Wall clock time and date at job start Wed Apr 1 2020 04:00:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53007 * 109.47025 * 2 1 4 4 C 1.52994 * 109.47025 * 179.97438 * 3 2 1 5 5 C 1.53003 * 109.47306 * 179.97438 * 4 3 2 6 6 H 1.09002 * 109.46892 * 305.00508 * 5 4 3 7 7 C 1.52996 * 109.47530 * 184.99714 * 5 4 3 8 8 N 1.46498 * 109.47059 * 184.99929 * 7 5 4 9 9 C 1.36943 * 119.99752 * 179.72430 * 8 7 5 10 10 H 1.08002 * 119.99793 * 0.27665 * 9 8 7 11 11 C 1.38811 * 120.00012 * 180.27737 * 9 8 7 12 12 N 1.31624 * 119.99698 * 0.02562 * 11 9 8 13 13 Si 1.86795 * 120.00072 * 180.02562 * 11 9 8 14 14 H 1.48503 * 109.47294 * 90.00155 * 13 11 9 15 15 H 1.48499 * 109.47218 * 210.00015 * 13 11 9 16 16 H 1.48496 * 109.47166 * 329.99846 * 13 11 9 17 17 N 1.46506 * 109.46609 * 64.99913 * 5 4 3 18 18 C 1.34782 * 119.99726 * 274.99704 * 17 5 4 19 19 O 1.21583 * 120.00249 * 0.02562 * 18 17 5 20 20 C 1.47586 * 119.99668 * 179.97438 * 18 17 5 21 21 C 1.36574 * 125.91862 * 179.71642 * 20 18 17 22 22 N 1.36194 * 107.09574 * 179.84469 * 21 20 18 23 23 C 1.36677 * 132.29616 * 180.10910 * 22 21 20 24 24 C 1.34853 * 120.64479 * 180.36149 * 23 22 21 25 25 C 1.40574 * 120.33494 * 359.97438 * 24 23 22 26 26 C 1.50703 * 120.12913 * 180.02562 * 25 24 23 27 27 C 1.35890 * 119.73245 * 0.02562 * 25 24 23 28 28 C 1.37271 * 107.34307 * 0.42315 * 22 21 20 29 29 N 1.32235 * 108.37321 * 359.73092 * 28 22 21 30 30 H 1.09001 * 109.46772 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47619 * 300.00358 * 1 2 3 32 32 H 1.09003 * 109.47243 * 60.00697 * 1 2 3 33 33 H 1.09001 * 109.47619 * 239.99641 * 2 1 3 34 34 H 1.09003 * 109.47243 * 119.99303 * 2 1 3 35 35 H 1.08994 * 109.47070 * 59.99773 * 3 2 1 36 36 H 1.09003 * 109.46541 * 299.99733 * 3 2 1 37 37 H 1.09001 * 109.47619 * 59.99641 * 4 3 2 38 38 H 1.09003 * 109.47243 * 299.99303 * 4 3 2 39 39 H 1.09004 * 109.47066 * 65.00196 * 7 5 4 40 40 H 1.08994 * 109.46974 * 305.00344 * 7 5 4 41 41 H 0.97001 * 120.00384 * 0.02562 * 8 7 5 42 42 H 0.96999 * 119.99739 * 180.02562 * 12 11 9 43 43 H 0.97000 * 120.00390 * 95.00648 * 17 5 4 44 44 H 1.08002 * 126.45017 * 0.02562 * 21 20 18 45 45 H 1.07999 * 119.68010 * 0.35004 * 23 22 21 46 46 H 1.07992 * 119.83370 * 180.02562 * 24 23 22 47 47 H 1.08999 * 109.47530 * 89.99818 * 26 25 24 48 48 H 1.09009 * 109.46642 * 209.99748 * 26 25 24 49 49 H 1.09002 * 109.46977 * 329.99427 * 26 25 24 50 50 H 1.08003 * 120.32412 * 180.02562 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5699 1.4426 0.0006 5 6 4.0799 2.8851 0.0000 6 1 3.6456 3.4236 -0.8423 7 6 5.6048 2.8869 -0.1250 8 7 6.1029 4.2594 -0.0058 9 6 7.4473 4.5089 -0.0814 10 1 8.1399 3.6943 -0.2333 11 6 7.9197 5.8087 0.0373 12 7 7.0755 6.8014 0.2229 13 14 9.7535 6.1491 -0.0665 14 1 10.1302 6.4056 -1.4799 15 1 10.0834 7.3397 0.7575 16 1 10.5047 4.9728 0.4404 17 7 3.6918 3.5407 1.2513 18 6 2.4744 4.1078 1.3655 19 8 1.6982 4.0747 0.4303 20 6 2.0831 4.7678 2.6263 21 6 0.8885 5.3825 2.8717 22 7 0.9357 5.8541 4.1485 23 6 0.0309 6.5393 4.9100 24 6 0.3317 6.9041 6.1729 25 6 1.5838 6.5831 6.7255 26 6 1.9149 6.9926 8.1375 27 6 2.4943 5.9022 5.9813 28 6 2.1666 5.5266 4.6604 29 7 2.8440 4.8733 3.7314 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8899 32 1 -0.3634 0.5137 -0.8901 33 1 1.8934 -0.5139 -0.8899 34 1 1.8933 -0.5137 0.8901 35 1 1.6766 1.9564 0.8899 36 1 1.6766 1.9563 -0.8901 37 1 3.9337 0.9286 -0.8891 38 1 3.9329 0.9290 0.8909 39 1 5.8903 2.4797 -1.0950 40 1 6.0350 2.2741 0.6671 41 1 5.4808 4.9910 0.1309 42 1 7.4056 7.7097 0.3054 43 1 4.3109 3.5669 1.9976 44 1 0.0610 5.4746 2.1838 45 1 -0.9343 6.7912 4.4962 46 1 -0.3932 7.4448 6.7630 47 1 1.6136 6.2023 8.8252 48 1 2.9884 7.1604 8.2248 49 1 1.3823 7.9112 8.3838 50 1 3.4590 5.6502 6.3964 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001276255294.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:00:40 Heat of formation + Delta-G solvation = 44.957200 kcal Electronic energy + Delta-G solvation = -29955.284394 eV Core-core repulsion = 25983.417245 eV Total energy + Delta-G solvation = -3971.867149 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.90232 -39.55128 -37.80436 -36.33778 -34.83056 -34.38539 -33.37962 -31.40588 -30.75356 -30.27574 -29.95044 -27.37445 -26.96783 -24.41300 -23.96991 -22.90391 -22.16522 -21.87053 -20.66100 -20.44942 -19.77463 -18.20776 -17.27247 -16.86267 -16.48084 -16.14630 -15.92402 -15.18565 -15.14301 -14.69835 -14.61890 -14.47495 -14.13562 -13.79431 -13.77050 -13.53692 -13.24645 -13.10576 -12.82061 -12.65259 -12.56906 -12.35487 -11.99575 -11.87375 -11.85673 -11.66295 -11.23783 -11.00456 -10.85944 -10.83143 -10.77216 -10.72520 -10.33232 -10.27803 -10.21645 -9.93815 -9.67415 -9.64957 -8.96805 -8.83740 -8.47591 -7.95264 -6.87094 -5.69458 -2.99097 0.48718 1.07178 2.16154 2.37287 3.22905 3.47588 3.52301 3.54342 3.57316 3.81884 3.96573 4.24703 4.49316 4.54412 4.63022 4.82651 4.93714 4.97761 5.13082 5.19875 5.25639 5.26829 5.30363 5.36551 5.48797 5.49319 5.55431 5.62105 5.63367 5.65958 5.82329 5.90728 5.95415 6.03944 6.05322 6.05915 6.11269 6.24551 6.26017 6.29329 6.37843 6.42078 6.55632 6.57777 6.72287 6.80058 6.85352 7.06765 7.62145 7.75123 8.07243 8.47865 8.63699 9.59589 10.16718 10.51981 11.52765 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.006245 B = 0.003840 C = 0.002534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4482.744384 B = 7289.130368 C =11047.318089 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.125 4.125 3 C -0.112 4.112 4 C -0.126 4.126 5 C 0.137 3.863 6 H 0.088 0.912 7 C 0.145 3.855 8 N -0.731 5.731 9 C -0.241 4.241 10 H 0.070 0.930 11 C -0.012 4.012 12 N -0.929 5.929 13 Si 0.907 3.093 14 H -0.290 1.290 15 H -0.292 1.292 16 H -0.282 1.282 17 N -0.689 5.689 18 C 0.600 3.400 19 O -0.541 6.541 20 C 0.017 3.983 21 C -0.024 4.024 22 N -0.367 5.367 23 C 0.058 3.942 24 C -0.137 4.137 25 C -0.076 4.076 26 C -0.110 4.110 27 C -0.075 4.075 28 C 0.227 3.773 29 N -0.455 5.455 30 H 0.047 0.953 31 H 0.050 0.950 32 H 0.053 0.947 33 H 0.057 0.943 34 H 0.055 0.945 35 H 0.063 0.937 36 H 0.067 0.933 37 H 0.071 0.929 38 H 0.062 0.938 39 H 0.034 0.966 40 H 0.024 0.976 41 H 0.387 0.613 42 H 0.254 0.746 43 H 0.413 0.587 44 H 0.194 0.806 45 H 0.165 0.835 46 H 0.150 0.850 47 H 0.075 0.925 48 H 0.073 0.927 49 H 0.070 0.930 50 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.395 -4.691 13.513 23.302 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.163 4.163 3 C -0.150 4.150 4 C -0.166 4.166 5 C 0.033 3.967 6 H 0.107 0.893 7 C 0.017 3.983 8 N -0.375 5.375 9 C -0.372 4.372 10 H 0.088 0.912 11 C -0.208 4.208 12 N -0.578 5.578 13 Si 0.738 3.262 14 H -0.218 1.218 15 H -0.219 1.219 16 H -0.208 1.208 17 N -0.339 5.339 18 C 0.385 3.615 19 O -0.419 6.419 20 C -0.117 4.117 21 C -0.159 4.159 22 N -0.040 5.040 23 C -0.063 4.063 24 C -0.157 4.157 25 C -0.082 4.082 26 C -0.167 4.167 27 C -0.095 4.095 28 C -0.018 4.018 29 N -0.176 5.176 30 H 0.066 0.934 31 H 0.070 0.930 32 H 0.072 0.928 33 H 0.076 0.924 34 H 0.074 0.926 35 H 0.082 0.918 36 H 0.085 0.915 37 H 0.089 0.911 38 H 0.081 0.919 39 H 0.051 0.949 40 H 0.042 0.958 41 H 0.221 0.779 42 H 0.064 0.936 43 H 0.249 0.751 44 H 0.211 0.789 45 H 0.182 0.818 46 H 0.168 0.832 47 H 0.093 0.907 48 H 0.092 0.908 49 H 0.089 0.911 50 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -17.964 -5.082 12.811 22.642 hybrid contribution 0.315 0.975 0.211 1.046 sum -17.649 -4.108 13.022 22.315 Atomic orbital electron populations 1.21739 0.96348 1.00753 1.01806 1.21573 0.95546 0.97820 1.01337 1.21672 0.94834 0.95276 1.03213 1.21981 0.96065 0.96284 1.02220 1.21359 0.96163 0.92445 0.86757 0.89347 1.20961 0.89208 0.89432 0.98747 1.42349 1.05379 1.02015 1.87800 1.19210 0.83642 0.92488 1.41876 0.91175 1.24744 0.97557 0.95713 1.02801 1.69686 1.32776 0.98960 1.56345 0.86199 0.85286 0.77369 0.77371 1.21796 1.21859 1.20769 1.45778 1.15499 1.55352 1.17281 1.16787 0.82346 0.77739 0.84625 1.90771 1.52060 1.60331 1.38765 1.20757 0.92045 1.03979 0.94908 1.22562 1.02451 1.05587 0.85334 1.42764 1.13682 1.36222 1.11305 1.21617 0.95013 0.97338 0.92353 1.20716 0.97960 1.02911 0.94160 1.19727 0.93348 0.97863 0.97271 1.20761 1.02891 1.01711 0.91313 1.20186 1.01194 0.99178 0.88906 1.20934 0.82717 1.01841 0.96298 1.70906 1.28940 1.18415 0.99337 0.93392 0.93045 0.92788 0.92415 0.92636 0.91809 0.91463 0.91070 0.91905 0.94851 0.95785 0.77928 0.93606 0.75103 0.78887 0.81797 0.83213 0.90657 0.90820 0.91069 0.82975 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.64 9.91 37.15 0.37 -1.27 16 2 C -0.13 -1.50 5.93 -26.73 -0.16 -1.65 16 3 C -0.11 -1.62 3.81 -26.73 -0.10 -1.72 16 4 C -0.13 -1.85 4.89 -26.73 -0.13 -1.98 16 5 C 0.14 2.45 2.42 -67.93 -0.16 2.29 16 6 H 0.09 1.74 7.58 -51.93 -0.39 1.35 16 7 C 0.14 2.96 5.82 -4.04 -0.02 2.94 16 8 N -0.73 -19.00 5.43 -59.91 -0.33 -19.33 16 9 C -0.24 -6.88 9.99 -15.06 -0.15 -7.03 16 10 H 0.07 1.93 7.83 -52.49 -0.41 1.52 16 11 C -0.01 -0.35 5.50 -17.43 -0.10 -0.45 16 12 N -0.93 -29.00 13.06 55.49 0.72 -28.27 16 13 Si 0.91 22.89 29.55 -169.99 -5.02 17.87 16 14 H -0.29 -7.31 7.11 56.52 0.40 -6.90 16 15 H -0.29 -7.43 7.11 56.52 0.40 -7.03 16 16 H -0.28 -6.90 7.11 56.52 0.40 -6.49 16 17 N -0.69 -12.64 4.47 -54.83 -0.24 -12.89 16 18 C 0.60 11.08 6.39 -12.44 -0.08 11.00 16 19 O -0.54 -10.50 14.00 5.29 0.07 -10.43 16 20 C 0.02 0.28 6.94 -83.45 -0.58 -0.29 16 21 C -0.02 -0.35 11.47 -16.22 -0.19 -0.53 16 22 N -0.37 -4.68 2.93 -62.38 -0.18 -4.86 16 23 C 0.06 0.50 10.93 -16.59 -0.18 0.32 16 24 C -0.14 -0.99 9.67 -39.90 -0.39 -1.38 16 25 C -0.08 -0.65 5.88 -104.58 -0.62 -1.26 16 26 C -0.11 -0.61 10.02 36.01 0.36 -0.25 16 27 C -0.07 -0.86 9.75 -39.31 -0.38 -1.24 16 28 C 0.23 3.36 7.79 -156.04 -1.22 2.15 16 29 N -0.46 -8.01 11.01 -9.35 -0.10 -8.11 16 30 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 34 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.06 1.02 5.65 -51.93 -0.29 0.73 16 36 H 0.07 1.05 7.84 -51.93 -0.41 0.64 16 37 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 38 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 39 H 0.03 0.68 8.14 -51.93 -0.42 0.25 16 40 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16 41 H 0.39 10.84 7.33 -40.82 -0.30 10.54 16 42 H 0.25 7.68 8.31 -40.82 -0.34 7.34 16 43 H 0.41 7.89 8.30 -40.82 -0.34 7.55 16 44 H 0.19 2.23 8.06 -52.49 -0.42 1.80 16 45 H 0.16 0.84 8.06 -52.49 -0.42 0.42 16 46 H 0.15 0.58 8.06 -52.49 -0.42 0.15 16 47 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 48 H 0.07 0.40 8.08 -51.92 -0.42 -0.02 16 49 H 0.07 0.30 8.10 -51.93 -0.42 -0.12 16 50 H 0.15 1.56 8.06 -52.48 -0.42 1.14 16 LS Contribution 411.56 15.07 6.20 6.20 Total: -1.00 -34.90 411.56 -10.64 -45.54 By element: Atomic # 1 Polarization: 22.69 SS G_CDS: -8.04 Total: 14.65 kcal Atomic # 6 Polarization: 3.35 SS G_CDS: -3.72 Total: -0.37 kcal Atomic # 7 Polarization: -73.34 SS G_CDS: -0.13 Total: -73.47 kcal Atomic # 8 Polarization: -10.50 SS G_CDS: 0.07 Total: -10.43 kcal Atomic # 14 Polarization: 22.89 SS G_CDS: -5.02 Total: 17.87 kcal Total LS contribution 6.20 Total: 6.20 kcal Total: -34.90 -10.64 -45.54 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001276255294.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.499 kcal (2) G-P(sol) polarization free energy of solvation -34.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.639 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.541 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds