Wall clock time and date at job start Wed Apr 1 2020 04:00:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53005 * 109.47223 * 2 1 4 4 C 1.52999 * 109.46945 * 179.97438 * 3 2 1 5 5 C 1.53004 * 109.46989 * 179.97438 * 4 3 2 6 6 H 1.09000 * 109.46662 * 55.00238 * 5 4 3 7 7 C 1.52996 * 109.47336 * 174.99994 * 5 4 3 8 8 N 1.46498 * 109.47059 * 175.00083 * 7 5 4 9 9 C 1.36943 * 119.99752 * 179.72430 * 8 7 5 10 10 H 1.08002 * 119.99793 * 0.27665 * 9 8 7 11 11 C 1.38811 * 120.00012 * 180.27737 * 9 8 7 12 12 N 1.31611 * 120.00081 * 180.02562 * 11 9 8 13 13 Si 1.86800 * 119.99814 * 0.02562 * 11 9 8 14 14 H 1.48501 * 109.47483 * 90.00178 * 13 11 9 15 15 H 1.48498 * 109.47011 * 210.00042 * 13 11 9 16 16 H 1.48502 * 109.47495 * 329.99664 * 13 11 9 17 17 N 1.46494 * 109.47171 * 295.00630 * 5 4 3 18 18 C 1.34779 * 120.00531 * 84.99693 * 17 5 4 19 19 O 1.21587 * 119.99641 * 0.02562 * 18 17 5 20 20 C 1.47589 * 120.00354 * 179.97438 * 18 17 5 21 21 C 1.36570 * 125.91876 * 179.97438 * 20 18 17 22 22 N 1.36202 * 107.09587 * 180.02562 * 21 20 18 23 23 C 1.36668 * 132.29836 * 179.97438 * 22 21 20 24 24 C 1.34849 * 120.64092 * 180.02562 * 23 22 21 25 25 C 1.40573 * 120.34557 * 359.97153 * 24 23 22 26 26 C 1.50695 * 120.13797 * 180.02562 * 25 24 23 27 27 C 1.35894 * 119.72577 * 0.02562 * 25 24 23 28 28 C 1.37273 * 107.33638 * 359.97438 * 22 21 20 29 29 N 1.32234 * 108.37869 * 359.73173 * 28 22 21 30 30 H 1.08995 * 109.47660 * 59.99809 * 1 2 3 31 31 H 1.09004 * 109.47196 * 180.02562 * 1 2 3 32 32 H 1.09010 * 109.47267 * 299.99850 * 1 2 3 33 33 H 1.09001 * 109.47387 * 239.99934 * 2 1 3 34 34 H 1.09002 * 109.47480 * 119.99855 * 2 1 3 35 35 H 1.08997 * 109.46805 * 60.00149 * 3 2 1 36 36 H 1.08995 * 109.46632 * 299.99912 * 3 2 1 37 37 H 1.08997 * 109.47199 * 60.00449 * 4 3 2 38 38 H 1.08995 * 109.47432 * 299.99480 * 4 3 2 39 39 H 1.09004 * 109.47066 * 55.00351 * 7 5 4 40 40 H 1.08994 * 109.46974 * 295.00498 * 7 5 4 41 41 H 0.97001 * 120.00384 * 0.02562 * 8 7 5 42 42 H 0.97008 * 120.00329 * 179.97438 * 12 11 9 43 43 H 0.97009 * 119.99912 * 264.99313 * 17 5 4 44 44 H 1.07993 * 126.45564 * 0.04459 * 21 20 18 45 45 H 1.07999 * 119.68291 * 0.02562 * 23 22 21 46 46 H 1.08007 * 119.83197 * 179.97438 * 24 23 22 47 47 H 1.09005 * 109.47164 * 269.97577 * 26 25 24 48 48 H 1.09000 * 109.47564 * 29.97123 * 26 25 24 49 49 H 1.09002 * 109.47635 * 149.97653 * 26 25 24 50 50 H 1.08001 * 120.32648 * 180.02562 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 6 4.0800 2.8850 0.0000 6 1 3.6450 3.4245 0.8414 7 6 5.6048 2.8869 0.1264 8 7 6.1030 4.2593 0.0060 9 6 7.4464 4.5101 0.0937 10 1 8.1389 3.6957 0.2472 11 6 7.9180 5.8112 -0.0145 12 7 9.2092 6.0522 0.0693 13 14 6.7201 7.2199 -0.2792 14 1 6.2831 7.7520 1.0365 15 1 7.3871 8.2981 -1.0523 16 1 5.5379 6.7296 -1.0324 17 7 3.6929 3.5393 -1.2522 18 6 2.4756 4.1061 -1.3682 19 8 1.6989 4.0749 -0.4333 20 6 2.0859 4.7658 -2.6297 21 6 0.8893 5.3752 -2.8786 22 7 0.9400 5.8510 -4.1538 23 6 0.0358 6.5352 -4.9168 24 6 0.3377 6.8984 -6.1799 25 6 1.5906 6.5778 -6.7309 26 6 1.9233 6.9864 -8.1427 27 6 2.5006 5.8978 -5.9850 28 6 2.1716 5.5235 -4.6640 29 7 2.8503 4.8764 -3.7317 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3634 0.5139 0.8901 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 1.6767 1.9563 0.8900 36 1 1.6766 1.9563 -0.8900 37 1 3.9337 0.9286 -0.8891 38 1 3.9329 0.9289 0.8908 39 1 6.0357 2.2733 -0.6648 40 1 5.8894 2.4808 1.0970 41 1 5.4810 4.9908 -0.1315 42 1 9.5388 6.9614 -0.0068 43 1 4.3127 3.5646 -1.9981 44 1 0.0593 5.4634 -2.1934 45 1 -0.9298 6.7876 -4.5042 46 1 -0.3868 7.4384 -6.7715 47 1 1.6236 6.1952 -8.8301 48 1 1.3901 7.9042 -8.3906 49 1 2.9967 7.1552 -8.2288 50 1 3.4663 5.6468 -6.3985 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001276255293.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:00:35 Heat of formation + Delta-G solvation = 25.931025 kcal Electronic energy + Delta-G solvation = -30117.628296 eV Core-core repulsion = 26144.936110 eV Total energy + Delta-G solvation = -3972.692186 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -43.93331 -41.00381 -38.74034 -37.88708 -36.35682 -35.39424 -35.05745 -33.35021 -32.21694 -31.53530 -30.84830 -29.04109 -28.04024 -25.91809 -25.14189 -23.90718 -23.56851 -22.77339 -22.01782 -21.78071 -21.17667 -19.83043 -19.18065 -18.03339 -17.74245 -17.29358 -17.10908 -16.75392 -16.28105 -16.06590 -15.77815 -15.70730 -15.59116 -15.12550 -14.89839 -14.83609 -14.54469 -14.40723 -14.24670 -13.94946 -13.72000 -13.43235 -13.30932 -12.99832 -12.97354 -12.95354 -12.71859 -12.61461 -12.54507 -12.19417 -11.99301 -11.90877 -11.86935 -11.64962 -11.49989 -11.46697 -11.36432 -11.13564 -11.02499 -10.10328 -9.86902 -9.34574 -8.91887 -8.07506 -5.39309 -0.37760 0.13270 0.97744 1.30121 1.31225 1.38303 1.41536 2.17856 2.26574 2.41081 2.51813 2.96745 3.25025 3.37747 3.48050 3.68261 3.75591 3.84885 4.05238 4.06720 4.10097 4.13895 4.24308 4.28702 4.31505 4.42468 4.51185 4.58655 4.66027 4.77104 4.81908 4.85452 4.88662 4.92884 4.98157 4.98253 5.05878 5.13131 5.16133 5.19054 5.26596 5.32885 5.37965 5.39931 5.51518 5.54755 5.59586 5.72449 5.92577 6.16942 6.38879 6.65868 7.02453 7.13848 7.78833 7.96470 9.14093 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.006467 B = 0.004230 C = 0.002774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4328.343788 B = 6617.759710 C =10090.729727 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.122 4.122 3 C -0.104 4.104 4 C -0.118 4.118 5 C 0.143 3.857 6 H 0.075 0.925 7 C 0.148 3.852 8 N -0.758 5.758 9 C -0.229 4.229 10 H 0.067 0.933 11 C -0.053 4.053 12 N -0.978 5.978 13 Si 0.944 3.056 14 H -0.281 1.281 15 H -0.291 1.291 16 H -0.271 1.271 17 N -0.698 5.698 18 C 0.598 3.402 19 O -0.555 6.555 20 C -0.027 4.027 21 C -0.017 4.017 22 N -0.369 5.369 23 C 0.048 3.952 24 C -0.128 4.128 25 C -0.048 4.048 26 C -0.112 4.112 27 C -0.120 4.120 28 C 0.217 3.783 29 N -0.508 5.508 30 H 0.043 0.957 31 H 0.065 0.935 32 H 0.050 0.950 33 H 0.060 0.940 34 H 0.070 0.930 35 H 0.052 0.948 36 H 0.044 0.956 37 H 0.071 0.929 38 H 0.091 0.909 39 H 0.040 0.960 40 H 0.052 0.948 41 H 0.362 0.638 42 H 0.258 0.742 43 H 0.408 0.592 44 H 0.217 0.783 45 H 0.204 0.796 46 H 0.197 0.803 47 H 0.091 0.909 48 H 0.095 0.905 49 H 0.071 0.929 50 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.711 -2.624 -16.164 31.331 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.159 4.159 3 C -0.142 4.142 4 C -0.157 4.157 5 C 0.038 3.962 6 H 0.093 0.907 7 C 0.022 3.978 8 N -0.404 5.404 9 C -0.359 4.359 10 H 0.085 0.915 11 C -0.245 4.245 12 N -0.629 5.629 13 Si 0.773 3.227 14 H -0.207 1.207 15 H -0.218 1.218 16 H -0.197 1.197 17 N -0.348 5.348 18 C 0.384 3.616 19 O -0.434 6.434 20 C -0.159 4.159 21 C -0.153 4.153 22 N -0.040 5.040 23 C -0.072 4.072 24 C -0.147 4.147 25 C -0.054 4.054 26 C -0.168 4.168 27 C -0.141 4.141 28 C -0.029 4.029 29 N -0.230 5.230 30 H 0.062 0.938 31 H 0.084 0.916 32 H 0.070 0.930 33 H 0.079 0.921 34 H 0.088 0.912 35 H 0.071 0.929 36 H 0.063 0.937 37 H 0.090 0.910 38 H 0.109 0.891 39 H 0.058 0.942 40 H 0.070 0.930 41 H 0.195 0.805 42 H 0.067 0.933 43 H 0.244 0.756 44 H 0.233 0.767 45 H 0.221 0.779 46 H 0.214 0.786 47 H 0.110 0.890 48 H 0.113 0.887 49 H 0.090 0.910 50 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -26.251 -3.055 -15.446 30.611 hybrid contribution -0.267 1.358 -0.013 1.384 sum -26.518 -1.697 -15.458 30.742 Atomic orbital electron populations 1.21727 0.95658 1.01818 1.01328 1.21542 0.96172 0.95998 1.02213 1.21550 0.94420 0.96742 1.01507 1.21926 0.96269 0.93862 1.03647 1.21319 0.94034 0.94697 0.86124 0.90681 1.21127 0.90859 0.85787 1.00069 1.42737 1.03764 1.04742 1.89131 1.19081 0.83669 0.93440 1.39756 0.91455 1.25281 0.96896 0.99370 1.02916 1.69838 1.13302 1.20319 1.59411 0.85573 0.79028 0.80231 0.77865 1.20704 1.21784 1.19655 1.45880 1.15756 1.55983 1.17175 1.17042 0.81973 0.77421 0.85181 1.90748 1.52168 1.61003 1.39519 1.20694 0.93760 1.06548 0.94866 1.22807 1.01797 1.04368 0.86279 1.42941 1.13827 1.36217 1.11064 1.22505 0.95736 0.96283 0.92660 1.21355 0.97953 1.01607 0.93821 1.20256 0.92847 0.94211 0.98059 1.20901 1.03325 1.03264 0.89357 1.20387 1.02736 1.02440 0.88503 1.21362 0.83343 1.01327 0.96861 1.70774 1.30780 1.21105 1.00322 0.93756 0.91586 0.93042 0.92096 0.91173 0.92894 0.93738 0.91010 0.89089 0.94197 0.93021 0.80537 0.93264 0.75609 0.76656 0.77881 0.78600 0.89025 0.88660 0.90963 0.83082 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.92 9.91 71.98 0.71 -2.21 16 2 C -0.12 -2.61 5.93 30.59 0.18 -2.43 16 3 C -0.10 -2.82 3.82 30.60 0.12 -2.70 16 4 C -0.12 -3.18 4.89 30.60 0.15 -3.03 16 5 C 0.14 4.82 2.41 44.99 0.11 4.93 16 6 H 0.08 2.77 7.58 -2.39 -0.02 2.75 16 7 C 0.15 5.77 5.82 86.38 0.50 6.27 16 8 N -0.76 -37.53 5.24 -343.46 -1.80 -39.33 16 9 C -0.23 -13.48 10.47 84.03 0.88 -12.60 16 10 H 0.07 4.24 8.06 -2.91 -0.02 4.21 16 11 C -0.05 -3.23 5.50 84.86 0.47 -2.76 16 12 N -0.98 -64.20 13.97 21.65 0.30 -63.90 16 13 Si 0.94 49.40 27.74 68.60 1.90 51.31 16 14 H -0.28 -14.39 7.11 99.48 0.71 -13.68 16 15 H -0.29 -15.14 7.11 99.48 0.71 -14.44 16 16 H -0.27 -13.80 6.52 99.48 0.65 -13.16 16 17 N -0.70 -24.89 4.47 -445.65 -1.99 -26.89 16 18 C 0.60 21.51 6.39 86.71 0.55 22.06 16 19 O -0.56 -20.81 14.01 -3.99 -0.06 -20.87 16 20 C -0.03 -0.90 6.94 40.80 0.28 -0.62 16 21 C -0.02 -0.44 11.47 83.62 0.96 0.52 16 22 N -0.37 -8.37 2.93 -351.26 -1.03 -9.40 16 23 C 0.05 0.59 10.93 83.16 0.91 1.50 16 24 C -0.13 -1.11 9.67 22.06 0.21 -0.90 16 25 C -0.05 -0.61 5.88 -19.84 -0.12 -0.73 16 26 C -0.11 -0.71 10.02 71.23 0.71 0.01 16 27 C -0.12 -2.54 9.75 22.45 0.22 -2.32 16 28 C 0.22 6.13 7.79 134.20 1.05 7.17 16 29 N -0.51 -17.75 11.01 -183.49 -2.02 -19.77 16 30 H 0.04 0.92 8.14 -2.39 -0.02 0.90 16 31 H 0.07 1.07 8.14 -2.38 -0.02 1.05 16 32 H 0.05 1.03 8.14 -2.38 -0.02 1.01 16 33 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 34 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 35 H 0.05 1.57 7.85 -2.39 -0.02 1.55 16 36 H 0.04 1.37 5.64 -2.39 -0.01 1.36 16 37 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 38 H 0.09 2.14 8.14 -2.39 -0.02 2.12 16 39 H 0.04 1.53 8.14 -2.38 -0.02 1.51 16 40 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 41 H 0.36 18.13 5.20 -92.71 -0.48 17.65 16 42 H 0.26 16.17 8.31 -92.70 -0.77 15.40 16 43 H 0.41 15.27 8.30 -92.70 -0.77 14.50 16 44 H 0.22 4.35 8.06 -2.91 -0.02 4.33 16 45 H 0.20 0.81 8.06 -2.91 -0.02 0.79 16 46 H 0.20 -0.03 8.06 -2.91 -0.02 -0.05 16 47 H 0.09 0.39 8.14 -2.38 -0.02 0.37 16 48 H 0.09 0.22 8.10 -2.39 -0.02 0.20 16 49 H 0.07 0.54 8.08 -2.39 -0.02 0.52 16 50 H 0.15 3.03 8.06 -2.91 -0.02 3.01 16 Total: -1.00 -81.29 408.45 2.85 -78.44 By element: Atomic # 1 Polarization: 38.59 SS G_CDS: -0.36 Total: 38.23 kcal Atomic # 6 Polarization: 4.27 SS G_CDS: 7.90 Total: 12.17 kcal Atomic # 7 Polarization: -152.74 SS G_CDS: -6.54 Total: -159.28 kcal Atomic # 8 Polarization: -20.81 SS G_CDS: -0.06 Total: -20.87 kcal Atomic # 14 Polarization: 49.40 SS G_CDS: 1.90 Total: 51.31 kcal Total: -81.29 2.85 -78.44 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001276255293.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.374 kcal (2) G-P(sol) polarization free energy of solvation -81.292 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.849 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.443 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.931 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds