Wall clock time and date at job start Wed Apr 1 2020 03:58:30
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52995 * 1
3 3 C 1.52998 * 109.47219 * 2 1
4 4 C 1.53004 * 109.47121 * 180.02562 * 3 2 1
5 5 C 1.53007 * 109.46793 * 180.02562 * 4 3 2
6 6 H 1.08996 * 109.47194 * 55.00391 * 5 4 3
7 7 C 1.53006 * 109.46774 * 174.99922 * 5 4 3
8 8 N 1.46494 * 109.47053 * 174.99841 * 7 5 4
9 9 C 1.36939 * 119.99947 * 179.97438 * 8 7 5
10 10 H 1.07998 * 119.99895 * 359.97438 * 9 8 7
11 11 C 1.38810 * 119.99921 * 179.97438 * 9 8 7
12 12 N 1.31616 * 120.00054 * 180.02562 * 11 9 8
13 13 Si 1.86804 * 119.99940 * 0.02562 * 11 9 8
14 14 H 1.48498 * 109.47187 * 90.00112 * 13 11 9
15 15 H 1.48499 * 109.47090 * 209.99650 * 13 11 9
16 16 H 1.48499 * 109.47311 * 330.00027 * 13 11 9
17 17 N 1.46495 * 109.46922 * 294.99350 * 5 4 3
18 18 C 1.34780 * 119.99795 * 85.00528 * 17 5 4
19 19 O 1.21777 * 120.00122 * 359.97438 * 18 17 5
20 20 C 1.46285 * 120.00342 * 179.97438 * 18 17 5
21 21 N 1.34889 * 126.49451 * 0.03217 * 20 18 17
22 22 C 1.30177 * 109.73612 * 179.97438 * 21 20 18
23 23 C 1.50694 * 125.09151 * 180.26479 * 22 21 20
24 24 N 1.36255 * 109.81866 * 359.97438 * 22 21 20
25 25 C 1.36536 * 132.78045 * 180.02562 * 24 22 21
26 26 C 1.35025 * 120.59446 * 179.97438 * 25 24 22
27 27 C 1.40389 * 120.44342 * 359.95179 * 26 25 24
28 28 C 1.36339 * 119.55898 * 0.03058 * 27 26 25
29 29 C 1.37264 * 107.18319 * 359.97438 * 24 22 21
30 30 H 1.09002 * 109.47168 * 59.99986 * 1 2 3
31 31 H 1.09002 * 109.47043 * 179.97438 * 1 2 3
32 32 H 1.09005 * 109.47223 * 299.99979 * 1 2 3
33 33 H 1.09005 * 109.47223 * 240.00021 * 2 1 3
34 34 H 1.09002 * 109.47168 * 120.00014 * 2 1 3
35 35 H 1.08998 * 109.47166 * 60.00247 * 3 2 1
36 36 H 1.09003 * 109.47584 * 300.00139 * 3 2 1
37 37 H 1.08993 * 109.47319 * 60.00344 * 4 3 2
38 38 H 1.09001 * 109.46630 * 299.99696 * 4 3 2
39 39 H 1.09001 * 109.47135 * 294.99901 * 7 5 4
40 40 H 1.08995 * 109.47166 * 54.99503 * 7 5 4
41 41 H 0.96996 * 120.00215 * 0.02562 * 8 7 5
42 42 H 0.97008 * 120.00287 * 180.02562 * 12 11 9
43 43 H 0.96995 * 120.00637 * 265.00425 * 17 5 4
44 44 H 1.09008 * 109.47016 * 269.69055 * 23 22 21
45 45 H 1.08999 * 109.47356 * 29.69276 * 23 22 21
46 46 H 1.08996 * 109.47363 * 149.69511 * 23 22 21
47 47 H 1.07992 * 119.70096 * 359.97224 * 25 24 22
48 48 H 1.07996 * 119.77828 * 179.97438 * 26 25 24
49 49 H 1.08003 * 120.22138 * 180.02562 * 27 26 25
50 50 H 1.07998 * 120.39835 * 180.02562 * 28 27 26
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 6 3.5700 1.4424 -0.0006
5 6 4.0800 2.8850 0.0000
6 1 3.6458 3.4235 0.8423
7 6 5.6049 2.8868 0.1251
8 7 6.1031 4.2592 0.0059
9 6 7.4469 4.5094 0.0877
10 1 8.1395 3.6949 0.2405
11 6 7.9190 5.8098 -0.0258
12 7 9.2107 6.0502 0.0523
13 14 6.7210 7.2187 -0.2893
14 1 6.2896 7.7543 1.0268
15 1 7.3857 8.2945 -1.0677
16 1 5.5355 6.7272 -1.0364
17 7 3.6920 3.5406 -1.2513
18 6 2.4746 4.1076 -1.3657
19 8 1.6971 4.0745 -0.4290
20 6 2.0873 4.7628 -2.6149
21 7 2.8398 4.8753 -3.7287
22 6 2.1755 5.5185 -4.6450
23 6 2.6879 5.8323 -6.0270
24 7 0.9451 5.8600 -4.1696
25 6 -0.1099 6.5279 -4.7219
26 6 -1.2400 6.7343 -4.0125
27 6 -1.3483 6.2639 -2.6942
28 6 -0.3023 5.5951 -2.1307
29 6 0.8633 5.3908 -2.8822
30 1 -0.3633 0.5138 -0.8900
31 1 -0.3633 -1.0277 -0.0005
32 1 -0.3634 0.5138 0.8900
33 1 1.8933 -0.5138 -0.8900
34 1 1.8933 -0.5138 0.8900
35 1 1.6767 1.9563 0.8900
36 1 1.6767 1.9564 -0.8900
37 1 3.9330 0.9288 -0.8908
38 1 3.9336 0.9285 0.8892
39 1 5.8904 2.4796 1.0951
40 1 6.0351 2.2740 -0.6670
41 1 5.4810 4.9909 -0.1302
42 1 9.5406 6.9590 -0.0266
43 1 4.3111 3.5667 -1.9975
44 1 3.1918 6.7989 -6.0169
45 1 3.3907 5.0594 -6.3381
46 1 1.8519 5.8657 -6.7255
47 1 -0.0398 6.8943 -5.7354
48 1 -2.0663 7.2646 -4.4622
49 1 -2.2540 6.4307 -2.1301
50 1 -0.3710 5.2270 -1.1177
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001282642287.mol2 50
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 03:58:30
Heat of formation + Delta-G solvation = 45.957580 kcal
Electronic energy + Delta-G solvation = -30708.944731 eV
Core-core repulsion = 26737.120962 eV
Total energy + Delta-G solvation = -3971.823769 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 344.195 amu
Computer time = 0.89 seconds
Orbital eigenvalues (eV)
-43.04897 -39.54692 -37.74297 -36.50257 -34.93345 -33.76576 -33.47149 -31.80568
-31.41424 -30.63490 -30.10917 -27.65311 -26.89848 -24.27126 -24.10127 -23.67143
-21.89200 -21.38327 -20.76160 -20.65375 -20.01609 -18.09083 -17.55283 -17.07288
-16.42376 -16.31538 -16.07695 -15.78435 -15.17664 -14.78871 -14.69841 -14.36884
-14.07483 -13.94281 -13.51047 -13.42843 -13.36736 -12.98740 -12.88663 -12.70550
-12.66061 -12.49026 -12.08811 -12.00495 -11.95780 -11.86734 -11.36123 -11.28170
-10.96328 -10.86839 -10.81407 -10.77021 -10.57365 -10.27834 -10.23196 -10.02544
-9.71536 -9.59482 -9.54864 -8.86769 -8.61471 -7.63874 -7.18845 -5.72541
-3.07535 0.40965 0.84760 2.22254 2.28062 3.02695 3.43628 3.49027
3.50487 3.51880 3.74123 4.06297 4.13756 4.35665 4.48993 4.64621
4.65247 4.77614 4.83060 5.07837 5.08697 5.11316 5.22479 5.26014
5.34325 5.38456 5.47091 5.50405 5.54840 5.58256 5.60867 5.77367
5.80571 5.84987 5.91030 5.94800 5.97608 6.04854 6.14639 6.20896
6.23259 6.26563 6.28113 6.49277 6.51063 6.66069 6.71643 6.85075
6.97690 7.51406 7.98481 8.03698 8.46347 8.57107 9.26049 9.98768
10.18481 11.45800
Molecular weight = 344.20amu
Principal moments of inertia in cm(-1)
A = 0.007319 B = 0.004470 C = 0.003119
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 3824.753213 B = 6263.146101 C = 8976.420451
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.149 4.149
2 C -0.125 4.125
3 C -0.112 4.112
4 C -0.126 4.126
5 C 0.134 3.866
6 H 0.088 0.912
7 C 0.149 3.851
8 N -0.754 5.754
9 C -0.243 4.243
10 H 0.091 0.909
11 C 0.008 3.992
12 N -0.934 5.934
13 Si 0.880 3.120
14 H -0.285 1.285
15 H -0.292 1.292
16 H -0.276 1.276
17 N -0.698 5.698
18 C 0.605 3.395
19 O -0.547 6.547
20 C -0.053 4.053
21 N -0.409 5.409
22 C 0.167 3.833
23 C -0.064 4.064
24 N -0.363 5.363
25 C 0.048 3.952
26 C -0.132 4.132
27 C -0.121 4.121
28 C -0.063 4.063
29 C 0.071 3.929
30 H 0.050 0.950
31 H 0.047 0.953
32 H 0.053 0.947
33 H 0.055 0.945
34 H 0.057 0.943
35 H 0.066 0.934
36 H 0.063 0.937
37 H 0.063 0.937
38 H 0.072 0.928
39 H 0.042 0.958
40 H 0.033 0.967
41 H 0.363 0.637
42 H 0.259 0.741
43 H 0.411 0.589
44 H 0.082 0.918
45 H 0.096 0.904
46 H 0.072 0.928
47 H 0.166 0.834
48 H 0.150 0.850
49 H 0.141 0.859
50 H 0.160 0.840
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -24.890 -3.580 -11.545 27.670
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.206 4.206
2 C -0.163 4.163
3 C -0.149 4.149
4 C -0.165 4.165
5 C 0.030 3.970
6 H 0.106 0.894
7 C 0.022 3.978
8 N -0.400 5.400
9 C -0.372 4.372
10 H 0.109 0.891
11 C -0.188 4.188
12 N -0.582 5.582
13 Si 0.710 3.290
14 H -0.212 1.212
15 H -0.218 1.218
16 H -0.202 1.202
17 N -0.348 5.348
18 C 0.392 3.608
19 O -0.426 6.426
20 C -0.188 4.188
21 N -0.124 5.124
22 C -0.090 4.090
23 C -0.122 4.122
24 N -0.034 5.034
25 C -0.073 4.073
26 C -0.153 4.153
27 C -0.142 4.142
28 C -0.083 4.083
29 C -0.041 4.041
30 H 0.069 0.931
31 H 0.066 0.934
32 H 0.072 0.928
33 H 0.074 0.926
34 H 0.076 0.924
35 H 0.085 0.915
36 H 0.082 0.918
37 H 0.082 0.918
38 H 0.090 0.910
39 H 0.060 0.940
40 H 0.050 0.950
41 H 0.196 0.804
42 H 0.069 0.931
43 H 0.247 0.753
44 H 0.101 0.899
45 H 0.115 0.885
46 H 0.091 0.909
47 H 0.184 0.816
48 H 0.168 0.832
49 H 0.158 0.842
50 H 0.178 0.822
Dipole moment (debyes) X Y Z Total
from point charges -24.249 -3.965 -11.051 26.941
hybrid contribution -1.195 1.598 -0.570 2.075
sum -25.443 -2.366 -11.621 28.071
Atomic orbital electron populations
1.21736 0.96352 1.00780 1.01751 1.21570 0.95539 0.97792 1.01377
1.21667 0.94782 0.95304 1.03193 1.21968 0.96113 0.96052 1.02363
1.21398 0.96075 0.92805 0.86745 0.89358 1.20943 0.89055 0.88301
0.99531 1.42700 1.05362 1.02644 1.89339 1.19052 0.82093 0.94209
1.41874 0.89107 1.24616 0.95432 0.96858 1.01896 1.69700 1.11391
1.19866 1.57266 0.86606 0.81082 0.83320 0.77989 1.21175 1.21797
1.20160 1.45796 1.15697 1.56006 1.17296 1.16402 0.82169 0.77585
0.84686 1.90781 1.51932 1.60883 1.39009 1.20611 0.91552 1.10801
0.95806 1.70075 1.29252 1.13804 0.99315 1.23374 0.81526 1.04917
0.99172 1.20202 1.01525 1.03967 0.86512 1.42878 1.12520 1.36065
1.11977 1.21645 0.86900 0.98587 1.00199 1.20890 0.97270 1.01920
0.95248 1.21206 0.99454 0.98450 0.95096 1.20832 0.89531 0.97140
1.00786 1.19261 0.97472 1.02091 0.85270 0.93094 0.93361 0.92808
0.92628 0.92377 0.91496 0.91792 0.91804 0.90953 0.93973 0.94953
0.80357 0.93122 0.75294 0.89904 0.88520 0.90884 0.81625 0.83237
0.84152 0.82243
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.58 9.91 37.16 0.37 -1.22 16
2 C -0.13 -1.45 5.93 -26.73 -0.16 -1.61 16
3 C -0.11 -1.55 3.81 -26.73 -0.10 -1.65 16
4 C -0.13 -1.76 4.89 -26.73 -0.13 -1.89 16
5 C 0.13 2.28 2.42 -67.93 -0.16 2.12 16
6 H 0.09 1.63 7.58 -51.93 -0.39 1.23 16
7 C 0.15 2.93 5.82 -4.04 -0.02 2.91 16
8 N -0.75 -18.57 5.24 -59.91 -0.31 -18.89 16
9 C -0.24 -7.03 10.47 -15.06 -0.16 -7.19 16
10 H 0.09 2.78 8.06 -52.49 -0.42 2.36 16
11 C 0.01 0.23 5.50 -17.43 -0.10 0.14 16
12 N -0.93 -29.99 13.97 55.49 0.78 -29.21 16
13 Si 0.88 23.40 27.74 -169.99 -4.71 18.68 16
14 H -0.29 -7.58 7.11 56.52 0.40 -7.18 16
15 H -0.29 -7.77 7.11 56.52 0.40 -7.36 16
16 H -0.28 -7.17 6.52 56.52 0.37 -6.80 16
17 N -0.70 -12.28 4.47 -55.22 -0.25 -12.53 16
18 C 0.60 10.82 6.34 -13.02 -0.08 10.74 16
19 O -0.55 -10.11 12.88 5.12 0.07 -10.04 16
20 C -0.05 -0.90 7.05 -82.58 -0.58 -1.48 16
21 N -0.41 -6.72 10.90 -6.75 -0.07 -6.79 16
22 C 0.17 2.17 7.94 -154.57 -1.23 0.95 16
23 C -0.06 -0.53 10.32 36.00 0.37 -0.16 16
24 N -0.36 -4.39 2.94 -57.94 -0.17 -4.56 16
25 C 0.05 0.38 10.77 -16.60 -0.18 0.21 16
26 C -0.13 -0.90 9.98 -39.91 -0.40 -1.30 16
27 C -0.12 -1.02 10.08 -39.46 -0.40 -1.41 16
28 C -0.06 -0.76 9.73 -39.54 -0.38 -1.14 16
29 C 0.07 1.03 6.72 -83.99 -0.56 0.47 16
30 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16
31 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16
32 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16
33 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16
34 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16
35 H 0.07 1.00 7.84 -51.93 -0.41 0.59 16
36 H 0.06 1.00 5.65 -51.93 -0.29 0.70 16
37 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16
38 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16
39 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16
40 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16
41 H 0.36 9.10 5.20 -40.82 -0.21 8.89 16
42 H 0.26 7.92 8.31 -40.82 -0.34 7.58 16
43 H 0.41 7.45 8.30 -40.82 -0.34 7.11 16
44 H 0.08 0.64 8.14 -51.92 -0.42 0.22 16
45 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16
46 H 0.07 0.39 7.99 -51.93 -0.42 -0.03 16
47 H 0.17 0.69 7.94 -52.49 -0.42 0.28 16
48 H 0.15 0.49 8.06 -52.49 -0.42 0.07 16
49 H 0.14 0.79 8.06 -52.48 -0.42 0.37 16
50 H 0.16 1.95 7.17 -52.49 -0.38 1.58 16
LS Contribution 406.27 15.07 6.12 6.12
Total: -1.00 -36.08 406.27 -10.41 -46.48
By element:
Atomic # 1 Polarization: 20.19 SS G_CDS: -7.94 Total: 12.24 kcal
Atomic # 6 Polarization: 2.38 SS G_CDS: -3.91 Total: -1.52 kcal
Atomic # 7 Polarization: -71.94 SS G_CDS: -0.03 Total: -71.97 kcal
Atomic # 8 Polarization: -10.11 SS G_CDS: 0.07 Total: -10.04 kcal
Atomic # 14 Polarization: 23.40 SS G_CDS: -4.71 Total: 18.68 kcal
Total LS contribution 6.12 Total: 6.12 kcal
Total: -36.08 -10.41 -46.48 kcal
The number of atoms in the molecule is 50
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001282642287.mol2 50
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 92.443 kcal
(2) G-P(sol) polarization free energy of solvation -36.080 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.363 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.405 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.485 kcal
(6) G-S(sol) free energy of system = (1) + (5) 45.958 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.89 seconds