Wall clock time and date at job start Wed Apr 1 2020 03:36:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53002 * 109.46883 * 2 1 4 4 N 1.46495 * 109.45849 * 305.51277 * 3 2 1 5 5 C 1.36934 * 120.00552 * 302.96160 * 4 3 2 6 6 H 1.08002 * 120.00070 * 354.39637 * 5 4 3 7 7 C 1.38809 * 120.00531 * 174.39218 * 5 4 3 8 8 N 1.31614 * 120.00265 * 180.02562 * 7 5 4 9 9 Si 1.86803 * 119.99655 * 0.02562 * 7 5 4 10 10 H 1.48496 * 109.47240 * 90.00101 * 9 7 5 11 11 H 1.48506 * 109.47163 * 209.99708 * 9 7 5 12 12 H 1.48503 * 109.47188 * 329.99991 * 9 7 5 13 13 C 1.53038 * 109.45791 * 185.54452 * 3 2 1 14 14 C 1.53187 * 109.31219 * 178.60189 * 13 3 2 15 15 N 1.46924 * 108.76671 * 54.65345 * 14 13 3 16 16 C 1.34780 * 120.63061 * 126.40778 * 15 14 13 17 17 O 1.21559 * 119.99665 * 185.75777 * 16 15 14 18 18 C 1.47830 * 120.00238 * 5.75308 * 16 15 14 19 19 C 1.39975 * 120.93447 * 48.99469 * 18 16 15 20 20 N 1.32132 * 118.91835 * 179.97438 * 19 18 16 21 21 C 1.31882 * 120.96938 * 0.02562 * 20 19 18 22 22 N 1.31850 * 122.09612 * 359.97438 * 21 20 19 23 23 C 1.32163 * 120.96718 * 359.74685 * 22 21 20 24 24 C 1.50708 * 120.53678 * 180.26883 * 23 22 21 25 25 C 1.52994 * 117.50072 * 13.32360 * 24 23 22 26 26 C 1.52995 * 117.49934 * 304.65868 * 24 23 22 27 27 C 1.46926 * 118.73967 * 306.38525 * 15 14 13 28 28 C 1.53036 * 109.46145 * 65.48762 * 3 2 1 29 29 H 1.09004 * 109.46961 * 182.79739 * 1 2 3 30 30 H 1.08994 * 109.46921 * 302.79610 * 1 2 3 31 31 H 1.08994 * 109.47175 * 62.80028 * 1 2 3 32 32 H 1.09000 * 109.46926 * 239.99919 * 2 1 3 33 33 H 1.08996 * 109.47008 * 120.00415 * 2 1 3 34 34 H 0.97006 * 119.99701 * 122.96104 * 4 3 2 35 35 H 0.97009 * 119.99845 * 180.02562 * 8 7 5 36 36 H 1.09003 * 109.49941 * 298.56299 * 13 3 2 37 37 H 1.08995 * 109.50151 * 58.65974 * 13 3 2 38 38 H 1.09004 * 109.60087 * 294.86646 * 14 13 3 39 39 H 1.08999 * 109.59043 * 174.43217 * 14 13 3 40 40 H 1.07999 * 120.53625 * 0.02562 * 19 18 16 41 41 H 1.08001 * 118.95326 * 179.97438 * 21 20 19 42 42 H 1.09005 * 115.54810 * 158.99576 * 24 23 22 43 43 H 1.09005 * 117.49727 * 359.97438 * 25 24 23 44 44 H 1.08997 * 117.50302 * 145.01744 * 25 24 23 45 45 H 1.08998 * 117.50366 * 214.98017 * 26 24 23 46 46 H 1.09003 * 117.49936 * 359.97438 * 26 24 23 47 47 H 1.09004 * 109.58459 * 293.82397 * 27 15 14 48 48 H 1.08996 * 109.58859 * 173.39387 * 27 15 14 49 49 H 1.08998 * 109.49939 * 301.34187 * 28 3 2 50 50 H 1.09009 * 109.49553 * 61.42972 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 1.4461 2.1701 -1.1243 5 6 1.6117 1.7083 -2.4028 6 1 2.2538 0.8608 -2.5919 7 6 0.9541 2.3293 -3.4558 8 7 1.1128 1.8851 -4.6845 9 14 -0.1562 3.7956 -3.1288 10 1 0.6387 5.0470 -3.2134 11 1 -1.2422 3.8297 -4.1411 12 1 -0.7478 3.6757 -1.7719 13 6 3.5640 1.4445 -0.1394 14 6 4.0677 2.8908 -0.1742 15 7 3.5700 3.5934 1.0164 16 6 4.4205 4.2412 1.8371 17 8 4.0123 4.7292 2.8729 18 6 5.8496 4.3582 1.4777 19 6 6.2383 4.7903 0.2043 20 7 7.5268 4.8807 -0.0741 21 6 8.4391 4.5706 0.8265 22 7 8.1170 4.1596 2.0372 23 6 6.8520 4.0453 2.4024 24 6 6.4949 3.5803 3.7908 25 6 7.6124 3.5510 4.8353 26 6 7.0700 2.2415 4.2572 27 6 2.1275 3.5767 1.2950 28 6 1.6455 2.1228 1.3129 29 1 -0.3633 -1.0265 0.0502 30 1 -0.3633 0.5566 0.8638 31 1 -0.3633 0.4697 -0.9140 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 0.9356 2.9790 -0.9632 35 1 0.6535 2.3194 -5.4203 36 1 4.0077 0.9249 0.7099 37 1 3.8455 0.9391 -1.0632 38 1 3.6971 3.3856 -1.0720 39 1 5.1577 2.8983 -0.1738 40 1 5.4971 5.0463 -0.5383 41 1 9.4832 4.6561 0.5639 42 1 5.4938 3.8443 4.1320 43 1 8.6061 3.8676 4.5182 44 1 7.3467 3.7953 5.8637 45 1 6.4477 1.6248 4.9055 46 1 7.7063 1.6967 3.5597 47 1 1.5987 4.1274 0.5169 48 1 1.9373 4.0367 2.2646 49 1 0.5613 2.1002 1.4229 50 1 2.1074 1.5966 2.1484 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001273802421.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:36:35 Heat of formation + Delta-G solvation = 59.407826 kcal Electronic energy + Delta-G solvation = -31788.690738 eV Core-core repulsion = 27817.450215 eV Total energy + Delta-G solvation = -3971.240523 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.62225 -39.94809 -38.22287 -37.43317 -35.06207 -33.61466 -32.80179 -32.41330 -30.84042 -30.37719 -29.67191 -25.98042 -25.66924 -24.73408 -23.61345 -22.81408 -22.56486 -21.76059 -21.41110 -19.97611 -18.33234 -18.16759 -17.82122 -17.24587 -16.98535 -16.11686 -15.57751 -15.28212 -14.86013 -14.53366 -14.39852 -14.30774 -14.13941 -14.00455 -13.83964 -13.47014 -13.20811 -13.05934 -12.52889 -12.36425 -12.21495 -11.92252 -11.83121 -11.76893 -11.56404 -11.52179 -11.31772 -11.03870 -10.94665 -10.75125 -10.72102 -10.55547 -10.41774 -10.26027 -10.14226 -9.86266 -9.77338 -9.52560 -9.50713 -9.45586 -8.96957 -8.49099 -7.32538 -5.83240 -3.19375 0.35455 0.75803 2.55718 2.96044 3.30428 3.32381 3.33393 3.41001 3.66319 3.81292 3.89810 4.04047 4.33524 4.52298 4.61798 4.77633 4.81185 4.87366 4.99107 5.06205 5.09444 5.17843 5.31915 5.39195 5.43190 5.50387 5.54479 5.54901 5.63272 5.78153 5.81527 5.86317 5.90180 5.96646 6.00015 6.03488 6.05452 6.06955 6.21535 6.31263 6.43653 6.50303 6.57839 6.64495 6.66550 6.80179 6.94914 7.08666 7.41853 7.78424 7.93279 8.05962 8.35981 9.13787 9.86341 10.06349 11.34793 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.013749 B = 0.003660 C = 0.003305 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2036.034654 B = 7647.548339 C = 8469.892269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.120 4.120 3 C 0.209 3.791 4 N -0.739 5.739 5 C -0.236 4.236 6 H 0.091 0.909 7 C 0.009 3.991 8 N -0.932 5.932 9 Si 0.874 3.126 10 H -0.286 1.286 11 H -0.293 1.293 12 H -0.276 1.276 13 C -0.134 4.134 14 C 0.110 3.890 15 N -0.591 5.591 16 C 0.571 3.429 17 O -0.539 6.539 18 C -0.226 4.226 19 C 0.188 3.812 20 N -0.523 5.523 21 C 0.311 3.689 22 N -0.523 5.523 23 C 0.255 3.745 24 C -0.136 4.136 25 C -0.151 4.151 26 C -0.153 4.153 27 C 0.115 3.885 28 C -0.134 4.134 29 H 0.035 0.965 30 H 0.039 0.961 31 H 0.073 0.927 32 H 0.065 0.935 33 H 0.042 0.958 34 H 0.360 0.640 35 H 0.259 0.741 36 H 0.051 0.949 37 H 0.082 0.918 38 H 0.092 0.908 39 H 0.066 0.934 40 H 0.176 0.824 41 H 0.201 0.799 42 H 0.143 0.857 43 H 0.107 0.893 44 H 0.099 0.901 45 H 0.102 0.898 46 H 0.097 0.903 47 H 0.072 0.928 48 H 0.089 0.911 49 H 0.079 0.921 50 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.521 1.763 15.876 19.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.159 4.159 3 C 0.118 3.882 4 N -0.382 5.382 5 C -0.366 4.366 6 H 0.109 0.891 7 C -0.187 4.187 8 N -0.579 5.579 9 Si 0.705 3.295 10 H -0.213 1.213 11 H -0.219 1.219 12 H -0.202 1.202 13 C -0.174 4.174 14 C -0.012 4.012 15 N -0.322 5.322 16 C 0.357 3.643 17 O -0.418 6.418 18 C -0.233 4.233 19 C 0.022 3.978 20 N -0.236 5.236 21 C 0.024 3.976 22 N -0.237 5.237 23 C 0.109 3.891 24 C -0.155 4.155 25 C -0.188 4.188 26 C -0.191 4.191 27 C -0.007 4.007 28 C -0.173 4.173 29 H 0.054 0.946 30 H 0.058 0.942 31 H 0.092 0.908 32 H 0.084 0.916 33 H 0.061 0.939 34 H 0.193 0.807 35 H 0.069 0.931 36 H 0.070 0.930 37 H 0.100 0.900 38 H 0.110 0.890 39 H 0.085 0.915 40 H 0.193 0.807 41 H 0.217 0.783 42 H 0.160 0.840 43 H 0.126 0.874 44 H 0.118 0.882 45 H 0.121 0.879 46 H 0.116 0.884 47 H 0.090 0.910 48 H 0.107 0.893 49 H 0.097 0.903 50 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 11.305 1.964 15.926 19.629 hybrid contribution -1.685 0.993 -0.104 1.959 sum 9.619 2.958 15.823 18.752 Atomic orbital electron populations 1.21651 0.96057 0.99662 1.02384 1.21818 0.96428 0.97246 1.00403 1.19490 0.90699 0.91408 0.86639 1.42839 1.63772 1.28845 1.02755 1.18918 1.23148 1.12961 0.81548 0.89095 1.24633 0.99771 0.98980 0.95310 1.69684 1.47103 1.42728 0.98407 0.86722 0.81460 0.84047 0.77305 1.21261 1.21916 1.20208 1.22292 0.98395 0.94811 1.01895 1.21925 0.97678 0.94124 0.87438 1.48086 1.07557 1.50778 1.25792 1.17777 0.84423 0.78680 0.83417 1.90730 1.77812 1.49045 1.24227 1.21494 0.96246 1.08253 0.97339 1.23593 0.93363 0.87907 0.92983 1.68481 1.01830 1.17420 1.35908 1.25152 1.00329 0.88033 0.84056 1.68188 1.19580 1.16218 1.19744 1.20790 0.87212 0.87257 0.93806 1.21349 1.01175 1.03174 0.89822 1.22969 0.98226 1.00431 0.97196 1.22979 1.03014 0.89889 1.03218 1.21639 0.78946 0.97820 1.02260 1.22186 1.01669 0.95030 0.98394 0.94585 0.94161 0.90755 0.91602 0.93943 0.80667 0.93094 0.93045 0.89968 0.88962 0.91546 0.80664 0.78289 0.83954 0.87420 0.88246 0.87945 0.88449 0.91008 0.89304 0.90259 0.91381 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.29 9.46 37.16 0.35 -1.94 16 2 C -0.12 -1.94 4.66 -26.73 -0.12 -2.07 16 3 C 0.21 3.39 0.44 -131.78 -0.06 3.33 16 4 N -0.74 -14.65 3.10 -47.20 -0.15 -14.80 16 5 C -0.24 -5.75 8.79 -15.06 -0.13 -5.88 16 6 H 0.09 2.42 7.01 -52.49 -0.37 2.05 16 7 C 0.01 0.24 5.50 -17.43 -0.10 0.15 16 8 N -0.93 -27.39 13.97 55.49 0.78 -26.62 16 9 Si 0.87 20.56 27.68 -169.99 -4.71 15.85 16 10 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 11 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 12 H -0.28 -6.09 6.60 56.52 0.37 -5.71 16 13 C -0.13 -2.06 4.75 -26.61 -0.13 -2.18 16 14 C 0.11 1.61 5.10 -3.71 -0.02 1.59 16 15 N -0.59 -8.47 2.97 -173.89 -0.52 -8.99 16 16 C 0.57 8.41 6.79 -12.34 -0.08 8.33 16 17 O -0.54 -9.03 14.43 5.31 0.08 -8.95 16 18 C -0.23 -3.04 4.81 -104.69 -0.50 -3.54 16 19 C 0.19 2.38 8.90 -16.77 -0.15 2.23 16 20 N -0.52 -6.49 10.42 -14.24 -0.15 -6.64 16 21 C 0.31 3.37 12.27 -92.03 -1.13 2.24 16 22 N -0.52 -6.24 9.54 -10.48 -0.10 -6.34 16 23 C 0.26 3.28 6.50 -81.82 -0.53 2.75 16 24 C -0.14 -1.59 5.59 -91.77 -0.51 -2.10 16 25 C -0.15 -1.40 10.04 -26.69 -0.27 -1.67 16 26 C -0.15 -1.45 10.24 -26.69 -0.27 -1.72 16 27 C 0.12 1.65 6.17 -3.71 -0.02 1.63 16 28 C -0.13 -1.89 4.76 -26.62 -0.13 -2.02 16 29 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.04 0.59 6.43 -51.93 -0.33 0.26 16 31 H 0.07 1.45 7.21 -51.93 -0.37 1.08 16 32 H 0.07 1.20 7.43 -51.93 -0.39 0.82 16 33 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.36 7.25 4.31 -40.82 -0.18 7.08 16 35 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 36 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 37 H 0.08 1.40 7.37 -51.93 -0.38 1.02 16 38 H 0.09 1.53 7.74 -51.93 -0.40 1.13 16 39 H 0.07 0.90 5.18 -51.93 -0.27 0.63 16 40 H 0.18 2.04 7.46 -52.49 -0.39 1.65 16 41 H 0.20 1.41 8.06 -52.49 -0.42 0.99 16 42 H 0.14 1.87 5.94 -51.93 -0.31 1.56 16 43 H 0.11 1.02 7.66 -51.93 -0.40 0.63 16 44 H 0.10 0.78 8.14 -51.93 -0.42 0.35 16 45 H 0.10 0.84 8.14 -51.93 -0.42 0.41 16 46 H 0.10 0.95 8.14 -51.93 -0.42 0.52 16 47 H 0.07 1.08 6.88 -51.93 -0.36 0.72 16 48 H 0.09 1.25 7.00 -51.93 -0.36 0.88 16 49 H 0.08 1.09 6.46 -51.93 -0.34 0.75 16 50 H 0.07 0.90 8.14 -51.92 -0.42 0.48 16 LS Contribution 385.13 15.07 5.80 5.80 Total: -1.00 -29.59 385.13 -10.16 -39.74 By element: Atomic # 1 Polarization: 19.18 SS G_CDS: -7.39 Total: 11.79 kcal Atomic # 6 Polarization: 2.94 SS G_CDS: -3.81 Total: -0.86 kcal Atomic # 7 Polarization: -63.24 SS G_CDS: -0.14 Total: -63.38 kcal Atomic # 8 Polarization: -9.03 SS G_CDS: 0.08 Total: -8.95 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -4.71 Total: 15.85 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -29.59 -10.16 -39.74 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001273802421.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.152 kcal (2) G-P(sol) polarization free energy of solvation -29.587 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.565 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.744 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds