Wall clock time and date at job start Wed Apr 1 2020 04:00:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53005 * 109.47223 * 2 1 4 4 C 1.52999 * 109.46945 * 179.97438 * 3 2 1 5 5 C 1.53004 * 109.46989 * 179.97438 * 4 3 2 6 6 H 1.09000 * 109.46662 * 55.00238 * 5 4 3 7 7 C 1.52996 * 109.47336 * 174.99994 * 5 4 3 8 8 N 1.46498 * 109.47059 * 175.00083 * 7 5 4 9 9 C 1.36943 * 119.99752 * 179.72430 * 8 7 5 10 10 H 1.08002 * 119.99793 * 0.27665 * 9 8 7 11 11 C 1.38811 * 120.00012 * 180.27737 * 9 8 7 12 12 N 1.31611 * 120.00081 * 180.02562 * 11 9 8 13 13 Si 1.86800 * 119.99814 * 0.02562 * 11 9 8 14 14 H 1.48501 * 109.47483 * 90.00178 * 13 11 9 15 15 H 1.48498 * 109.47011 * 210.00042 * 13 11 9 16 16 H 1.48502 * 109.47495 * 329.99664 * 13 11 9 17 17 N 1.46494 * 109.47171 * 295.00630 * 5 4 3 18 18 C 1.34779 * 120.00531 * 84.99693 * 17 5 4 19 19 O 1.21587 * 119.99641 * 0.02562 * 18 17 5 20 20 C 1.47589 * 120.00354 * 179.97438 * 18 17 5 21 21 C 1.36570 * 125.91876 * 179.97438 * 20 18 17 22 22 N 1.36202 * 107.09587 * 180.02562 * 21 20 18 23 23 C 1.36668 * 132.29836 * 179.97438 * 22 21 20 24 24 C 1.34849 * 120.64092 * 180.02562 * 23 22 21 25 25 C 1.40573 * 120.34557 * 359.97153 * 24 23 22 26 26 C 1.50695 * 120.13797 * 180.02562 * 25 24 23 27 27 C 1.35894 * 119.72577 * 0.02562 * 25 24 23 28 28 C 1.37273 * 107.33638 * 359.97438 * 22 21 20 29 29 N 1.32234 * 108.37869 * 359.73173 * 28 22 21 30 30 H 1.08995 * 109.47660 * 59.99809 * 1 2 3 31 31 H 1.09004 * 109.47196 * 180.02562 * 1 2 3 32 32 H 1.09010 * 109.47267 * 299.99850 * 1 2 3 33 33 H 1.09001 * 109.47387 * 239.99934 * 2 1 3 34 34 H 1.09002 * 109.47480 * 119.99855 * 2 1 3 35 35 H 1.08997 * 109.46805 * 60.00149 * 3 2 1 36 36 H 1.08995 * 109.46632 * 299.99912 * 3 2 1 37 37 H 1.08997 * 109.47199 * 60.00449 * 4 3 2 38 38 H 1.08995 * 109.47432 * 299.99480 * 4 3 2 39 39 H 1.09004 * 109.47066 * 55.00351 * 7 5 4 40 40 H 1.08994 * 109.46974 * 295.00498 * 7 5 4 41 41 H 0.97001 * 120.00384 * 0.02562 * 8 7 5 42 42 H 0.97008 * 120.00329 * 179.97438 * 12 11 9 43 43 H 0.97009 * 119.99912 * 264.99313 * 17 5 4 44 44 H 1.07993 * 126.45564 * 0.04459 * 21 20 18 45 45 H 1.07999 * 119.68291 * 0.02562 * 23 22 21 46 46 H 1.08007 * 119.83197 * 179.97438 * 24 23 22 47 47 H 1.09005 * 109.47164 * 269.97577 * 26 25 24 48 48 H 1.09000 * 109.47564 * 29.97123 * 26 25 24 49 49 H 1.09002 * 109.47635 * 149.97653 * 26 25 24 50 50 H 1.08001 * 120.32648 * 180.02562 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 6 4.0800 2.8850 0.0000 6 1 3.6450 3.4245 0.8414 7 6 5.6048 2.8869 0.1264 8 7 6.1030 4.2593 0.0060 9 6 7.4464 4.5101 0.0937 10 1 8.1389 3.6957 0.2472 11 6 7.9180 5.8112 -0.0145 12 7 9.2092 6.0522 0.0693 13 14 6.7201 7.2199 -0.2792 14 1 6.2831 7.7520 1.0365 15 1 7.3871 8.2981 -1.0523 16 1 5.5379 6.7296 -1.0324 17 7 3.6929 3.5393 -1.2522 18 6 2.4756 4.1061 -1.3682 19 8 1.6989 4.0749 -0.4333 20 6 2.0859 4.7658 -2.6297 21 6 0.8893 5.3752 -2.8786 22 7 0.9400 5.8510 -4.1538 23 6 0.0358 6.5352 -4.9168 24 6 0.3377 6.8984 -6.1799 25 6 1.5906 6.5778 -6.7309 26 6 1.9233 6.9864 -8.1427 27 6 2.5006 5.8978 -5.9850 28 6 2.1716 5.5235 -4.6640 29 7 2.8503 4.8764 -3.7317 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3634 0.5139 0.8901 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 1.6767 1.9563 0.8900 36 1 1.6766 1.9563 -0.8900 37 1 3.9337 0.9286 -0.8891 38 1 3.9329 0.9289 0.8908 39 1 6.0357 2.2733 -0.6648 40 1 5.8894 2.4808 1.0970 41 1 5.4810 4.9908 -0.1315 42 1 9.5388 6.9614 -0.0068 43 1 4.3127 3.5646 -1.9981 44 1 0.0593 5.4634 -2.1934 45 1 -0.9298 6.7876 -4.5042 46 1 -0.3868 7.4384 -6.7715 47 1 1.6236 6.1952 -8.8301 48 1 1.3901 7.9042 -8.3906 49 1 2.9967 7.1552 -8.2288 50 1 3.4663 5.6468 -6.3985 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001276255293.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:00:36 Heat of formation + Delta-G solvation = 48.361698 kcal Electronic energy + Delta-G solvation = -30116.655629 eV Core-core repulsion = 26144.936110 eV Total energy + Delta-G solvation = -3971.719519 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -43.03769 -39.71972 -37.92829 -36.50044 -34.96540 -34.51101 -33.49682 -31.54913 -30.95892 -30.52670 -30.07950 -27.62927 -27.18049 -24.54777 -23.99512 -23.03322 -21.99473 -21.89690 -20.71282 -20.62459 -19.93999 -18.35381 -17.70963 -17.05903 -16.62515 -16.28873 -16.03947 -15.30295 -15.23653 -14.82695 -14.74481 -14.42236 -14.26278 -14.04483 -13.85801 -13.68278 -13.39178 -13.01009 -12.92291 -12.72320 -12.68898 -12.45127 -12.12113 -12.02033 -11.97829 -11.80747 -11.38270 -11.30034 -10.96646 -10.93786 -10.85987 -10.80266 -10.45561 -10.31366 -10.25951 -10.04689 -9.83389 -9.55719 -9.10490 -8.87848 -8.64695 -8.08014 -7.20138 -5.73270 -3.08517 0.36862 0.94764 2.00956 2.24344 3.10310 3.40948 3.43252 3.49201 3.50487 3.64429 3.83808 4.13713 4.37566 4.42886 4.64409 4.71991 4.79686 4.87361 5.06053 5.07552 5.15633 5.18864 5.20550 5.25231 5.35869 5.38089 5.44112 5.50855 5.56415 5.57469 5.70794 5.78100 5.82309 5.89183 5.94482 5.95033 6.02709 6.11998 6.14351 6.20612 6.22750 6.25948 6.45185 6.48092 6.62576 6.67758 6.72193 6.91462 7.47307 7.89568 8.02534 8.44621 8.46782 9.24943 9.97631 10.17055 11.45030 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.006467 B = 0.004230 C = 0.002774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4328.343788 B = 6617.759710 C =10090.729727 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.125 4.125 3 C -0.113 4.113 4 C -0.126 4.126 5 C 0.133 3.867 6 H 0.089 0.911 7 C 0.149 3.851 8 N -0.755 5.755 9 C -0.243 4.243 10 H 0.091 0.909 11 C 0.008 3.992 12 N -0.934 5.934 13 Si 0.880 3.120 14 H -0.285 1.285 15 H -0.291 1.291 16 H -0.276 1.276 17 N -0.694 5.694 18 C 0.598 3.402 19 O -0.539 6.539 20 C 0.012 3.988 21 C -0.023 4.023 22 N -0.368 5.368 23 C 0.057 3.943 24 C -0.135 4.135 25 C -0.074 4.074 26 C -0.111 4.111 27 C -0.077 4.077 28 C 0.229 3.771 29 N -0.458 5.458 30 H 0.050 0.950 31 H 0.048 0.952 32 H 0.053 0.947 33 H 0.055 0.945 34 H 0.058 0.942 35 H 0.066 0.934 36 H 0.063 0.937 37 H 0.064 0.936 38 H 0.073 0.927 39 H 0.033 0.967 40 H 0.043 0.957 41 H 0.363 0.637 42 H 0.259 0.741 43 H 0.413 0.587 44 H 0.195 0.805 45 H 0.166 0.834 46 H 0.151 0.849 47 H 0.076 0.924 48 H 0.071 0.929 49 H 0.073 0.927 50 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.283 -3.260 -14.253 27.494 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.163 4.163 3 C -0.150 4.150 4 C -0.165 4.165 5 C 0.029 3.971 6 H 0.107 0.893 7 C 0.022 3.978 8 N -0.401 5.401 9 C -0.373 4.373 10 H 0.109 0.891 11 C -0.188 4.188 12 N -0.582 5.582 13 Si 0.710 3.290 14 H -0.212 1.212 15 H -0.218 1.218 16 H -0.202 1.202 17 N -0.344 5.344 18 C 0.383 3.617 19 O -0.416 6.416 20 C -0.121 4.121 21 C -0.158 4.158 22 N -0.040 5.040 23 C -0.063 4.063 24 C -0.156 4.156 25 C -0.080 4.080 26 C -0.168 4.168 27 C -0.097 4.097 28 C -0.017 4.017 29 N -0.179 5.179 30 H 0.069 0.931 31 H 0.067 0.933 32 H 0.072 0.928 33 H 0.074 0.926 34 H 0.077 0.923 35 H 0.085 0.915 36 H 0.081 0.919 37 H 0.083 0.917 38 H 0.092 0.908 39 H 0.051 0.949 40 H 0.061 0.939 41 H 0.196 0.804 42 H 0.069 0.931 43 H 0.249 0.751 44 H 0.212 0.788 45 H 0.183 0.817 46 H 0.169 0.831 47 H 0.095 0.905 48 H 0.090 0.910 49 H 0.092 0.908 50 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -22.780 -3.659 -13.533 26.748 hybrid contribution -1.259 1.555 -0.430 2.047 sum -24.039 -2.103 -13.963 27.879 Atomic orbital electron populations 1.21739 0.96330 1.00821 1.01766 1.21569 0.95558 0.97718 1.01435 1.21673 0.94789 0.95413 1.03145 1.21972 0.96091 0.95972 1.02496 1.21438 0.96235 0.92890 0.86570 0.89280 1.20945 0.88924 0.88354 0.99612 1.42702 1.05432 1.02634 1.89298 1.19047 0.82106 0.94178 1.41976 0.89092 1.24617 0.95446 0.96861 1.01849 1.69697 1.11437 1.19858 1.57177 0.86606 0.81085 0.83325 0.77970 1.21162 1.21769 1.20177 1.45858 1.15603 1.55577 1.17409 1.16826 0.82335 0.77824 0.84703 1.90782 1.51863 1.60224 1.38769 1.20754 0.92102 1.04251 0.95013 1.22569 1.02355 1.05403 0.85484 1.42774 1.13699 1.36143 1.11364 1.21630 0.95032 0.97358 0.92329 1.20745 0.97957 1.02793 0.94119 1.19751 0.93279 0.97622 0.97304 1.20771 1.02943 1.01799 0.91241 1.20207 1.01315 0.99275 0.88868 1.20946 0.82660 1.01796 0.96279 1.70898 1.29105 1.18611 0.99318 0.93072 0.93324 0.92807 0.92576 0.92334 0.91483 0.91862 0.91715 0.90827 0.94884 0.93892 0.80375 0.93102 0.75057 0.78818 0.81713 0.83098 0.90541 0.91006 0.90765 0.82880 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.57 9.91 37.15 0.37 -1.20 16 2 C -0.13 -1.43 5.93 -26.73 -0.16 -1.58 16 3 C -0.11 -1.53 3.82 -26.73 -0.10 -1.64 16 4 C -0.13 -1.73 4.89 -26.73 -0.13 -1.87 16 5 C 0.13 2.23 2.41 -67.93 -0.16 2.06 16 6 H 0.09 1.61 7.58 -51.93 -0.39 1.22 16 7 C 0.15 2.90 5.82 -4.04 -0.02 2.88 16 8 N -0.75 -18.46 5.24 -59.91 -0.31 -18.78 16 9 C -0.24 -7.04 10.47 -15.06 -0.16 -7.19 16 10 H 0.09 2.78 8.06 -52.49 -0.42 2.35 16 11 C 0.01 0.24 5.50 -17.43 -0.10 0.15 16 12 N -0.93 -29.93 13.97 55.49 0.78 -29.16 16 13 Si 0.88 23.35 27.74 -169.99 -4.71 18.64 16 14 H -0.28 -7.54 7.11 56.52 0.40 -7.14 16 15 H -0.29 -7.76 7.11 56.52 0.40 -7.36 16 16 H -0.28 -7.14 6.52 56.52 0.37 -6.78 16 17 N -0.69 -11.98 4.47 -54.83 -0.24 -12.23 16 18 C 0.60 10.40 6.39 -12.44 -0.08 10.32 16 19 O -0.54 -9.84 14.01 5.29 0.07 -9.77 16 20 C 0.01 0.20 6.94 -83.45 -0.58 -0.38 16 21 C -0.02 -0.31 11.47 -16.21 -0.19 -0.49 16 22 N -0.37 -4.38 2.93 -62.38 -0.18 -4.56 16 23 C 0.06 0.45 10.93 -16.60 -0.18 0.27 16 24 C -0.14 -0.89 9.67 -39.90 -0.39 -1.27 16 25 C -0.07 -0.58 5.88 -104.59 -0.62 -1.19 16 26 C -0.11 -0.55 10.02 36.00 0.36 -0.19 16 27 C -0.08 -0.82 9.75 -39.30 -0.38 -1.20 16 28 C 0.23 3.19 7.79 -156.04 -1.22 1.97 16 29 N -0.46 -7.65 11.01 -9.35 -0.10 -7.76 16 30 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.05 0.57 8.14 -51.92 -0.42 0.14 16 33 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.07 0.99 7.85 -51.93 -0.41 0.58 16 36 H 0.06 0.96 5.64 -51.93 -0.29 0.67 16 37 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 38 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 39 H 0.03 0.64 8.14 -51.93 -0.42 0.21 16 40 H 0.04 0.83 8.14 -51.93 -0.42 0.40 16 41 H 0.36 9.03 5.20 -40.82 -0.21 8.81 16 42 H 0.26 7.92 8.31 -40.82 -0.34 7.58 16 43 H 0.41 7.38 8.30 -40.82 -0.34 7.04 16 44 H 0.19 2.05 8.06 -52.49 -0.42 1.63 16 45 H 0.17 0.72 8.06 -52.49 -0.42 0.30 16 46 H 0.15 0.48 8.06 -52.48 -0.42 0.06 16 47 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 48 H 0.07 0.26 8.10 -51.93 -0.42 -0.16 16 49 H 0.07 0.36 8.08 -51.93 -0.42 -0.06 16 50 H 0.15 1.46 8.06 -52.49 -0.42 1.04 16 LS Contribution 408.45 15.07 6.16 6.16 Total: -1.00 -35.81 408.45 -10.28 -46.09 By element: Atomic # 1 Polarization: 19.92 SS G_CDS: -8.00 Total: 11.92 kcal Atomic # 6 Polarization: 3.18 SS G_CDS: -3.73 Total: -0.55 kcal Atomic # 7 Polarization: -72.41 SS G_CDS: -0.07 Total: -72.48 kcal Atomic # 8 Polarization: -9.84 SS G_CDS: 0.07 Total: -9.77 kcal Atomic # 14 Polarization: 23.35 SS G_CDS: -4.71 Total: 18.64 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -35.81 -10.28 -46.09 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001276255293.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.452 kcal (2) G-P(sol) polarization free energy of solvation -35.810 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.642 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.090 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.362 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds