Wall clock time and date at job start Wed Apr 1 2020 03:55:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50693 * 109.47218 * 2 1 4 4 C 1.30999 * 120.00464 * 126.33093 * 3 2 1 5 5 C 1.50707 * 119.99764 * 7.54339 * 4 3 2 6 6 C 1.52998 * 109.46973 * 127.61499 * 5 4 3 7 7 N 1.46898 * 109.46909 * 179.97438 * 6 5 4 8 8 C 1.48153 * 111.00130 * 284.40726 * 7 6 5 9 9 C 1.51064 * 105.62187 * 214.07661 * 8 7 6 10 10 N 1.34943 * 144.32848 * 197.20420 * 9 8 7 11 11 H 0.97001 * 124.88446 * 359.97438 * 10 9 8 12 12 N 1.28550 * 110.23813 * 180.02562 * 10 9 8 13 13 C 1.31925 * 110.04832 * 359.97438 * 12 10 9 14 14 C 1.47713 * 126.56075 * 180.02562 * 13 12 10 15 15 O 1.21573 * 119.99426 * 179.97438 * 14 13 12 16 16 N 1.34778 * 120.00365 * 359.97438 * 14 13 12 17 17 C 1.47064 * 136.05303 * 359.63090 * 16 14 13 18 18 C 1.53245 * 88.08129 * 207.20204 * 17 16 14 19 19 C 1.50693 * 114.32953 * 220.47029 * 18 17 16 20 20 H 1.08003 * 120.00127 * 93.75799 * 19 18 17 21 21 C 1.37874 * 120.00199 * 273.75956 * 19 18 17 22 22 N 1.31516 * 119.99917 * 359.97438 * 21 19 18 23 23 Si 1.86796 * 120.00267 * 179.97438 * 21 19 18 24 24 H 1.48504 * 109.47270 * 59.99993 * 23 21 19 25 25 H 1.48502 * 109.47501 * 179.97438 * 23 21 19 26 26 H 1.48504 * 109.47214 * 300.00401 * 23 21 19 27 27 C 1.47060 * 136.05693 * 179.97438 * 16 14 13 28 28 C 1.35375 * 108.59627 * 17.20604 * 9 8 7 29 29 C 1.48185 * 111.00076 * 170.00166 * 7 6 5 30 30 H 1.09001 * 109.47278 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47361 * 299.99469 * 1 2 3 32 32 H 1.09002 * 109.46995 * 60.00149 * 1 2 3 33 33 H 1.09005 * 109.47496 * 239.99867 * 2 1 3 34 34 H 1.09002 * 109.46995 * 119.99851 * 2 1 3 35 35 H 1.08005 * 120.00226 * 306.33159 * 3 2 1 36 36 H 1.07997 * 120.00833 * 187.54385 * 4 3 2 37 37 H 1.09003 * 109.46929 * 7.61577 * 5 4 3 38 38 H 1.08998 * 109.46902 * 247.61976 * 5 4 3 39 39 H 1.09003 * 109.47229 * 60.00262 * 6 5 4 40 40 H 1.08997 * 109.47260 * 300.00296 * 6 5 4 41 41 H 1.08994 * 110.22116 * 333.11227 * 8 7 6 42 42 H 1.09002 * 110.22052 * 95.04337 * 8 7 6 43 43 H 1.08997 * 113.46964 * 321.93180 * 17 16 14 44 44 H 1.08997 * 113.46947 * 92.38137 * 17 16 14 45 45 H 1.09005 * 114.01568 * 87.71222 * 18 17 16 46 46 H 0.97002 * 120.00080 * 179.97438 * 22 21 19 47 47 H 1.09004 * 113.46901 * 267.62402 * 27 16 14 48 48 H 1.08998 * 113.46928 * 38.06508 * 27 16 14 49 49 H 1.09006 * 110.23395 * 264.90490 * 29 7 6 50 50 H 1.08995 * 110.23254 * 26.86769 * 29 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4207 0.0000 4 6 2.8843 1.8143 0.9139 5 6 3.4924 0.8105 1.8593 6 6 5.0161 0.9479 1.8381 7 7 5.6088 -0.0302 2.7601 8 6 5.4416 0.3986 4.1683 9 6 6.6799 -0.0803 4.8890 10 7 7.2119 -0.3366 6.1024 11 1 6.7494 -0.2196 6.9469 12 7 8.4204 -0.7570 5.9782 13 6 8.7541 -0.8041 4.7027 14 6 10.0542 -1.2336 4.1486 15 8 10.2333 -1.2304 2.9462 16 7 11.0419 -1.6290 4.9761 17 6 11.2146 -1.7636 6.4303 18 6 12.7171 -1.5470 6.2200 19 6 13.5962 -2.4289 7.0687 20 1 13.9603 -3.3668 6.6759 21 6 13.9357 -2.0385 8.3467 22 7 13.4927 -0.8963 8.8249 23 14 15.0249 -3.1320 9.3990 24 1 16.3332 -3.3248 8.7233 25 1 15.2409 -2.4906 10.7209 26 1 14.3672 -4.4498 9.5892 27 6 12.4231 -2.1099 4.8223 28 6 7.6314 -0.3658 3.9694 29 6 7.0798 -0.0940 2.5929 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5137 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 1.8934 -0.5139 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 1.6899 2.1146 -0.7535 36 1 3.1510 2.8581 0.9900 37 1 3.2140 -0.1965 1.5484 38 1 3.1251 0.9935 2.8691 39 1 5.2945 1.9548 2.1490 40 1 5.3834 0.7649 0.8283 41 1 5.3689 1.4846 4.2254 42 1 4.5530 -0.0623 4.5995 43 1 10.7381 -0.9657 6.9998 44 1 10.9677 -2.7563 6.8067 45 1 13.0194 -0.4998 6.2259 46 1 13.7313 -0.6218 9.7242 47 1 12.5011 -3.1957 4.7663 48 1 12.9723 -1.6058 4.0270 49 1 7.3472 -0.9030 1.9131 50 1 7.4579 0.8563 2.2161 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001277530233.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:55:59 Heat of formation + Delta-G solvation = 99.412916 kcal Electronic energy + Delta-G solvation = -28898.927828 eV Core-core repulsion = 24929.422056 eV Total energy + Delta-G solvation = -3969.505772 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -44.06710 -40.99723 -39.64118 -38.71876 -37.45236 -34.65699 -33.84356 -33.19426 -31.58617 -30.87859 -29.13613 -28.66245 -27.30627 -26.69546 -25.35225 -24.33257 -23.95495 -22.32826 -21.90225 -21.41058 -19.67907 -19.13842 -18.78106 -18.70239 -17.80368 -17.36458 -16.88443 -16.77530 -16.55917 -16.24625 -15.88633 -15.68867 -15.44387 -14.93450 -14.85799 -14.55455 -14.31056 -14.08454 -13.99956 -13.84959 -13.38284 -13.26459 -13.16959 -13.03988 -12.89859 -12.86921 -12.74936 -12.64449 -12.40562 -12.20224 -12.05936 -11.85172 -11.72665 -11.57035 -11.17173 -11.04818 -10.92443 -10.54671 -10.52683 -10.29456 -9.76149 -9.59472 -9.32785 -8.15214 -6.27042 0.40116 0.89363 1.37601 1.49322 1.50125 1.53059 1.58186 1.94324 2.25242 2.47371 2.78836 3.02133 3.14644 3.47917 3.52055 3.93232 3.99245 4.13397 4.19260 4.26810 4.28661 4.37388 4.38786 4.41685 4.43183 4.45756 4.56634 4.56838 4.69025 4.70740 4.75482 4.81851 4.83549 4.84853 4.90986 4.99676 5.04673 5.08915 5.15317 5.18921 5.27725 5.30118 5.41923 5.55790 5.58301 5.81367 5.87966 5.88791 6.05233 6.05923 6.23409 6.66611 6.75915 6.81332 7.11281 7.42724 8.94772 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.031595 B = 0.001719 C = 0.001675 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 886.006348 B =16284.048131 C =16711.557649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.112 4.112 3 C -0.161 4.161 4 C -0.164 4.164 5 C -0.088 4.088 6 C 0.050 3.950 7 N -0.501 5.501 8 C 0.127 3.873 9 C -0.006 4.006 10 N -0.336 5.336 11 H 0.463 0.537 12 N -0.256 5.256 13 C -0.002 4.002 14 C 0.609 3.391 15 O -0.580 6.580 16 N -0.634 5.634 17 C 0.127 3.873 18 C 0.023 3.977 19 C -0.529 4.529 20 H 0.069 0.931 21 C 0.021 3.979 22 N -0.919 5.919 23 Si 0.961 3.039 24 H -0.270 1.270 25 H -0.287 1.287 26 H -0.268 1.268 27 C 0.108 3.892 28 C -0.203 4.203 29 C 0.119 3.881 30 H 0.058 0.942 31 H 0.053 0.947 32 H 0.055 0.945 33 H 0.067 0.933 34 H 0.077 0.923 35 H 0.113 0.887 36 H 0.115 0.885 37 H 0.082 0.918 38 H 0.080 0.920 39 H 0.054 0.946 40 H 0.079 0.921 41 H 0.093 0.907 42 H 0.122 0.878 43 H 0.057 0.943 44 H 0.073 0.927 45 H 0.038 0.962 46 H 0.264 0.736 47 H 0.089 0.911 48 H 0.063 0.937 49 H 0.080 0.920 50 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.662 5.631 -10.828 29.322 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.148 4.148 3 C -0.179 4.179 4 C -0.182 4.182 5 C -0.125 4.125 6 C -0.078 4.078 7 N -0.225 5.225 8 C -0.002 4.002 9 C -0.135 4.135 10 N -0.052 5.052 11 H 0.312 0.688 12 N -0.093 5.093 13 C -0.161 4.161 14 C 0.398 3.602 15 O -0.460 6.460 16 N -0.366 5.366 17 C 0.004 3.996 18 C 0.004 3.996 19 C -0.567 4.567 20 H 0.088 0.912 21 C -0.179 4.179 22 N -0.557 5.557 23 Si 0.786 3.214 24 H -0.195 1.195 25 H -0.213 1.213 26 H -0.193 1.193 27 C -0.013 4.013 28 C -0.214 4.214 29 C -0.010 4.010 30 H 0.078 0.922 31 H 0.072 0.928 32 H 0.075 0.925 33 H 0.085 0.915 34 H 0.096 0.904 35 H 0.131 0.869 36 H 0.133 0.867 37 H 0.100 0.900 38 H 0.098 0.902 39 H 0.072 0.928 40 H 0.098 0.902 41 H 0.111 0.889 42 H 0.140 0.860 43 H 0.076 0.924 44 H 0.092 0.908 45 H 0.056 0.944 46 H 0.073 0.927 47 H 0.107 0.893 48 H 0.082 0.918 49 H 0.098 0.902 50 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -26.549 5.078 -10.517 29.004 hybrid contribution 0.841 0.609 0.530 1.166 sum -25.708 5.687 -9.987 28.160 Atomic orbital electron populations 1.21685 0.94746 1.01924 1.01903 1.20868 0.96441 0.94644 1.02890 1.22954 0.98671 0.97785 0.98506 1.22806 0.98597 0.99517 0.97326 1.20726 0.92644 0.99374 0.99803 1.22402 0.95429 0.93221 0.96717 1.65569 1.08750 1.45612 1.02538 1.21394 0.91652 1.00163 0.86996 1.22586 1.00492 1.04977 0.85463 1.42620 1.08015 1.45776 1.08771 0.68838 1.74002 0.98175 1.17733 1.19358 1.21034 0.95560 1.09636 0.89843 1.16846 0.81345 0.77389 0.84574 1.90684 1.81755 1.58647 1.14903 1.49842 1.14143 1.61949 1.10685 1.23221 0.98183 1.00178 0.77975 1.20208 0.91952 0.96531 0.90951 1.21172 1.30999 1.05650 0.98879 0.91236 1.25795 0.96832 0.96166 0.99143 1.70078 1.45806 1.22422 1.17347 0.85561 0.79338 0.78954 0.77499 1.19468 1.21251 1.19274 1.23314 0.78809 0.99715 0.99504 1.21120 0.93184 1.08179 0.98886 1.20804 0.87279 1.01511 0.91390 0.92243 0.92792 0.92546 0.91457 0.90439 0.86909 0.86660 0.89991 0.90201 0.92798 0.90241 0.88886 0.85971 0.92411 0.90850 0.94398 0.92694 0.89284 0.91805 0.90166 0.91599 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.31 9.89 71.98 0.71 -0.60 16 2 C -0.11 -1.16 6.04 29.84 0.18 -0.98 16 3 C -0.16 -1.72 9.51 25.65 0.24 -1.47 16 4 C -0.16 -1.69 9.51 25.65 0.24 -1.45 16 5 C -0.09 -0.93 5.43 29.85 0.16 -0.77 16 6 C 0.05 0.66 4.65 86.30 0.40 1.06 16 7 N -0.50 -9.04 5.47 -897.53 -4.91 -13.95 16 8 C 0.13 1.85 6.01 85.43 0.51 2.36 16 9 C -0.01 -0.13 8.26 41.53 0.34 0.21 16 10 N -0.34 -8.07 6.83 -47.68 -0.33 -8.40 16 11 H 0.46 6.90 8.96 -219.95 -1.97 4.93 16 12 N -0.26 -8.87 10.79 -48.39 -0.52 -9.39 16 13 C 0.00 -0.07 7.10 42.33 0.30 0.23 16 14 C 0.61 27.43 8.08 86.75 0.70 28.13 16 15 O -0.58 -28.10 17.70 -3.95 -0.07 -28.17 16 16 N -0.63 -28.77 3.69 -862.36 -3.18 -31.95 16 17 C 0.13 5.90 7.35 83.10 0.61 6.51 16 18 C 0.02 1.15 3.77 -11.28 -0.04 1.10 16 19 C -0.53 -27.65 8.82 25.60 0.23 -27.43 16 20 H 0.07 3.47 7.81 -2.91 -0.02 3.45 16 21 C 0.02 1.11 5.46 84.65 0.46 1.57 16 22 N -0.92 -51.59 13.26 21.45 0.28 -51.31 16 23 Si 0.96 41.50 29.54 68.60 2.03 43.53 16 24 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 25 H -0.29 -12.28 7.11 99.48 0.71 -11.57 16 26 H -0.27 -11.16 7.11 99.48 0.71 -10.46 16 27 C 0.11 4.80 8.19 83.19 0.68 5.48 16 28 C -0.20 -6.32 6.96 -19.81 -0.14 -6.46 16 29 C 0.12 3.02 6.59 85.33 0.56 3.58 16 30 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 31 H 0.05 0.49 8.14 -2.39 -0.02 0.47 16 32 H 0.06 0.47 8.14 -2.39 -0.02 0.45 16 33 H 0.07 0.72 8.14 -2.38 -0.02 0.70 16 34 H 0.08 0.83 5.28 -2.39 -0.01 0.82 16 35 H 0.11 1.06 8.06 -2.91 -0.02 1.03 16 36 H 0.12 1.02 8.06 -2.91 -0.02 0.99 16 37 H 0.08 0.98 5.30 -2.39 -0.01 0.97 16 38 H 0.08 0.69 7.73 -2.39 -0.02 0.67 16 39 H 0.05 0.62 7.66 -2.39 -0.02 0.61 16 40 H 0.08 1.14 8.08 -2.39 -0.02 1.12 16 41 H 0.09 0.99 7.50 -2.39 -0.02 0.97 16 42 H 0.12 1.18 8.14 -2.39 -0.02 1.16 16 43 H 0.06 2.77 7.51 -2.39 -0.02 2.75 16 44 H 0.07 3.36 8.10 -2.39 -0.02 3.34 16 45 H 0.04 2.10 8.11 -2.38 -0.02 2.08 16 46 H 0.26 14.12 8.31 -92.71 -0.77 13.34 16 47 H 0.09 3.68 8.10 -2.39 -0.02 3.66 16 48 H 0.06 2.73 8.14 -2.39 -0.02 2.71 16 49 H 0.08 2.29 8.14 -2.38 -0.02 2.27 16 50 H 0.07 1.59 7.80 -2.39 -0.02 1.58 16 Total: -1.00 -69.12 409.56 -1.56 -70.68 By element: Atomic # 1 Polarization: 18.91 SS G_CDS: -1.02 Total: 17.89 kcal Atomic # 6 Polarization: 4.91 SS G_CDS: 6.16 Total: 11.07 kcal Atomic # 7 Polarization: -106.34 SS G_CDS: -8.66 Total: -115.00 kcal Atomic # 8 Polarization: -28.10 SS G_CDS: -0.07 Total: -28.17 kcal Atomic # 14 Polarization: 41.50 SS G_CDS: 2.03 Total: 43.53 kcal Total: -69.12 -1.56 -70.68 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277530233.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 170.093 kcal (2) G-P(sol) polarization free energy of solvation -69.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.976 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.563 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.680 kcal (6) G-S(sol) free energy of system = (1) + (5) 99.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds