0.736 49 H 0.038 0.962 50 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.888 25.672 0.542 28.731 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.034 3.966 3 N -0.257 5.257 4 C -0.015 4.015 5 C -0.248 4.248 6 C 0.034 3.966 7 C -0.040 4.040 8 N -0.218 5.218 9 C -0.092 4.092 10 C -0.131 4.131 11 C -0.096 4.096 12 C -0.140 4.140 13 C -0.029 4.029 14 N -0.348 5.348 15 C 0.020 3.980 16 C -0.013 4.013 17 C -0.584 4.584 18 H 0.085 0.915 19 C -0.199 4.199 20 N -0.572 5.572 21 Si 0.794 3.206 22 H -0.184 1.184 23 H -0.209 1.209 24 H -0.195 1.195 25 C 0.300 3.700 26 O -0.464 6.464 27 C -0.069 4.069 28 N -0.242 5.242 29 H 0.113 0.887 30 H 0.113 0.887 31 H 0.107 0.893 32 H 0.218 0.782 33 H 0.185 0.815 34 H 0.088 0.912 35 H 0.112 0.888 36 H 0.113 0.887 37 H 0.068 0.932 38 H 0.128 0.872 39 H 0.083 0.917 40 H 0.101 0.899 41 H 0.145 0.855 42 H 0.096 0.904 43 H 0.117 0.883 44 H 0.110 0.890 45 H 0.071 0.929 46 H -0.009 1.009 47 H 0.019 0.981 48 H 0.073 0.927 49 H 0.056 0.944 50 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -13.974 25.526 0.298 29.102 hybrid contribution 2.651 -1.274 -0.769 3.040 sum -11.324 24.251 -0.471 26.769 Atomic orbital electron populations 1.20640 0.84113 1.04691 1.04650 1.23812 0.99453 0.83201 0.90140 1.68325 1.11275 1.30551 1.15505 1.23799 0.89211 0.99882 0.88626 1.23015 1.04000 0.93610 1.04202 1.21534 0.89605 0.95595 0.89852 1.21167 0.98985 0.92594 0.91209 1.65493 1.43697 1.01452 1.11126 1.23278 0.94189 0.96900 0.94850 1.22187 1.02030 0.89425 0.99457 1.21334 0.92977 0.97228 0.98046 1.22713 0.95683 0.98932 0.96664 1.22462 0.83111 1.02034 0.95267 1.48741 1.21377 1.35053 1.29669 1.21374 0.88432 0.87874 1.00353 1.19198 0.96200 0.92309 0.93629 1.21520 1.09367 0.98288 1.29249 0.91487 1.26036 0.98561 1.00674 0.94604 1.70108 1.33478 1.21169 1.32422 0.85420 0.78756 0.77345 0.79038 1.18383 1.20858 1.19518 1.21096 0.88617 0.80477 0.79804 1.90642 1.41840 1.70878 1.42996 1.22878 0.97686 0.92231 0.94149 1.68099 1.10286 1.31070 1.14718 0.88723 0.88728 0.89337 0.78215 0.81515 0.91163 0.88835 0.88749 0.93185 0.87182 0.91709 0.89942 0.85549 0.90374 0.88297 0.89044 0.92878 1.00910 0.98080 0.92685 0.94369 0.88797 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.08 10.32 71.24 0.74 -0.35 16 2 C 0.30 5.87 7.64 138.75 1.06 6.93 16 3 N -0.54 -10.01 10.33 -187.83 -1.94 -11.95 16 4 C 0.15 2.05 11.31 84.71 0.96 3.01 16 5 C -0.23 -3.19 9.35 22.44 0.21 -2.98 16 6 C 0.18 3.45 5.96 42.56 0.25 3.70 16 7 C 0.09 1.71 5.17 85.56 0.44 2.16 16 8 N -0.49 -10.21 5.36 -886.61 -4.75 -14.97 16 9 C 0.04 0.64 5.64 86.52 0.49 1.13 16 10 C -0.09 -1.80 6.32 31.24 0.20 -1.61 16 11 C -0.09 -2.32 0.83 -52.66 -0.04 -2.37 16 12 C -0.10 -2.08 6.24 31.39 0.20 -1.89 16 13 C 0.09 2.28 7.36 86.89 0.64 2.92 16 14 N -0.62 -22.14 2.94 -818.13 -2.41 -24.55 16 15 C 0.14 6.06 5.89 86.38 0.51 6.56 16 16 C 0.02 1.34 5.30 29.85 0.16 1.50 16 17 C -0.55 -31.43 9.11 25.60 0.23 -31.20 16 18 H 0.07 3.62 7.74 -2.91 -0.02 3.60 16 19 C 0.00 -0.03 5.46 84.66 0.46 0.43 16 20 N -0.93 -57.75 13.29 21.45 0.28 -57.46 16 21 Si 0.97 44.57 29.54 68.60 2.03 46.59 16 22 H -0.26 -11.15 7.11 99.48 0.71 -10.45 16 23 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 24 H -0.27 -12.07 7.11 99.48 0.71 -11.37 16 25 C 0.51 18.93 6.64 87.51 0.58 19.52 16 26 O -0.58 -27.11 17.09 -3.02 -0.05 -27.16 16 27 C 0.06 1.49 5.65 86.06 0.49 1.98 16 28 N -0.53 -11.54 10.27 -176.03 -1.81 -13.34 16 29 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 30 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 31 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 32 H 0.20 1.19 8.06 -2.91 -0.02 1.17 16 33 H 0.17 1.51 8.06 -2.91 -0.02 1.49 16 34 H 0.07 1.22 7.80 -2.39 -0.02 1.21 16 35 H 0.09 1.91 8.13 -2.39 -0.02 1.89 16 36 H 0.09 1.45 8.10 -2.39 -0.02 1.43 16 37 H 0.05 0.91 7.81 -2.39 -0.02 0.89 16 38 H 0.11 1.55 7.32 -2.38 -0.02 1.54 16 39 H 0.06 1.42 7.75 -2.39 -0.02 1.40 16 40 H 0.08 1.75 7.51 -2.39 -0.02 1.74 16 41 H 0.13 1.72 7.42 -2.38 -0.02 1.70 16 42 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 43 H 0.10 1.83 8.14 -2.39 -0.02 1.81 16 44 H 0.09 3.42 8.14 -2.39 -0.02 3.41 16 45 H 0.05 2.44 7.93 -2.39 -0.02 2.42 16 46 H -0.03 -1.74 8.14 -2.39 -0.02 -1.76 16 47 H 0.00 0.05 8.14 -2.39 -0.02 0.03 16 48 H 0.26 15.38 8.31 -92.71 -0.77 14.61 16 49 H 0.04 1.15 7.39 -2.39 -0.02 1.13 16 50 H 0.09 2.33 7.46 -2.39 -0.02 2.32 16 Total: -1.00 -80.01 406.26 -0.16 -80.17 By element: Atomic # 1 Polarization: 12.30 SS G_CDS: 0.92 Total: 13.23 kcal Atomic # 6 Polarization: 1.88 SS G_CDS: 7.57 Total: 9.44 kcal Atomic # 7 Polarization: -111.65 SS G_CDS: -10.63 Total: -122.28 kcal Atomic # 8 Polarization: -27.11 SS G_CDS: -0.05 Total: -27.16 kcal Atomic # 14 Polarization: 44.57 SS G_CDS: 2.03 Total: 46.59 kcal Total: -80.01 -0.16 -80.17 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001272840459.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.550 kcal (2) G-P(sol) polarization free energy of solvation -80.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.462 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.175 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.625 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds