Wall clock time and date at job start Wed Apr 1 2020 04:00:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53007 * 109.47025 * 2 1 4 4 C 1.52994 * 109.47025 * 179.97438 * 3 2 1 5 5 C 1.53003 * 109.47306 * 179.97438 * 4 3 2 6 6 H 1.09002 * 109.46892 * 305.00508 * 5 4 3 7 7 C 1.52996 * 109.47530 * 184.99714 * 5 4 3 8 8 N 1.46498 * 109.47059 * 184.99929 * 7 5 4 9 9 C 1.36943 * 119.99752 * 179.72430 * 8 7 5 10 10 H 1.08002 * 119.99793 * 0.27665 * 9 8 7 11 11 C 1.38811 * 120.00012 * 180.27737 * 9 8 7 12 12 N 1.31624 * 119.99698 * 0.02562 * 11 9 8 13 13 Si 1.86795 * 120.00072 * 180.02562 * 11 9 8 14 14 H 1.48503 * 109.47294 * 90.00155 * 13 11 9 15 15 H 1.48499 * 109.47218 * 210.00015 * 13 11 9 16 16 H 1.48496 * 109.47166 * 329.99846 * 13 11 9 17 17 N 1.46506 * 109.46609 * 64.99913 * 5 4 3 18 18 C 1.34782 * 119.99726 * 274.99704 * 17 5 4 19 19 O 1.21583 * 120.00249 * 0.02562 * 18 17 5 20 20 C 1.47586 * 119.99668 * 179.97438 * 18 17 5 21 21 C 1.36574 * 125.91862 * 179.71642 * 20 18 17 22 22 N 1.36194 * 107.09574 * 179.84469 * 21 20 18 23 23 C 1.36677 * 132.29616 * 180.10910 * 22 21 20 24 24 C 1.34853 * 120.64479 * 180.36149 * 23 22 21 25 25 C 1.40574 * 120.33494 * 359.97438 * 24 23 22 26 26 C 1.50703 * 120.12913 * 180.02562 * 25 24 23 27 27 C 1.35890 * 119.73245 * 0.02562 * 25 24 23 28 28 C 1.37271 * 107.34307 * 0.42315 * 22 21 20 29 29 N 1.32235 * 108.37321 * 359.73092 * 28 22 21 30 30 H 1.09001 * 109.46772 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47619 * 300.00358 * 1 2 3 32 32 H 1.09003 * 109.47243 * 60.00697 * 1 2 3 33 33 H 1.09001 * 109.47619 * 239.99641 * 2 1 3 34 34 H 1.09003 * 109.47243 * 119.99303 * 2 1 3 35 35 H 1.08994 * 109.47070 * 59.99773 * 3 2 1 36 36 H 1.09003 * 109.46541 * 299.99733 * 3 2 1 37 37 H 1.09001 * 109.47619 * 59.99641 * 4 3 2 38 38 H 1.09003 * 109.47243 * 299.99303 * 4 3 2 39 39 H 1.09004 * 109.47066 * 65.00196 * 7 5 4 40 40 H 1.08994 * 109.46974 * 305.00344 * 7 5 4 41 41 H 0.97001 * 120.00384 * 0.02562 * 8 7 5 42 42 H 0.96999 * 119.99739 * 180.02562 * 12 11 9 43 43 H 0.97000 * 120.00390 * 95.00648 * 17 5 4 44 44 H 1.08002 * 126.45017 * 0.02562 * 21 20 18 45 45 H 1.07999 * 119.68010 * 0.35004 * 23 22 21 46 46 H 1.07992 * 119.83370 * 180.02562 * 24 23 22 47 47 H 1.08999 * 109.47530 * 89.99818 * 26 25 24 48 48 H 1.09009 * 109.46642 * 209.99748 * 26 25 24 49 49 H 1.09002 * 109.46977 * 329.99427 * 26 25 24 50 50 H 1.08003 * 120.32412 * 180.02562 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5699 1.4426 0.0006 5 6 4.0799 2.8851 0.0000 6 1 3.6456 3.4236 -0.8423 7 6 5.6048 2.8869 -0.1250 8 7 6.1029 4.2594 -0.0058 9 6 7.4473 4.5089 -0.0814 10 1 8.1399 3.6943 -0.2333 11 6 7.9197 5.8087 0.0373 12 7 7.0755 6.8014 0.2229 13 14 9.7535 6.1491 -0.0665 14 1 10.1302 6.4056 -1.4799 15 1 10.0834 7.3397 0.7575 16 1 10.5047 4.9728 0.4404 17 7 3.6918 3.5407 1.2513 18 6 2.4744 4.1078 1.3655 19 8 1.6982 4.0747 0.4303 20 6 2.0831 4.7678 2.6263 21 6 0.8885 5.3825 2.8717 22 7 0.9357 5.8541 4.1485 23 6 0.0309 6.5393 4.9100 24 6 0.3317 6.9041 6.1729 25 6 1.5838 6.5831 6.7255 26 6 1.9149 6.9926 8.1375 27 6 2.4943 5.9022 5.9813 28 6 2.1666 5.5266 4.6604 29 7 2.8440 4.8733 3.7314 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8899 32 1 -0.3634 0.5137 -0.8901 33 1 1.8934 -0.5139 -0.8899 34 1 1.8933 -0.5137 0.8901 35 1 1.6766 1.9564 0.8899 36 1 1.6766 1.9563 -0.8901 37 1 3.9337 0.9286 -0.8891 38 1 3.9329 0.9290 0.8909 39 1 5.8903 2.4797 -1.0950 40 1 6.0350 2.2741 0.6671 41 1 5.4808 4.9910 0.1309 42 1 7.4056 7.7097 0.3054 43 1 4.3109 3.5669 1.9976 44 1 0.0610 5.4746 2.1838 45 1 -0.9343 6.7912 4.4962 46 1 -0.3932 7.4448 6.7630 47 1 1.6136 6.2023 8.8252 48 1 2.9884 7.1604 8.2248 49 1 1.3823 7.9112 8.3838 50 1 3.4590 5.6502 6.3964 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001276255294.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:00:39 Heat of formation + Delta-G solvation = 23.424972 kcal Electronic energy + Delta-G solvation = -29956.218101 eV Core-core repulsion = 25983.417245 eV Total energy + Delta-G solvation = -3972.800856 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -43.88905 -40.93520 -38.69460 -37.78933 -36.26407 -35.34914 -35.01228 -33.05794 -32.03091 -31.46028 -30.81265 -28.78431 -27.98413 -25.99181 -25.15257 -23.86860 -23.76665 -22.73581 -21.89862 -21.76530 -21.12142 -19.34670 -19.06493 -17.99548 -17.69884 -17.24512 -17.08250 -16.71652 -16.22109 -15.97479 -15.79900 -15.57004 -15.34787 -15.16010 -15.06511 -14.80507 -14.46871 -14.26861 -14.14298 -13.83874 -13.54183 -13.39455 -13.15958 -12.95124 -12.87717 -12.79331 -12.67148 -12.53058 -12.50660 -12.12976 -12.02070 -11.88192 -11.85788 -11.61749 -11.45210 -11.41406 -11.35284 -11.07160 -10.94557 -10.04666 -9.81142 -9.02026 -8.88288 -7.93997 -5.24458 -0.34027 0.17033 1.03148 1.45455 1.46035 1.48784 1.57123 2.23184 2.32127 2.55711 2.57282 3.01681 3.39422 3.44809 3.62743 3.72197 3.78781 3.99705 4.07604 4.11303 4.13006 4.23678 4.28901 4.31329 4.35243 4.45632 4.55741 4.60352 4.68753 4.79414 4.83742 4.87633 4.89534 4.94539 4.99557 5.01140 5.07372 5.14531 5.18557 5.21583 5.30056 5.33819 5.40931 5.41976 5.49056 5.54633 5.57377 5.62516 5.96918 6.25528 6.44686 6.71376 7.20319 7.32254 8.06280 8.30139 9.29306 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.006245 B = 0.003840 C = 0.002534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4482.744384 B = 7289.130368 C =11047.318089 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.121 4.121 3 C -0.105 4.105 4 C -0.117 4.117 5 C 0.146 3.854 6 H 0.066 0.934 7 C 0.145 3.855 8 N -0.744 5.744 9 C -0.245 4.245 10 H 0.081 0.919 11 C -0.077 4.077 12 N -0.970 5.970 13 Si 0.977 3.023 14 H -0.287 1.287 15 H -0.297 1.297 16 H -0.266 1.266 17 N -0.692 5.692 18 C 0.598 3.402 19 O -0.560 6.560 20 C -0.024 4.024 21 C -0.019 4.019 22 N -0.368 5.368 23 C 0.047 3.953 24 C -0.128 4.128 25 C -0.048 4.048 26 C -0.111 4.111 27 C -0.120 4.120 28 C 0.216 3.784 29 N -0.506 5.506 30 H 0.067 0.933 31 H 0.043 0.957 32 H 0.050 0.950 33 H 0.070 0.930 34 H 0.061 0.939 35 H 0.043 0.957 36 H 0.050 0.950 37 H 0.090 0.910 38 H 0.071 0.929 39 H 0.044 0.956 40 H 0.035 0.965 41 H 0.372 0.628 42 H 0.249 0.751 43 H 0.407 0.593 44 H 0.216 0.784 45 H 0.204 0.796 46 H 0.198 0.802 47 H 0.092 0.908 48 H 0.071 0.929 49 H 0.095 0.905 50 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.767 -4.922 15.374 25.521 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.158 4.158 3 C -0.142 4.142 4 C -0.156 4.156 5 C 0.041 3.959 6 H 0.084 0.916 7 C 0.019 3.981 8 N -0.387 5.387 9 C -0.377 4.377 10 H 0.099 0.901 11 C -0.269 4.269 12 N -0.621 5.621 13 Si 0.806 3.194 14 H -0.214 1.214 15 H -0.224 1.224 16 H -0.191 1.191 17 N -0.341 5.341 18 C 0.384 3.616 19 O -0.439 6.439 20 C -0.156 4.156 21 C -0.155 4.155 22 N -0.040 5.040 23 C -0.073 4.073 24 C -0.148 4.148 25 C -0.055 4.055 26 C -0.168 4.168 27 C -0.140 4.140 28 C -0.030 4.030 29 N -0.228 5.228 30 H 0.086 0.914 31 H 0.062 0.938 32 H 0.069 0.931 33 H 0.089 0.911 34 H 0.080 0.920 35 H 0.061 0.939 36 H 0.069 0.931 37 H 0.108 0.892 38 H 0.090 0.910 39 H 0.062 0.938 40 H 0.053 0.947 41 H 0.204 0.796 42 H 0.058 0.942 43 H 0.242 0.758 44 H 0.232 0.768 45 H 0.221 0.779 46 H 0.215 0.785 47 H 0.110 0.890 48 H 0.090 0.910 49 H 0.114 0.886 50 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -19.343 -5.368 14.669 24.863 hybrid contribution 0.621 1.107 -0.187 1.283 sum -18.722 -4.261 14.482 24.050 Atomic orbital electron populations 1.21728 0.95636 1.01855 1.01307 1.21540 0.96198 0.95843 1.02251 1.21547 0.94482 0.96812 1.01386 1.21922 0.96252 0.93889 1.03500 1.21251 0.94315 0.94313 0.85984 0.91611 1.21124 0.90883 0.86824 0.99308 1.42547 1.04578 1.03755 1.87809 1.19672 0.84917 0.92837 1.40233 0.90142 1.25623 1.02157 0.95629 1.03446 1.69875 1.34835 0.99059 1.58340 0.85088 0.79923 0.77249 0.77166 1.21408 1.22410 1.19077 1.45783 1.15555 1.55739 1.17008 1.17040 0.82021 0.77346 0.85159 1.90731 1.52433 1.61190 1.39589 1.20686 0.93771 1.06347 0.94753 1.22783 1.01854 1.04635 0.86225 1.42923 1.13832 1.36300 1.10935 1.22515 0.95723 0.96289 0.92733 1.21348 0.97980 1.01631 0.93794 1.20257 0.92841 0.94265 0.98099 1.20897 1.03304 1.03259 0.89290 1.20375 1.02685 1.02464 0.88476 1.21378 0.83382 1.01302 0.96917 1.70774 1.30651 1.21032 1.00350 0.91439 0.93799 0.93101 0.91110 0.91998 0.93853 0.93134 0.89179 0.91005 0.93784 0.94748 0.79627 0.94249 0.75795 0.76767 0.77920 0.78535 0.88981 0.91003 0.88638 0.83153 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.12 9.91 71.98 0.71 -2.41 16 2 C -0.12 -2.76 5.93 30.59 0.18 -2.58 16 3 C -0.10 -3.06 3.81 30.59 0.12 -2.95 16 4 C -0.12 -3.42 4.89 30.59 0.15 -3.27 16 5 C 0.15 5.43 2.42 44.99 0.11 5.54 16 6 H 0.07 2.75 7.58 -2.39 -0.02 2.73 16 7 C 0.15 6.06 5.82 86.38 0.50 6.56 16 8 N -0.74 -39.97 5.43 -343.46 -1.87 -41.84 16 9 C -0.24 -14.18 9.99 84.03 0.84 -13.34 16 10 H 0.08 4.40 7.83 -2.91 -0.02 4.37 16 11 C -0.08 -4.57 5.50 84.86 0.47 -4.11 16 12 N -0.97 -62.61 13.06 21.65 0.28 -62.33 16 13 Si 0.98 47.76 29.55 68.60 2.03 49.79 16 14 H -0.29 -13.76 7.11 99.48 0.71 -13.05 16 15 H -0.30 -14.66 7.11 99.48 0.71 -13.96 16 16 H -0.27 -12.17 7.11 99.48 0.71 -11.47 16 17 N -0.69 -27.22 4.47 -445.63 -1.99 -29.21 16 18 C 0.60 23.79 6.39 86.71 0.55 24.35 16 19 O -0.56 -23.18 14.00 -3.98 -0.06 -23.23 16 20 C -0.02 -0.88 6.94 40.80 0.28 -0.59 16 21 C -0.02 -0.56 11.47 83.63 0.96 0.40 16 22 N -0.37 -9.31 2.93 -351.26 -1.03 -10.34 16 23 C 0.05 0.68 10.93 83.16 0.91 1.59 16 24 C -0.13 -1.35 9.67 22.06 0.21 -1.14 16 25 C -0.05 -0.71 5.88 -19.84 -0.12 -0.83 16 26 C -0.11 -0.85 10.02 71.24 0.71 -0.14 16 27 C -0.12 -2.79 9.75 22.45 0.22 -2.57 16 28 C 0.22 6.68 7.79 134.20 1.05 7.72 16 29 N -0.51 -19.27 11.01 -183.50 -2.02 -21.29 16 30 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 31 H 0.04 0.98 8.14 -2.39 -0.02 0.96 16 32 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 33 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 34 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 35 H 0.04 1.45 5.65 -2.39 -0.01 1.44 16 36 H 0.05 1.63 7.84 -2.39 -0.02 1.61 16 37 H 0.09 2.30 8.14 -2.39 -0.02 2.28 16 38 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 39 H 0.04 1.77 8.14 -2.38 -0.02 1.75 16 40 H 0.03 1.39 8.14 -2.39 -0.02 1.37 16 41 H 0.37 21.97 7.33 -92.71 -0.68 21.29 16 42 H 0.25 15.57 8.31 -92.71 -0.77 14.80 16 43 H 0.41 16.85 8.30 -92.71 -0.77 16.08 16 44 H 0.22 5.00 8.06 -2.91 -0.02 4.98 16 45 H 0.20 1.23 8.06 -2.91 -0.02 1.21 16 46 H 0.20 0.28 8.06 -2.91 -0.02 0.25 16 47 H 0.09 0.50 8.14 -2.39 -0.02 0.48 16 48 H 0.07 0.63 8.08 -2.38 -0.02 0.61 16 49 H 0.09 0.34 8.10 -2.39 -0.02 0.32 16 50 H 0.15 3.34 8.06 -2.91 -0.02 3.31 16 Total: -1.00 -80.61 411.56 2.71 -77.90 By element: Atomic # 1 Polarization: 48.80 SS G_CDS: -0.50 Total: 48.30 kcal Atomic # 6 Polarization: 4.39 SS G_CDS: 7.86 Total: 12.25 kcal Atomic # 7 Polarization: -158.38 SS G_CDS: -6.62 Total: -165.01 kcal Atomic # 8 Polarization: -23.18 SS G_CDS: -0.06 Total: -23.23 kcal Atomic # 14 Polarization: 47.76 SS G_CDS: 2.03 Total: 49.79 kcal Total: -80.61 2.71 -77.90 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001276255294.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.328 kcal (2) G-P(sol) polarization free energy of solvation -80.611 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.717 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.708 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.903 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.425 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds