Wall clock time and date at job start Wed Apr 1 2020 03:59:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.36123 * 126.30689 * 2 1 4 4 N 1.30083 * 110.04060 * 179.97438 * 3 2 1 5 5 C 1.35861 * 109.53691 * 359.97438 * 4 3 2 6 6 C 1.39716 * 133.50769 * 180.02562 * 5 4 3 7 7 C 1.37840 * 120.10579 * 179.97438 * 6 5 4 8 8 C 1.38330 * 120.72726 * 359.77589 * 7 6 5 9 9 C 1.39396 * 120.27881 * 0.47804 * 8 7 6 10 10 C 1.47533 * 120.24558 * 179.78626 * 9 8 7 11 11 O 1.21591 * 119.99661 * 146.38416 * 10 9 8 12 12 N 1.34771 * 120.00042 * 326.66285 * 10 9 8 13 13 C 1.46503 * 120.00072 * 179.72823 * 12 10 9 14 14 H 1.09003 * 109.46845 * 324.99258 * 13 12 10 15 15 C 1.53004 * 109.47010 * 204.99612 * 13 12 10 16 16 N 1.46502 * 109.47212 * 54.99663 * 15 13 12 17 17 C 1.36934 * 120.00189 * 179.97438 * 16 15 13 18 18 H 1.08003 * 120.00140 * 359.97438 * 17 16 15 19 19 C 1.38811 * 119.99940 * 180.02562 * 17 16 15 20 20 N 1.31622 * 119.99755 * 180.02562 * 19 17 16 21 21 Si 1.86798 * 120.00305 * 359.97438 * 19 17 16 22 22 H 1.48500 * 109.47199 * 89.99968 * 21 19 17 23 23 H 1.48500 * 109.47283 * 210.00061 * 21 19 17 24 24 H 1.48499 * 109.47129 * 330.00443 * 21 19 17 25 25 C 1.52995 * 109.47589 * 84.99580 * 13 12 10 26 26 C 1.53003 * 109.46912 * 59.99785 * 25 13 12 27 27 C 1.52997 * 109.47419 * 179.97438 * 25 13 12 28 28 C 1.52999 * 109.46985 * 300.00407 * 25 13 12 29 29 C 1.37510 * 126.31017 * 179.97438 * 2 1 3 30 30 H 1.08997 * 109.46993 * 263.85332 * 1 2 3 31 31 H 1.08997 * 109.47071 * 23.86314 * 1 2 3 32 32 H 1.09008 * 109.46669 * 143.85994 * 1 2 3 33 33 H 1.07993 * 124.97754 * 359.96421 * 3 2 1 34 34 H 1.08004 * 119.94536 * 359.97438 * 6 5 4 35 35 H 1.08004 * 119.63578 * 180.02562 * 7 6 5 36 36 H 1.08003 * 119.85735 * 180.24589 * 8 7 6 37 37 H 0.97003 * 120.00386 * 359.71793 * 12 10 9 38 38 H 1.08998 * 109.47098 * 174.99577 * 15 13 12 39 39 H 1.08995 * 109.47401 * 294.99718 * 15 13 12 40 40 H 0.97009 * 120.00034 * 359.97438 * 16 15 13 41 41 H 0.97001 * 120.00052 * 180.02562 * 20 19 17 42 42 H 1.08999 * 109.47175 * 60.00843 * 26 25 13 43 43 H 1.09008 * 109.46889 * 180.02562 * 26 25 13 44 44 H 1.08994 * 109.47283 * 300.00184 * 26 25 13 45 45 H 1.09003 * 109.46813 * 59.99802 * 27 25 13 46 46 H 1.08995 * 109.46989 * 179.97438 * 27 25 13 47 47 H 1.08998 * 109.47158 * 300.00362 * 27 25 13 48 48 H 1.09002 * 109.47686 * 59.99456 * 28 25 13 49 49 H 1.08999 * 109.47091 * 180.02562 * 28 25 13 50 50 H 1.08999 * 109.47129 * 299.99588 * 28 25 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2710 1.0970 0.0000 4 7 3.5198 0.7326 0.0005 5 6 3.5973 -0.6238 0.0015 6 6 4.6639 -1.5263 0.0028 7 6 4.4214 -2.8832 0.0041 8 6 3.1265 -3.3698 0.0087 9 6 2.0451 -2.4902 0.0022 10 6 0.6644 -3.0101 0.0024 11 8 -0.2145 -2.4005 0.5805 12 7 0.3785 -4.1634 -0.6336 13 6 -0.9914 -4.6827 -0.6283 14 1 -1.4634 -4.4528 0.3269 15 6 -0.9629 -6.1989 -0.8312 16 7 -0.1021 -6.8113 0.1838 17 6 0.0770 -8.1688 0.2012 18 1 -0.4168 -8.7881 -0.5331 19 6 0.8922 -8.7491 1.1633 20 7 1.0646 -10.0538 1.1797 21 14 1.7456 -7.6782 2.4338 22 1 0.8696 -7.5282 3.6235 23 1 3.0251 -8.3141 2.8381 24 1 2.0202 -6.3408 1.8497 25 6 -1.7881 -4.0316 -1.7607 26 6 -1.1254 -4.3543 -3.1015 27 6 -3.2185 -4.5743 -1.7556 28 6 -1.8166 -2.5153 -1.5578 29 6 2.2793 -1.1081 0.0005 30 1 -0.3633 -0.1100 1.0217 31 1 -0.3633 0.9398 -0.4157 32 1 -0.3633 -0.8300 -0.6061 33 1 1.9245 2.1198 -0.0006 34 1 5.6799 -1.1601 0.0029 35 1 5.2516 -3.5741 0.0056 36 1 2.9527 -4.4358 0.0137 37 1 1.0797 -4.6497 -1.0949 38 1 -1.9733 -6.5969 -0.7388 39 1 -0.5725 -6.4255 -1.8233 40 1 0.3411 -6.2552 0.8436 41 1 1.6340 -10.4594 1.8522 42 1 -1.1051 -5.4344 -3.2461 43 1 -1.6928 -3.8900 -3.9082 44 1 -0.1063 -3.9679 -3.1054 45 1 -3.6908 -4.3448 -0.8003 46 1 -3.7861 -4.1101 -2.5620 47 1 -3.1978 -5.6545 -1.9003 48 1 -0.7973 -2.1289 -1.5617 49 1 -2.3845 -2.0515 -2.3643 50 1 -2.2886 -2.2854 -0.6026 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001278977662.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:59:36 Heat of formation + Delta-G solvation = 37.152235 kcal Electronic energy + Delta-G solvation = -31907.125425 eV Core-core repulsion = 27934.919828 eV Total energy + Delta-G solvation = -3972.205598 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -43.27418 -41.38967 -38.92390 -38.11103 -36.34471 -35.05642 -34.71857 -33.35370 -31.76691 -30.50676 -29.69440 -28.21015 -27.97883 -27.77062 -25.68322 -24.80002 -23.26024 -23.21417 -22.66404 -20.99227 -20.13054 -19.48534 -18.58519 -18.26177 -17.67134 -17.28809 -16.95389 -16.75859 -16.41488 -16.29671 -15.82892 -15.33776 -15.22196 -14.95145 -14.80511 -14.62217 -14.53893 -14.50771 -14.14032 -13.82320 -13.45260 -13.33016 -13.19092 -13.05276 -12.97154 -12.84175 -12.78260 -12.61358 -12.48355 -12.38435 -12.13069 -11.93741 -11.82207 -11.65870 -11.42888 -11.40286 -11.24669 -11.01374 -10.67936 -9.96389 -9.46827 -9.29933 -9.16841 -8.03108 -5.36073 -0.42842 0.40524 1.34074 1.38298 1.42425 1.44343 1.69855 1.97515 2.12979 2.45741 2.77412 3.23751 3.29648 3.43981 3.55911 3.70814 3.82435 3.91192 3.95196 4.00093 4.03352 4.28029 4.29718 4.31118 4.37295 4.44374 4.48526 4.60147 4.68043 4.75294 4.82317 4.83525 4.90198 4.96468 5.03458 5.04741 5.10418 5.12327 5.21918 5.22764 5.31387 5.35272 5.38376 5.42676 5.54183 5.59438 5.73669 5.76929 6.14709 6.20241 6.47357 6.78060 7.06716 7.12187 7.82087 8.00142 9.18202 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.009838 B = 0.004563 C = 0.003404 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2845.289512 B = 6134.301242 C = 8224.466594 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.075 3.925 2 N -0.486 5.486 3 C 0.266 3.734 4 N -0.527 5.527 5 C 0.013 3.987 6 C -0.044 4.044 7 C -0.132 4.132 8 C -0.072 4.072 9 C -0.142 4.142 10 C 0.558 3.442 11 O -0.554 6.554 12 N -0.701 5.701 13 C 0.155 3.845 14 H 0.071 0.929 15 C 0.146 3.854 16 N -0.756 5.756 17 C -0.228 4.228 18 H 0.063 0.937 19 C -0.055 4.055 20 N -0.980 5.980 21 Si 0.943 3.057 22 H -0.291 1.291 23 H -0.293 1.293 24 H -0.250 1.250 25 C -0.069 4.069 26 C -0.140 4.140 27 C -0.140 4.140 28 C -0.125 4.125 29 C 0.072 3.928 30 H 0.069 0.931 31 H 0.113 0.887 32 H 0.091 0.909 33 H 0.260 0.740 34 H 0.152 0.848 35 H 0.163 0.837 36 H 0.138 0.862 37 H 0.407 0.593 38 H 0.045 0.955 39 H 0.047 0.953 40 H 0.363 0.637 41 H 0.257 0.743 42 H 0.058 0.942 43 H 0.068 0.932 44 H 0.049 0.951 45 H 0.052 0.948 46 H 0.073 0.927 47 H 0.057 0.943 48 H 0.044 0.956 49 H 0.063 0.937 50 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.894 23.984 -7.905 25.269 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.174 5.174 3 C -0.019 4.019 4 N -0.246 5.246 5 C -0.105 4.105 6 C -0.063 4.063 7 C -0.152 4.152 8 C -0.092 4.092 9 C -0.148 4.148 10 C 0.346 3.654 11 O -0.435 6.435 12 N -0.351 5.351 13 C 0.050 3.950 14 H 0.089 0.911 15 C 0.020 3.980 16 N -0.401 5.401 17 C -0.359 4.359 18 H 0.081 0.919 19 C -0.246 4.246 20 N -0.631 5.631 21 Si 0.772 3.228 22 H -0.219 1.219 23 H -0.220 1.220 24 H -0.174 1.174 25 C -0.071 4.071 26 C -0.197 4.197 27 C -0.198 4.198 28 C -0.182 4.182 29 C -0.041 4.041 30 H 0.088 0.912 31 H 0.131 0.869 32 H 0.109 0.891 33 H 0.275 0.725 34 H 0.170 0.830 35 H 0.181 0.819 36 H 0.156 0.844 37 H 0.243 0.757 38 H 0.063 0.937 39 H 0.065 0.935 40 H 0.196 0.804 41 H 0.066 0.934 42 H 0.077 0.923 43 H 0.087 0.913 44 H 0.068 0.932 45 H 0.071 0.929 46 H 0.092 0.908 47 H 0.076 0.924 48 H 0.062 0.938 49 H 0.082 0.918 50 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -1.038 24.729 -7.593 25.889 hybrid contribution 0.147 -0.919 1.034 1.391 sum -0.891 23.809 -6.559 24.712 Atomic orbital electron populations 1.22575 0.73930 1.05543 1.04503 1.45453 1.08714 1.04793 1.58407 1.26311 0.84384 0.94809 0.96372 1.70498 1.19930 1.10264 1.23900 1.19408 0.92349 0.91054 1.07656 1.20747 0.98171 0.91437 0.95977 1.21145 0.96961 0.95095 1.01966 1.21434 0.92167 0.99423 0.96172 1.18875 0.93772 0.90342 1.11855 1.18210 0.87823 0.80875 0.78463 1.90736 1.48867 1.58586 1.45288 1.45927 1.11667 1.23370 1.54101 1.21226 0.81944 0.92342 0.99488 0.91130 1.21231 0.94568 0.89868 0.92362 1.42695 1.57530 1.03565 1.36357 1.19017 1.22451 0.83310 1.11127 0.91888 1.25341 1.01597 0.96422 1.01287 1.69857 1.44214 1.10558 1.38462 0.85596 0.77999 0.79497 0.79750 1.21855 1.21992 1.17436 1.20836 0.95690 0.96009 0.94541 1.21894 1.00255 1.01861 0.95670 1.21885 0.94269 1.01279 1.02334 1.21926 1.00894 0.93883 1.01456 1.18757 0.91979 0.88624 1.04734 0.91218 0.86869 0.89059 0.72483 0.83020 0.81911 0.84434 0.75682 0.93736 0.93533 0.80373 0.93375 0.92320 0.91294 0.93202 0.92868 0.90770 0.92381 0.93751 0.91789 0.92888 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.37 9.28 127.77 1.19 2.55 16 2 N -0.49 -10.82 3.19 -542.87 -1.73 -12.55 16 3 C 0.27 4.99 12.50 180.04 2.25 7.24 16 4 N -0.53 -13.30 11.28 -192.03 -2.17 -15.47 16 5 C 0.01 0.35 7.22 39.41 0.28 0.64 16 6 C -0.04 -1.00 10.09 22.53 0.23 -0.77 16 7 C -0.13 -2.83 9.99 22.20 0.22 -2.60 16 8 C -0.07 -1.83 9.32 22.57 0.21 -1.62 16 9 C -0.14 -3.99 5.81 -20.07 -0.12 -4.10 16 10 C 0.56 16.19 5.46 86.70 0.47 16.66 16 11 O -0.55 -17.18 10.16 -4.00 -0.04 -17.22 16 12 N -0.70 -19.41 3.54 -445.70 -1.58 -20.99 16 13 C 0.15 4.40 1.69 44.99 0.08 4.47 16 14 H 0.07 2.30 7.58 -2.39 -0.02 2.28 16 15 C 0.15 4.99 5.10 86.38 0.44 5.43 16 16 N -0.76 -33.18 5.24 -343.45 -1.80 -34.98 16 17 C -0.23 -12.43 10.47 84.03 0.88 -11.55 16 18 H 0.06 3.74 8.06 -2.91 -0.02 3.72 16 19 C -0.05 -3.13 5.50 84.86 0.47 -2.66 16 20 N -0.98 -61.49 13.97 21.65 0.30 -61.18 16 21 Si 0.94 45.01 27.74 68.60 1.90 46.91 16 22 H -0.29 -14.16 7.11 99.48 0.71 -13.45 16 23 H -0.29 -14.10 7.11 99.48 0.71 -13.40 16 24 H -0.25 -10.61 6.52 99.48 0.65 -9.96 16 25 C -0.07 -1.54 0.62 -52.18 -0.03 -1.57 16 26 C -0.14 -2.84 7.97 71.98 0.57 -2.27 16 27 C -0.14 -2.86 8.12 71.98 0.58 -2.27 16 28 C -0.12 -2.61 6.37 71.98 0.46 -2.16 16 29 C 0.07 1.97 6.73 39.26 0.26 2.23 16 30 H 0.07 1.46 7.66 -2.39 -0.02 1.44 16 31 H 0.11 1.11 8.13 -2.39 -0.02 1.09 16 32 H 0.09 1.96 3.19 -2.38 -0.01 1.95 16 33 H 0.26 1.89 8.06 -2.91 -0.02 1.87 16 34 H 0.15 2.72 8.06 -2.91 -0.02 2.70 16 35 H 0.16 2.55 8.06 -2.91 -0.02 2.52 16 36 H 0.14 3.46 7.49 -2.91 -0.02 3.44 16 37 H 0.41 10.92 7.66 -92.71 -0.71 10.21 16 38 H 0.04 1.56 6.71 -2.39 -0.02 1.55 16 39 H 0.05 1.55 6.17 -2.39 -0.01 1.53 16 40 H 0.36 15.80 5.20 -92.70 -0.48 15.32 16 41 H 0.26 15.47 8.31 -92.71 -0.77 14.70 16 42 H 0.06 1.28 6.32 -2.39 -0.02 1.26 16 43 H 0.07 1.18 8.14 -2.38 -0.02 1.16 16 44 H 0.05 1.04 7.60 -2.39 -0.02 1.03 16 45 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 46 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 47 H 0.06 1.27 6.54 -2.39 -0.02 1.25 16 48 H 0.04 1.01 4.04 -2.39 -0.01 1.00 16 49 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 50 H 0.05 1.23 7.53 -2.39 -0.02 1.22 16 Total: -1.00 -73.08 383.02 3.07 -70.01 By element: Atomic # 1 Polarization: 38.08 SS G_CDS: -0.26 Total: 37.82 kcal Atomic # 6 Polarization: -0.79 SS G_CDS: 8.45 Total: 7.65 kcal Atomic # 7 Polarization: -138.20 SS G_CDS: -6.98 Total: -145.18 kcal Atomic # 8 Polarization: -17.18 SS G_CDS: -0.04 Total: -17.22 kcal Atomic # 14 Polarization: 45.01 SS G_CDS: 1.90 Total: 46.91 kcal Total: -73.08 3.07 -70.01 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278977662.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.159 kcal (2) G-P(sol) polarization free energy of solvation -73.077 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.071 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.007 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.152 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds