Wall clock time and date at job start Wed Apr 1 2020 03:36:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53002 * 109.46883 * 2 1 4 4 N 1.46495 * 109.45849 * 305.51277 * 3 2 1 5 5 C 1.36934 * 120.00552 * 302.96160 * 4 3 2 6 6 H 1.08002 * 120.00070 * 354.39637 * 5 4 3 7 7 C 1.38809 * 120.00531 * 174.39218 * 5 4 3 8 8 N 1.31614 * 120.00265 * 180.02562 * 7 5 4 9 9 Si 1.86803 * 119.99655 * 0.02562 * 7 5 4 10 10 H 1.48496 * 109.47240 * 90.00101 * 9 7 5 11 11 H 1.48506 * 109.47163 * 209.99708 * 9 7 5 12 12 H 1.48503 * 109.47188 * 329.99991 * 9 7 5 13 13 C 1.53038 * 109.45791 * 185.54452 * 3 2 1 14 14 C 1.53187 * 109.31219 * 178.60189 * 13 3 2 15 15 N 1.46924 * 108.76671 * 54.65345 * 14 13 3 16 16 C 1.34780 * 120.63061 * 126.40778 * 15 14 13 17 17 O 1.21559 * 119.99665 * 185.75777 * 16 15 14 18 18 C 1.47830 * 120.00238 * 5.75308 * 16 15 14 19 19 C 1.39975 * 120.93447 * 48.99469 * 18 16 15 20 20 N 1.32132 * 118.91835 * 179.97438 * 19 18 16 21 21 C 1.31882 * 120.96938 * 0.02562 * 20 19 18 22 22 N 1.31850 * 122.09612 * 359.97438 * 21 20 19 23 23 C 1.32163 * 120.96718 * 359.74685 * 22 21 20 24 24 C 1.50708 * 120.53678 * 180.26883 * 23 22 21 25 25 C 1.52994 * 117.50072 * 13.32360 * 24 23 22 26 26 C 1.52995 * 117.49934 * 304.65868 * 24 23 22 27 27 C 1.46926 * 118.73967 * 306.38525 * 15 14 13 28 28 C 1.53036 * 109.46145 * 65.48762 * 3 2 1 29 29 H 1.09004 * 109.46961 * 182.79739 * 1 2 3 30 30 H 1.08994 * 109.46921 * 302.79610 * 1 2 3 31 31 H 1.08994 * 109.47175 * 62.80028 * 1 2 3 32 32 H 1.09000 * 109.46926 * 239.99919 * 2 1 3 33 33 H 1.08996 * 109.47008 * 120.00415 * 2 1 3 34 34 H 0.97006 * 119.99701 * 122.96104 * 4 3 2 35 35 H 0.97009 * 119.99845 * 180.02562 * 8 7 5 36 36 H 1.09003 * 109.49941 * 298.56299 * 13 3 2 37 37 H 1.08995 * 109.50151 * 58.65974 * 13 3 2 38 38 H 1.09004 * 109.60087 * 294.86646 * 14 13 3 39 39 H 1.08999 * 109.59043 * 174.43217 * 14 13 3 40 40 H 1.07999 * 120.53625 * 0.02562 * 19 18 16 41 41 H 1.08001 * 118.95326 * 179.97438 * 21 20 19 42 42 H 1.09005 * 115.54810 * 158.99576 * 24 23 22 43 43 H 1.09005 * 117.49727 * 359.97438 * 25 24 23 44 44 H 1.08997 * 117.50302 * 145.01744 * 25 24 23 45 45 H 1.08998 * 117.50366 * 214.98017 * 26 24 23 46 46 H 1.09003 * 117.49936 * 359.97438 * 26 24 23 47 47 H 1.09004 * 109.58459 * 293.82397 * 27 15 14 48 48 H 1.08996 * 109.58859 * 173.39387 * 27 15 14 49 49 H 1.08998 * 109.49939 * 301.34187 * 28 3 2 50 50 H 1.09009 * 109.49553 * 61.42972 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 1.4461 2.1701 -1.1243 5 6 1.6117 1.7083 -2.4028 6 1 2.2538 0.8608 -2.5919 7 6 0.9541 2.3293 -3.4558 8 7 1.1128 1.8851 -4.6845 9 14 -0.1562 3.7956 -3.1288 10 1 0.6387 5.0470 -3.2134 11 1 -1.2422 3.8297 -4.1411 12 1 -0.7478 3.6757 -1.7719 13 6 3.5640 1.4445 -0.1394 14 6 4.0677 2.8908 -0.1742 15 7 3.5700 3.5934 1.0164 16 6 4.4205 4.2412 1.8371 17 8 4.0123 4.7292 2.8729 18 6 5.8496 4.3582 1.4777 19 6 6.2383 4.7903 0.2043 20 7 7.5268 4.8807 -0.0741 21 6 8.4391 4.5706 0.8265 22 7 8.1170 4.1596 2.0372 23 6 6.8520 4.0453 2.4024 24 6 6.4949 3.5803 3.7908 25 6 7.6124 3.5510 4.8353 26 6 7.0700 2.2415 4.2572 27 6 2.1275 3.5767 1.2950 28 6 1.6455 2.1228 1.3129 29 1 -0.3633 -1.0265 0.0502 30 1 -0.3633 0.5566 0.8638 31 1 -0.3633 0.4697 -0.9140 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 0.9356 2.9790 -0.9632 35 1 0.6535 2.3194 -5.4203 36 1 4.0077 0.9249 0.7099 37 1 3.8455 0.9391 -1.0632 38 1 3.6971 3.3856 -1.0720 39 1 5.1577 2.8983 -0.1738 40 1 5.4971 5.0463 -0.5383 41 1 9.4832 4.6561 0.5639 42 1 5.4938 3.8443 4.1320 43 1 8.6061 3.8676 4.5182 44 1 7.3467 3.7953 5.8637 45 1 6.4477 1.6248 4.9055 46 1 7.7063 1.6967 3.5597 47 1 1.5987 4.1274 0.5169 48 1 1.9373 4.0367 2.2646 49 1 0.5613 2.1002 1.4229 50 1 2.1074 1.5966 2.1484 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001273802421.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:36:34 Heat of formation + Delta-G solvation = 43.529617 kcal Electronic energy + Delta-G solvation = -31789.379268 eV Core-core repulsion = 27817.450215 eV Total energy + Delta-G solvation = -3971.929054 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.59751 -41.12435 -39.50129 -38.26399 -36.38734 -34.63179 -34.38583 -33.56722 -32.20292 -31.83154 -31.11193 -27.12586 -26.59236 -25.89661 -25.31521 -24.11064 -23.29074 -22.99380 -22.29498 -21.17573 -19.71902 -19.67310 -19.11686 -18.33194 -17.96492 -17.28869 -16.46381 -16.38592 -16.32102 -16.07290 -15.59188 -15.45452 -15.31391 -15.12922 -14.90126 -14.72423 -14.59188 -14.45234 -14.22073 -13.63437 -13.26570 -13.11216 -12.92584 -12.89011 -12.83878 -12.65400 -12.59445 -12.34290 -12.33040 -12.17009 -11.98366 -11.80896 -11.63208 -11.59076 -11.51362 -11.29431 -11.03538 -10.93370 -10.78216 -10.44587 -10.42967 -9.74168 -9.15193 -7.90380 -5.21180 -0.58986 -0.19017 1.41300 1.42642 1.43903 1.50150 1.83061 2.44371 2.55917 2.79547 2.97455 3.03137 3.15312 3.26392 3.41688 3.57510 3.72854 3.83897 3.88290 3.93764 3.99800 4.07892 4.09018 4.17612 4.29362 4.34798 4.51131 4.55593 4.62896 4.64245 4.72270 4.74164 4.77369 4.80757 4.90321 5.00510 5.06290 5.09619 5.15324 5.19624 5.23642 5.25997 5.26744 5.32471 5.51573 5.61447 5.68941 5.72731 5.94807 6.24926 6.34010 6.87150 6.91252 7.21010 7.97203 8.15508 9.31412 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.013749 B = 0.003660 C = 0.003305 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2036.034654 B = 7647.548339 C = 8469.892269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.117 4.117 3 C 0.202 3.798 4 N -0.736 5.736 5 C -0.190 4.190 6 H 0.063 0.937 7 C -0.060 4.060 8 N -0.987 5.987 9 Si 0.932 3.068 10 H -0.286 1.286 11 H -0.310 1.310 12 H -0.250 1.250 13 C -0.129 4.129 14 C 0.121 3.879 15 N -0.588 5.588 16 C 0.576 3.424 17 O -0.560 6.560 18 C -0.244 4.244 19 C 0.187 3.813 20 N -0.537 5.537 21 C 0.315 3.685 22 N -0.527 5.527 23 C 0.253 3.747 24 C -0.159 4.159 25 C -0.138 4.138 26 C -0.141 4.141 27 C 0.114 3.886 28 C -0.124 4.124 29 H 0.048 0.952 30 H 0.061 0.939 31 H 0.036 0.964 32 H 0.037 0.963 33 H 0.072 0.928 34 H 0.362 0.638 35 H 0.251 0.749 36 H 0.072 0.928 37 H 0.059 0.941 38 H 0.070 0.930 39 H 0.078 0.922 40 H 0.179 0.821 41 H 0.237 0.763 42 H 0.127 0.873 43 H 0.106 0.894 44 H 0.116 0.884 45 H 0.117 0.883 46 H 0.095 0.905 47 H 0.064 0.936 48 H 0.095 0.905 49 H 0.089 0.911 50 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.387 1.886 18.965 22.201 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.156 4.156 3 C 0.112 3.888 4 N -0.379 5.379 5 C -0.322 4.322 6 H 0.081 0.919 7 C -0.251 4.251 8 N -0.639 5.639 9 Si 0.762 3.238 10 H -0.212 1.212 11 H -0.238 1.238 12 H -0.174 1.174 13 C -0.169 4.169 14 C -0.001 4.001 15 N -0.319 5.319 16 C 0.364 3.636 17 O -0.440 6.440 18 C -0.251 4.251 19 C 0.020 3.980 20 N -0.251 5.251 21 C 0.029 3.971 22 N -0.241 5.241 23 C 0.107 3.893 24 C -0.178 4.178 25 C -0.175 4.175 26 C -0.179 4.179 27 C -0.008 4.008 28 C -0.163 4.163 29 H 0.067 0.933 30 H 0.080 0.920 31 H 0.056 0.944 32 H 0.055 0.945 33 H 0.090 0.910 34 H 0.196 0.804 35 H 0.060 0.940 36 H 0.090 0.910 37 H 0.078 0.922 38 H 0.088 0.912 39 H 0.096 0.904 40 H 0.196 0.804 41 H 0.252 0.748 42 H 0.145 0.855 43 H 0.125 0.875 44 H 0.134 0.866 45 H 0.136 0.864 46 H 0.114 0.886 47 H 0.082 0.918 48 H 0.114 0.886 49 H 0.107 0.893 50 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 12.184 2.085 19.089 22.742 hybrid contribution -1.816 0.883 -0.966 2.238 sum 10.368 2.968 18.124 21.090 Atomic orbital electron populations 1.21594 0.95889 1.00490 1.01381 1.21788 0.96513 0.96882 1.00466 1.19765 0.90937 0.91485 0.86590 1.42822 1.63751 1.29157 1.02170 1.18792 1.19829 1.10341 0.83202 0.91914 1.25238 1.02440 1.02237 0.95184 1.69855 1.49570 1.44997 0.99462 0.85753 0.79324 0.80960 0.77804 1.21250 1.23781 1.17432 1.22209 0.97747 0.95307 1.01644 1.21730 0.98330 0.93321 0.86768 1.48047 1.07671 1.50705 1.25503 1.17893 0.84859 0.77973 0.82916 1.90715 1.78318 1.49843 1.25114 1.21417 0.95645 1.10094 0.97968 1.23677 0.93829 0.87605 0.92860 1.68551 1.01828 1.18175 1.36528 1.25918 1.01590 0.86223 0.83380 1.68289 1.18981 1.16641 1.20167 1.21049 0.87430 0.86650 0.94211 1.21310 1.01238 1.05304 0.89924 1.23050 0.97232 0.99885 0.97327 1.23053 1.02531 0.89453 1.02878 1.21660 0.78796 0.97991 1.02332 1.22117 1.02447 0.94596 0.97092 0.93331 0.91984 0.94437 0.94451 0.90953 0.80449 0.94004 0.90971 0.92193 0.91177 0.90353 0.80396 0.74752 0.85517 0.87545 0.86602 0.86434 0.88648 0.91804 0.88625 0.89275 0.89518 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.19 9.46 71.98 0.68 -3.51 16 2 C -0.12 -3.60 4.66 30.60 0.14 -3.46 16 3 C 0.20 6.22 0.44 3.63 0.00 6.22 16 4 N -0.74 -28.69 3.10 -303.24 -0.94 -29.63 16 5 C -0.19 -9.45 8.79 84.03 0.74 -8.71 16 6 H 0.06 3.47 7.01 -2.91 -0.02 3.45 16 7 C -0.06 -3.29 5.50 84.86 0.47 -2.82 16 8 N -0.99 -60.45 13.97 21.65 0.30 -60.15 16 9 Si 0.93 43.10 27.68 68.60 1.90 45.00 16 10 H -0.29 -13.08 7.11 99.48 0.71 -12.37 16 11 H -0.31 -15.18 7.11 99.48 0.71 -14.47 16 12 H -0.25 -10.30 6.60 99.48 0.66 -9.64 16 13 C -0.13 -3.81 4.75 30.67 0.15 -3.67 16 14 C 0.12 3.43 5.10 86.36 0.44 3.87 16 15 N -0.59 -15.99 2.97 -822.34 -2.44 -18.44 16 16 C 0.58 16.27 6.79 86.78 0.59 16.86 16 17 O -0.56 -18.07 14.43 -3.90 -0.06 -18.12 16 18 C -0.24 -6.29 4.81 -19.91 -0.10 -6.38 16 19 C 0.19 4.57 8.90 85.07 0.76 5.33 16 20 N -0.54 -12.58 10.42 -198.97 -2.07 -14.65 16 21 C 0.31 6.16 12.27 180.84 2.22 8.37 16 22 N -0.53 -11.52 9.54 -187.06 -1.78 -13.30 16 23 C 0.25 6.11 6.50 42.92 0.28 6.39 16 24 C -0.16 -3.42 5.59 -11.54 -0.06 -3.48 16 25 C -0.14 -2.23 10.04 30.62 0.31 -1.92 16 26 C -0.14 -2.32 10.24 30.62 0.31 -2.01 16 27 C 0.11 3.02 6.17 86.36 0.53 3.55 16 28 C -0.12 -3.11 4.76 30.67 0.15 -2.97 16 29 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 30 H 0.06 1.62 6.43 -2.39 -0.02 1.61 16 31 H 0.04 1.42 7.21 -2.39 -0.02 1.40 16 32 H 0.04 1.35 7.43 -2.39 -0.02 1.34 16 33 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 34 H 0.36 14.05 4.31 -92.70 -0.40 13.65 16 35 H 0.25 15.01 8.31 -92.70 -0.77 14.24 16 36 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 37 H 0.06 2.05 7.37 -2.39 -0.02 2.04 16 38 H 0.07 2.32 7.74 -2.38 -0.02 2.30 16 39 H 0.08 2.05 5.18 -2.39 -0.01 2.03 16 40 H 0.18 4.10 7.46 -2.91 -0.02 4.08 16 41 H 0.24 2.60 8.06 -2.91 -0.02 2.58 16 42 H 0.13 3.17 5.94 -2.38 -0.01 3.15 16 43 H 0.11 1.77 7.66 -2.38 -0.02 1.75 16 44 H 0.12 1.48 8.14 -2.39 -0.02 1.46 16 45 H 0.12 1.56 8.14 -2.39 -0.02 1.54 16 46 H 0.10 1.62 8.14 -2.39 -0.02 1.60 16 47 H 0.06 1.80 6.88 -2.38 -0.02 1.78 16 48 H 0.10 2.46 7.00 -2.39 -0.02 2.44 16 49 H 0.09 2.11 6.46 -2.39 -0.02 2.09 16 50 H 0.09 1.92 8.14 -2.38 -0.02 1.90 16 Total: -1.00 -65.74 385.13 3.02 -62.71 By element: Atomic # 1 Polarization: 34.40 SS G_CDS: 0.52 Total: 34.92 kcal Atomic # 6 Polarization: 4.06 SS G_CDS: 7.60 Total: 11.66 kcal Atomic # 7 Polarization: -129.23 SS G_CDS: -6.94 Total: -136.17 kcal Atomic # 8 Polarization: -18.07 SS G_CDS: -0.06 Total: -18.12 kcal Atomic # 14 Polarization: 43.10 SS G_CDS: 1.90 Total: 45.00 kcal Total: -65.74 3.02 -62.71 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001273802421.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.244 kcal (2) G-P(sol) polarization free energy of solvation -65.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.507 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.714 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds