Wall clock time and date at job start Wed Apr 1 2020 03:58:29
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52995 * 1
3 3 C 1.52998 * 109.47219 * 2 1
4 4 C 1.53004 * 109.47121 * 180.02562 * 3 2 1
5 5 C 1.53007 * 109.46793 * 180.02562 * 4 3 2
6 6 H 1.08996 * 109.47194 * 55.00391 * 5 4 3
7 7 C 1.53006 * 109.46774 * 174.99922 * 5 4 3
8 8 N 1.46494 * 109.47053 * 174.99841 * 7 5 4
9 9 C 1.36939 * 119.99947 * 179.97438 * 8 7 5
10 10 H 1.07998 * 119.99895 * 359.97438 * 9 8 7
11 11 C 1.38810 * 119.99921 * 179.97438 * 9 8 7
12 12 N 1.31616 * 120.00054 * 180.02562 * 11 9 8
13 13 Si 1.86804 * 119.99940 * 0.02562 * 11 9 8
14 14 H 1.48498 * 109.47187 * 90.00112 * 13 11 9
15 15 H 1.48499 * 109.47090 * 209.99650 * 13 11 9
16 16 H 1.48499 * 109.47311 * 330.00027 * 13 11 9
17 17 N 1.46495 * 109.46922 * 294.99350 * 5 4 3
18 18 C 1.34780 * 119.99795 * 85.00528 * 17 5 4
19 19 O 1.21777 * 120.00122 * 359.97438 * 18 17 5
20 20 C 1.46285 * 120.00342 * 179.97438 * 18 17 5
21 21 N 1.34889 * 126.49451 * 0.03217 * 20 18 17
22 22 C 1.30177 * 109.73612 * 179.97438 * 21 20 18
23 23 C 1.50694 * 125.09151 * 180.26479 * 22 21 20
24 24 N 1.36255 * 109.81866 * 359.97438 * 22 21 20
25 25 C 1.36536 * 132.78045 * 180.02562 * 24 22 21
26 26 C 1.35025 * 120.59446 * 179.97438 * 25 24 22
27 27 C 1.40389 * 120.44342 * 359.95179 * 26 25 24
28 28 C 1.36339 * 119.55898 * 0.03058 * 27 26 25
29 29 C 1.37264 * 107.18319 * 359.97438 * 24 22 21
30 30 H 1.09002 * 109.47168 * 59.99986 * 1 2 3
31 31 H 1.09002 * 109.47043 * 179.97438 * 1 2 3
32 32 H 1.09005 * 109.47223 * 299.99979 * 1 2 3
33 33 H 1.09005 * 109.47223 * 240.00021 * 2 1 3
34 34 H 1.09002 * 109.47168 * 120.00014 * 2 1 3
35 35 H 1.08998 * 109.47166 * 60.00247 * 3 2 1
36 36 H 1.09003 * 109.47584 * 300.00139 * 3 2 1
37 37 H 1.08993 * 109.47319 * 60.00344 * 4 3 2
38 38 H 1.09001 * 109.46630 * 299.99696 * 4 3 2
39 39 H 1.09001 * 109.47135 * 294.99901 * 7 5 4
40 40 H 1.08995 * 109.47166 * 54.99503 * 7 5 4
41 41 H 0.96996 * 120.00215 * 0.02562 * 8 7 5
42 42 H 0.97008 * 120.00287 * 180.02562 * 12 11 9
43 43 H 0.96995 * 120.00637 * 265.00425 * 17 5 4
44 44 H 1.09008 * 109.47016 * 269.69055 * 23 22 21
45 45 H 1.08999 * 109.47356 * 29.69276 * 23 22 21
46 46 H 1.08996 * 109.47363 * 149.69511 * 23 22 21
47 47 H 1.07992 * 119.70096 * 359.97224 * 25 24 22
48 48 H 1.07996 * 119.77828 * 179.97438 * 26 25 24
49 49 H 1.08003 * 120.22138 * 180.02562 * 27 26 25
50 50 H 1.07998 * 120.39835 * 180.02562 * 28 27 26
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 6 3.5700 1.4424 -0.0006
5 6 4.0800 2.8850 0.0000
6 1 3.6458 3.4235 0.8423
7 6 5.6049 2.8868 0.1251
8 7 6.1031 4.2592 0.0059
9 6 7.4469 4.5094 0.0877
10 1 8.1395 3.6949 0.2405
11 6 7.9190 5.8098 -0.0258
12 7 9.2107 6.0502 0.0523
13 14 6.7210 7.2187 -0.2893
14 1 6.2896 7.7543 1.0268
15 1 7.3857 8.2945 -1.0677
16 1 5.5355 6.7272 -1.0364
17 7 3.6920 3.5406 -1.2513
18 6 2.4746 4.1076 -1.3657
19 8 1.6971 4.0745 -0.4290
20 6 2.0873 4.7628 -2.6149
21 7 2.8398 4.8753 -3.7287
22 6 2.1755 5.5185 -4.6450
23 6 2.6879 5.8323 -6.0270
24 7 0.9451 5.8600 -4.1696
25 6 -0.1099 6.5279 -4.7219
26 6 -1.2400 6.7343 -4.0125
27 6 -1.3483 6.2639 -2.6942
28 6 -0.3023 5.5951 -2.1307
29 6 0.8633 5.3908 -2.8822
30 1 -0.3633 0.5138 -0.8900
31 1 -0.3633 -1.0277 -0.0005
32 1 -0.3634 0.5138 0.8900
33 1 1.8933 -0.5138 -0.8900
34 1 1.8933 -0.5138 0.8900
35 1 1.6767 1.9563 0.8900
36 1 1.6767 1.9564 -0.8900
37 1 3.9330 0.9288 -0.8908
38 1 3.9336 0.9285 0.8892
39 1 5.8904 2.4796 1.0951
40 1 6.0351 2.2740 -0.6670
41 1 5.4810 4.9909 -0.1302
42 1 9.5406 6.9590 -0.0266
43 1 4.3111 3.5667 -1.9975
44 1 3.1918 6.7989 -6.0169
45 1 3.3907 5.0594 -6.3381
46 1 1.8519 5.8657 -6.7255
47 1 -0.0398 6.8943 -5.7354
48 1 -2.0663 7.2646 -4.4622
49 1 -2.2540 6.4307 -2.1301
50 1 -0.3710 5.2270 -1.1177
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001282642287.mol2 50
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 03:58:29
Heat of formation + Delta-G solvation = 22.806757 kcal
Electronic energy + Delta-G solvation = -30709.948626 eV
Core-core repulsion = 26737.120962 eV
Total energy + Delta-G solvation = -3972.827664 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 344.195 amu
Computer time = 1.02 seconds
Orbital eigenvalues (eV)
-43.94152 -40.85324 -38.55898 -37.92692 -36.36288 -35.11983 -34.63660 -33.32249
-32.58031 -31.99856 -30.92791 -29.06660 -27.89335 -25.81078 -24.96963 -24.67020
-23.57182 -22.21289 -22.09969 -21.78663 -21.29119 -19.83971 -18.93626 -17.98061
-17.42238 -17.29518 -17.22318 -16.74994 -16.49154 -16.24341 -15.89330 -15.72619
-15.45078 -15.07431 -14.86757 -14.56056 -14.48572 -14.32711 -14.07054 -13.95845
-13.70068 -13.47963 -13.31700 -13.12103 -12.99378 -12.95635 -12.72880 -12.63182
-12.60981 -12.19494 -11.99694 -11.91394 -11.87481 -11.70979 -11.60777 -11.45999
-11.36771 -11.10342 -10.95617 -10.42675 -9.97460 -9.34672 -8.52516 -8.07691
-5.39387 -0.39057 0.04846 1.21240 1.29655 1.30388 1.38261 1.40495
2.23528 2.27972 2.40801 2.58280 3.20309 3.25014 3.39768 3.46097
3.66138 3.75154 3.84319 3.90029 4.06212 4.07823 4.14192 4.18878
4.28765 4.31299 4.50100 4.50876 4.58041 4.66536 4.70503 4.80494
4.82092 4.88035 4.92391 4.96475 4.97763 5.05229 5.09784 5.12795
5.18452 5.21689 5.27775 5.32303 5.41072 5.50729 5.56909 5.62233
5.72288 6.08484 6.16878 6.44267 6.73114 7.02127 7.26001 7.78611
7.96655 9.13936
Molecular weight = 344.20amu
Principal moments of inertia in cm(-1)
A = 0.007319 B = 0.004470 C = 0.003119
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 3824.753213 B = 6263.146101 C = 8976.420451
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.147 4.147
2 C -0.121 4.121
3 C -0.103 4.103
4 C -0.118 4.118
5 C 0.144 3.856
6 H 0.071 0.929
7 C 0.149 3.851
8 N -0.758 5.758
9 C -0.229 4.229
10 H 0.068 0.932
11 C -0.052 4.052
12 N -0.978 5.978
13 Si 0.944 3.056
14 H -0.282 1.282
15 H -0.289 1.289
16 H -0.272 1.272
17 N -0.703 5.703
18 C 0.602 3.398
19 O -0.567 6.567
20 C -0.119 4.119
21 N -0.448 5.448
22 C 0.160 3.840
23 C -0.061 4.061
24 N -0.365 5.365
25 C 0.049 3.951
26 C -0.130 4.130
27 C -0.082 4.082
28 C -0.116 4.116
29 C 0.074 3.926
30 H 0.041 0.959
31 H 0.066 0.934
32 H 0.050 0.950
33 H 0.060 0.940
34 H 0.070 0.930
35 H 0.051 0.949
36 H 0.042 0.958
37 H 0.070 0.930
38 H 0.089 0.911
39 H 0.051 0.949
40 H 0.040 0.960
41 H 0.362 0.638
42 H 0.259 0.741
43 H 0.406 0.594
44 H 0.090 0.910
45 H 0.092 0.908
46 H 0.110 0.890
47 H 0.212 0.788
48 H 0.200 0.800
49 H 0.174 0.826
50 H 0.142 0.858
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -28.669 -2.683 -13.777 31.921
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.204 4.204
2 C -0.159 4.159
3 C -0.140 4.140
4 C -0.156 4.156
5 C 0.040 3.960
6 H 0.089 0.911
7 C 0.022 3.978
8 N -0.403 5.403
9 C -0.359 4.359
10 H 0.086 0.914
11 C -0.244 4.244
12 N -0.628 5.628
13 Si 0.773 3.227
14 H -0.209 1.209
15 H -0.216 1.216
16 H -0.198 1.198
17 N -0.353 5.353
18 C 0.391 3.609
19 O -0.447 6.447
20 C -0.251 4.251
21 N -0.164 5.164
22 C -0.098 4.098
23 C -0.119 4.119
24 N -0.036 5.036
25 C -0.072 4.072
26 C -0.150 4.150
27 C -0.103 4.103
28 C -0.136 4.136
29 C -0.040 4.040
30 H 0.061 0.939
31 H 0.085 0.915
32 H 0.070 0.930
33 H 0.079 0.921
34 H 0.089 0.911
35 H 0.069 0.931
36 H 0.061 0.939
37 H 0.089 0.911
38 H 0.108 0.892
39 H 0.069 0.931
40 H 0.058 0.942
41 H 0.194 0.806
42 H 0.068 0.932
43 H 0.241 0.759
44 H 0.108 0.892
45 H 0.111 0.889
46 H 0.129 0.871
47 H 0.229 0.771
48 H 0.217 0.783
49 H 0.191 0.809
50 H 0.160 0.840
Dipole moment (debyes) X Y Z Total
from point charges -28.051 -3.111 -13.273 31.188
hybrid contribution -0.229 1.358 0.025 1.377
sum -28.280 -1.753 -13.249 31.279
Atomic orbital electron populations
1.21718 0.95652 1.01820 1.01236 1.21541 0.96182 0.95966 1.02194
1.21526 0.94456 0.96665 1.01379 1.21917 0.96251 0.93969 1.03493
1.21262 0.93929 0.94564 0.86289 0.91064 1.21117 0.90896 0.85790
0.99967 1.42739 1.03726 1.04703 1.89174 1.19085 0.83598 0.93508
1.39754 0.91439 1.25269 0.96879 0.99327 1.02916 1.69839 1.13214
1.20356 1.59431 0.85570 0.78983 0.80286 0.77825 1.20895 1.21557
1.19801 1.45794 1.15839 1.56614 1.17008 1.16650 0.81792 0.77218
0.85255 1.90736 1.52305 1.61822 1.39874 1.20462 0.93665 1.14891
0.96107 1.69943 1.30789 1.15549 1.00070 1.24165 0.81687 1.03915
1.00021 1.20401 1.02881 1.04022 0.84596 1.43113 1.13261 1.36054
1.11126 1.22675 0.85739 0.96659 1.02137 1.21527 0.98192 1.01075
0.94193 1.21763 0.98745 0.94012 0.95813 1.20818 0.90690 1.01217
1.00836 1.19465 0.97157 1.00893 0.86507 0.93947 0.91475 0.93046
0.92122 0.91130 0.93052 0.93925 0.91087 0.89209 0.93142 0.94219
0.80575 0.93241 0.75878 0.89179 0.88884 0.87124 0.77117 0.78324
0.80866 0.84003
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -3.03 9.91 71.98 0.71 -2.32 16
2 C -0.12 -2.72 5.93 30.59 0.18 -2.54 16
3 C -0.10 -2.92 3.81 30.60 0.12 -2.80 16
4 C -0.12 -3.32 4.89 30.60 0.15 -3.17 16
5 C 0.14 5.09 2.42 45.00 0.11 5.19 16
6 H 0.07 2.76 7.58 -2.39 -0.02 2.74 16
7 C 0.15 5.95 5.82 86.38 0.50 6.46 16
8 N -0.76 -38.14 5.24 -343.46 -1.80 -39.94 16
9 C -0.23 -13.59 10.47 84.03 0.88 -12.71 16
10 H 0.07 4.27 8.06 -2.91 -0.02 4.25 16
11 C -0.05 -3.20 5.50 84.86 0.47 -2.73 16
12 N -0.98 -64.31 13.97 21.65 0.30 -64.00 16
13 Si 0.94 49.74 27.74 68.60 1.90 51.64 16
14 H -0.28 -14.65 7.11 99.48 0.71 -13.94 16
15 H -0.29 -15.02 7.11 99.48 0.71 -14.31 16
16 H -0.27 -14.04 6.52 99.48 0.65 -13.40 16
17 N -0.70 -26.23 4.47 -446.81 -2.00 -28.22 16
18 C 0.60 23.11 6.34 86.33 0.55 23.66 16
19 O -0.57 -22.56 12.88 -4.60 -0.06 -22.62 16
20 C -0.12 -4.30 7.05 41.23 0.29 -4.01 16
21 N -0.45 -15.33 10.90 -175.25 -1.91 -17.24 16
22 C 0.16 4.06 7.94 137.83 1.09 5.15 16
23 C -0.06 -0.88 10.32 71.23 0.74 -0.15 16
24 N -0.36 -8.19 2.94 -337.22 -0.99 -9.18 16
25 C 0.05 0.55 10.77 83.22 0.90 1.45 16
26 C -0.13 -1.08 9.98 22.05 0.22 -0.86 16
27 C -0.08 -1.10 10.08 22.35 0.23 -0.87 16
28 C -0.12 -2.76 9.73 22.30 0.22 -2.54 16
29 C 0.07 2.18 6.72 39.23 0.26 2.44 16
30 H 0.04 0.93 8.14 -2.39 -0.02 0.91 16
31 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16
32 H 0.05 1.07 8.14 -2.38 -0.02 1.05 16
33 H 0.06 1.30 8.14 -2.38 -0.02 1.29 16
34 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16
35 H 0.05 1.60 7.84 -2.39 -0.02 1.58 16
36 H 0.04 1.40 5.65 -2.39 -0.01 1.39 16
37 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16
38 H 0.09 2.22 8.14 -2.39 -0.02 2.20 16
39 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16
40 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16
41 H 0.36 18.49 5.20 -92.71 -0.48 18.01 16
42 H 0.26 16.20 8.31 -92.70 -0.77 15.43 16
43 H 0.41 15.70 8.30 -92.71 -0.77 14.93 16
44 H 0.09 1.19 8.14 -2.38 -0.02 1.17 16
45 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16
46 H 0.11 0.71 7.99 -2.39 -0.02 0.69 16
47 H 0.21 0.39 7.94 -2.91 -0.02 0.36 16
48 H 0.20 -0.22 8.06 -2.91 -0.02 -0.24 16
49 H 0.17 1.15 8.06 -2.91 -0.02 1.12 16
50 H 0.14 3.76 7.17 -2.91 -0.02 3.74 16
Total: -1.00 -84.33 406.27 2.70 -81.63
By element:
Atomic # 1 Polarization: 38.61 SS G_CDS: -0.36 Total: 38.25 kcal
Atomic # 6 Polarization: 2.06 SS G_CDS: 7.61 Total: 9.67 kcal
Atomic # 7 Polarization: -152.18 SS G_CDS: -6.39 Total: -158.58 kcal
Atomic # 8 Polarization: -22.56 SS G_CDS: -0.06 Total: -22.62 kcal
Atomic # 14 Polarization: 49.74 SS G_CDS: 1.90 Total: 51.64 kcal
Total: -84.33 2.70 -81.63 kcal
The number of atoms in the molecule is 50
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001282642287.mol2 50
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 104.436 kcal
(2) G-P(sol) polarization free energy of solvation -84.333 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.103 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.704 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.629 kcal
(6) G-S(sol) free energy of system = (1) + (5) 22.807 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.02 seconds