Wall clock time and date at job start Wed Apr 1 2020 03:56:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50693 * 109.47218 * 2 1 4 4 C 1.30999 * 120.00464 * 126.33093 * 3 2 1 5 5 C 1.50707 * 119.99764 * 7.54339 * 4 3 2 6 6 C 1.52998 * 109.46973 * 127.61499 * 5 4 3 7 7 N 1.46898 * 109.46909 * 179.97438 * 6 5 4 8 8 C 1.48153 * 111.00130 * 284.40726 * 7 6 5 9 9 C 1.51064 * 105.62187 * 214.07661 * 8 7 6 10 10 N 1.34943 * 144.32848 * 197.20420 * 9 8 7 11 11 H 0.97001 * 124.88446 * 359.97438 * 10 9 8 12 12 N 1.28550 * 110.23813 * 180.02562 * 10 9 8 13 13 C 1.31925 * 110.04832 * 359.97438 * 12 10 9 14 14 C 1.47713 * 126.56075 * 180.02562 * 13 12 10 15 15 O 1.21573 * 119.99426 * 179.97438 * 14 13 12 16 16 N 1.34778 * 120.00365 * 359.97438 * 14 13 12 17 17 C 1.47064 * 136.05303 * 359.63090 * 16 14 13 18 18 C 1.53245 * 88.08129 * 207.20204 * 17 16 14 19 19 C 1.50693 * 114.32953 * 220.47029 * 18 17 16 20 20 H 1.08003 * 120.00127 * 93.75799 * 19 18 17 21 21 C 1.37874 * 120.00199 * 273.75956 * 19 18 17 22 22 N 1.31516 * 119.99917 * 359.97438 * 21 19 18 23 23 Si 1.86796 * 120.00267 * 179.97438 * 21 19 18 24 24 H 1.48504 * 109.47270 * 59.99993 * 23 21 19 25 25 H 1.48502 * 109.47501 * 179.97438 * 23 21 19 26 26 H 1.48504 * 109.47214 * 300.00401 * 23 21 19 27 27 C 1.47060 * 136.05693 * 179.97438 * 16 14 13 28 28 C 1.35375 * 108.59627 * 17.20604 * 9 8 7 29 29 C 1.48185 * 111.00076 * 170.00166 * 7 6 5 30 30 H 1.09001 * 109.47278 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47361 * 299.99469 * 1 2 3 32 32 H 1.09002 * 109.46995 * 60.00149 * 1 2 3 33 33 H 1.09005 * 109.47496 * 239.99867 * 2 1 3 34 34 H 1.09002 * 109.46995 * 119.99851 * 2 1 3 35 35 H 1.08005 * 120.00226 * 306.33159 * 3 2 1 36 36 H 1.07997 * 120.00833 * 187.54385 * 4 3 2 37 37 H 1.09003 * 109.46929 * 7.61577 * 5 4 3 38 38 H 1.08998 * 109.46902 * 247.61976 * 5 4 3 39 39 H 1.09003 * 109.47229 * 60.00262 * 6 5 4 40 40 H 1.08997 * 109.47260 * 300.00296 * 6 5 4 41 41 H 1.08994 * 110.22116 * 333.11227 * 8 7 6 42 42 H 1.09002 * 110.22052 * 95.04337 * 8 7 6 43 43 H 1.08997 * 113.46964 * 321.93180 * 17 16 14 44 44 H 1.08997 * 113.46947 * 92.38137 * 17 16 14 45 45 H 1.09005 * 114.01568 * 87.71222 * 18 17 16 46 46 H 0.97002 * 120.00080 * 179.97438 * 22 21 19 47 47 H 1.09004 * 113.46901 * 267.62402 * 27 16 14 48 48 H 1.08998 * 113.46928 * 38.06508 * 27 16 14 49 49 H 1.09006 * 110.23395 * 264.90490 * 29 7 6 50 50 H 1.08995 * 110.23254 * 26.86769 * 29 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4207 0.0000 4 6 2.8843 1.8143 0.9139 5 6 3.4924 0.8105 1.8593 6 6 5.0161 0.9479 1.8381 7 7 5.6088 -0.0302 2.7601 8 6 5.4416 0.3986 4.1683 9 6 6.6799 -0.0803 4.8890 10 7 7.2119 -0.3366 6.1024 11 1 6.7494 -0.2196 6.9469 12 7 8.4204 -0.7570 5.9782 13 6 8.7541 -0.8041 4.7027 14 6 10.0542 -1.2336 4.1486 15 8 10.2333 -1.2304 2.9462 16 7 11.0419 -1.6290 4.9761 17 6 11.2146 -1.7636 6.4303 18 6 12.7171 -1.5470 6.2200 19 6 13.5962 -2.4289 7.0687 20 1 13.9603 -3.3668 6.6759 21 6 13.9357 -2.0385 8.3467 22 7 13.4927 -0.8963 8.8249 23 14 15.0249 -3.1320 9.3990 24 1 16.3332 -3.3248 8.7233 25 1 15.2409 -2.4906 10.7209 26 1 14.3672 -4.4498 9.5892 27 6 12.4231 -2.1099 4.8223 28 6 7.6314 -0.3658 3.9694 29 6 7.0798 -0.0940 2.5929 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5137 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 1.8934 -0.5139 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 1.6899 2.1146 -0.7535 36 1 3.1510 2.8581 0.9900 37 1 3.2140 -0.1965 1.5484 38 1 3.1251 0.9935 2.8691 39 1 5.2945 1.9548 2.1490 40 1 5.3834 0.7649 0.8283 41 1 5.3689 1.4846 4.2254 42 1 4.5530 -0.0623 4.5995 43 1 10.7381 -0.9657 6.9998 44 1 10.9677 -2.7563 6.8067 45 1 13.0194 -0.4998 6.2259 46 1 13.7313 -0.6218 9.7242 47 1 12.5011 -3.1957 4.7663 48 1 12.9723 -1.6058 4.0270 49 1 7.3472 -0.9030 1.9131 50 1 7.4579 0.8563 2.2161 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001277530233.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:56:00 Heat of formation + Delta-G solvation = 119.360629 kcal Electronic energy + Delta-G solvation = -28898.062830 eV Core-core repulsion = 24929.422056 eV Total energy + Delta-G solvation = -3968.640774 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.89763 -39.24058 -38.79882 -36.95491 -36.88991 -33.16501 -32.66314 -31.90853 -30.86885 -29.17055 -28.29816 -27.79209 -25.46525 -24.85577 -24.42612 -23.54185 -22.89601 -21.59563 -20.41062 -20.01931 -18.67006 -18.05798 -17.65988 -16.81342 -16.42124 -16.32035 -16.04595 -15.32181 -15.11196 -14.95525 -14.70106 -14.53868 -14.38699 -14.19170 -13.95115 -13.34560 -13.25108 -13.00885 -12.68074 -12.51919 -12.44154 -12.33219 -12.15803 -11.88062 -11.72548 -11.43989 -11.40462 -11.32883 -11.23704 -10.94487 -10.86901 -10.72830 -10.67914 -10.28509 -9.73907 -9.37077 -9.29219 -9.27033 -9.15593 -9.01319 -8.53187 -8.40593 -7.79142 -6.13407 -4.18827 1.75614 1.84101 2.07285 2.56589 3.28273 3.33292 3.35354 3.50686 3.62629 3.86503 4.13310 4.37114 4.41937 4.45511 4.68782 4.72060 4.75017 4.87041 4.91316 4.98758 5.02629 5.15559 5.17593 5.21954 5.24924 5.31718 5.33517 5.49811 5.54290 5.64153 5.71553 5.74339 5.79348 5.83670 5.94479 6.11773 6.24058 6.28184 6.30530 6.35927 6.39896 6.49781 6.51540 6.63091 6.71217 6.80408 6.96604 7.04452 7.60572 7.84369 7.90259 8.23675 8.51313 8.81668 8.84579 9.47324 10.96291 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.031595 B = 0.001719 C = 0.001675 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 886.006348 B =16284.048131 C =16711.557649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.110 4.110 3 C -0.156 4.156 4 C -0.160 4.160 5 C -0.095 4.095 6 C 0.049 3.951 7 N -0.498 5.498 8 C 0.124 3.876 9 C -0.035 4.035 10 N -0.358 5.358 11 H 0.444 0.556 12 N -0.232 5.232 13 C 0.035 3.965 14 C 0.614 3.386 15 O -0.555 6.555 16 N -0.629 5.629 17 C 0.108 3.892 18 C 0.032 3.968 19 C -0.517 4.517 20 H 0.063 0.937 21 C 0.069 3.931 22 N -0.885 5.885 23 Si 0.896 3.104 24 H -0.275 1.275 25 H -0.287 1.287 26 H -0.275 1.275 27 C 0.102 3.898 28 C -0.171 4.171 29 C 0.114 3.886 30 H 0.055 0.945 31 H 0.053 0.947 32 H 0.053 0.947 33 H 0.069 0.931 34 H 0.079 0.921 35 H 0.107 0.893 36 H 0.108 0.892 37 H 0.087 0.913 38 H 0.069 0.931 39 H 0.044 0.956 40 H 0.084 0.916 41 H 0.067 0.933 42 H 0.092 0.908 43 H 0.067 0.933 44 H 0.072 0.928 45 H 0.068 0.932 46 H 0.264 0.736 47 H 0.075 0.925 48 H 0.059 0.941 49 H 0.098 0.902 50 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.524 5.567 -11.193 27.526 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.146 4.146 3 C -0.174 4.174 4 C -0.179 4.179 5 C -0.132 4.132 6 C -0.079 4.079 7 N -0.222 5.222 8 C -0.005 4.005 9 C -0.163 4.163 10 N -0.070 5.070 11 H 0.288 0.712 12 N -0.067 5.067 13 C -0.126 4.126 14 C 0.401 3.599 15 O -0.434 6.434 16 N -0.361 5.361 17 C -0.014 4.014 18 C 0.013 3.987 19 C -0.555 4.555 20 H 0.081 0.919 21 C -0.135 4.135 22 N -0.522 5.522 23 Si 0.723 3.277 24 H -0.201 1.201 25 H -0.213 1.213 26 H -0.201 1.201 27 C -0.020 4.020 28 C -0.182 4.182 29 C -0.014 4.014 30 H 0.074 0.926 31 H 0.073 0.927 32 H 0.072 0.928 33 H 0.088 0.912 34 H 0.097 0.903 35 H 0.125 0.875 36 H 0.126 0.874 37 H 0.106 0.894 38 H 0.087 0.913 39 H 0.062 0.938 40 H 0.102 0.898 41 H 0.085 0.915 42 H 0.110 0.890 43 H 0.086 0.914 44 H 0.090 0.910 45 H 0.086 0.914 46 H 0.073 0.927 47 H 0.094 0.906 48 H 0.078 0.922 49 H 0.116 0.884 50 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -24.397 5.018 -10.884 27.182 hybrid contribution 0.274 0.570 0.688 0.934 sum -24.123 5.588 -10.197 26.779 Atomic orbital electron populations 1.21692 0.95222 1.01658 1.01794 1.20848 0.95990 0.94723 1.03072 1.22824 0.98585 0.97573 0.98386 1.22745 0.98559 0.99186 0.97372 1.20797 0.93770 0.99533 0.99118 1.22352 0.94788 0.93367 0.97432 1.65542 1.10962 1.44228 1.01462 1.21095 0.92682 0.98482 0.88278 1.22019 1.00063 1.07686 0.86541 1.42580 1.09203 1.47776 1.07475 0.71186 1.74112 0.96129 1.16582 1.19836 1.21324 0.95893 1.06922 0.88483 1.16389 0.80492 0.78195 0.84839 1.90723 1.80979 1.57683 1.13984 1.49839 1.13830 1.61446 1.11006 1.23545 0.99651 1.00602 0.77618 1.20337 0.91039 0.98180 0.89166 1.20860 1.30826 1.05320 0.98466 0.91852 1.25019 0.95559 0.94969 0.97927 1.69955 1.44453 1.20786 1.16994 0.86602 0.81058 0.80643 0.79382 1.20052 1.21284 1.20091 1.23403 0.78623 0.99029 1.00921 1.20781 0.93430 1.07283 0.96663 1.20881 0.85400 1.02065 0.93049 0.92558 0.92737 0.92830 0.91247 0.90256 0.87455 0.87404 0.89450 0.91255 0.93822 0.89789 0.91485 0.88961 0.91419 0.91005 0.91433 0.92667 0.90638 0.92242 0.88390 0.91868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.76 9.89 37.16 0.37 -0.40 16 2 C -0.11 -0.65 6.04 -27.89 -0.17 -0.82 16 3 C -0.16 -0.96 9.51 -36.03 -0.34 -1.31 16 4 C -0.16 -1.01 9.51 -36.02 -0.34 -1.35 16 5 C -0.10 -0.63 5.43 -27.88 -0.15 -0.78 16 6 C 0.05 0.38 4.65 -3.83 -0.02 0.36 16 7 N -0.50 -5.08 5.47 -235.04 -1.29 -6.36 16 8 C 0.12 1.14 6.01 -4.11 -0.02 1.11 16 9 C -0.03 -0.44 8.26 -82.07 -0.68 -1.12 16 10 N -0.36 -4.61 6.83 33.58 0.23 -4.38 16 11 H 0.44 3.85 8.96 -190.39 -1.71 2.14 16 12 N -0.23 -4.03 10.79 33.35 0.36 -3.67 16 13 C 0.03 0.66 7.10 -82.88 -0.59 0.07 16 14 C 0.61 13.42 8.08 -12.39 -0.10 13.32 16 15 O -0.56 -13.05 17.70 5.30 0.09 -12.96 16 16 N -0.63 -13.91 3.69 -186.54 -0.69 -14.60 16 17 C 0.11 2.45 7.35 -8.64 -0.06 2.39 16 18 C 0.03 0.78 3.77 -91.38 -0.34 0.43 16 19 C -0.52 -13.41 8.82 -34.44 -0.30 -13.71 16 20 H 0.06 1.59 7.81 -52.48 -0.41 1.18 16 21 C 0.07 1.82 5.46 -17.82 -0.10 1.72 16 22 N -0.89 -24.49 13.26 55.43 0.74 -23.76 16 23 Si 0.90 20.31 29.54 -169.99 -5.02 15.29 16 24 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 25 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 26 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 27 C 0.10 2.22 8.19 -8.49 -0.07 2.15 16 28 C -0.17 -2.70 6.96 -104.54 -0.73 -3.43 16 29 C 0.11 1.49 6.59 -4.24 -0.03 1.46 16 30 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 31 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 32 H 0.05 0.26 8.14 -51.93 -0.42 -0.16 16 33 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 34 H 0.08 0.49 5.28 -51.93 -0.27 0.21 16 35 H 0.11 0.59 8.06 -52.48 -0.42 0.17 16 36 H 0.11 0.61 8.06 -52.49 -0.42 0.19 16 37 H 0.09 0.62 5.30 -51.93 -0.28 0.35 16 38 H 0.07 0.43 7.73 -51.93 -0.40 0.03 16 39 H 0.04 0.32 7.66 -51.93 -0.40 -0.08 16 40 H 0.08 0.66 8.08 -51.93 -0.42 0.24 16 41 H 0.07 0.52 7.50 -51.93 -0.39 0.13 16 42 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 43 H 0.07 1.57 7.51 -51.93 -0.39 1.18 16 44 H 0.07 1.62 8.10 -51.93 -0.42 1.20 16 45 H 0.07 1.79 8.11 -51.93 -0.42 1.37 16 46 H 0.26 6.96 8.31 -40.82 -0.34 6.63 16 47 H 0.08 1.56 8.10 -51.93 -0.42 1.14 16 48 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 49 H 0.10 1.37 8.14 -51.93 -0.42 0.94 16 50 H 0.06 0.78 7.80 -51.93 -0.41 0.37 16 LS Contribution 409.56 15.07 6.17 6.17 Total: -1.00 -31.45 409.56 -12.36 -43.81 By element: Atomic # 1 Polarization: 9.62 SS G_CDS: -9.27 Total: 0.35 kcal Atomic # 6 Polarization: 3.78 SS G_CDS: -3.68 Total: 0.10 kcal Atomic # 7 Polarization: -52.11 SS G_CDS: -0.65 Total: -52.76 kcal Atomic # 8 Polarization: -13.05 SS G_CDS: 0.09 Total: -12.96 kcal Atomic # 14 Polarization: 20.31 SS G_CDS: -5.02 Total: 15.29 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -31.45 -12.36 -43.81 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277530233.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 163.167 kcal (2) G-P(sol) polarization free energy of solvation -31.449 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 131.718 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.357 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.806 kcal (6) G-S(sol) free energy of system = (1) + (5) 119.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds