Wall clock time and date at job start Wed Apr 1 2020 03:57:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52998 * 109.47138 * 2 1 4 4 C 1.52997 * 109.47202 * 179.97438 * 3 2 1 5 5 C 1.52999 * 109.47543 * 179.97438 * 4 3 2 6 6 H 1.09005 * 109.46832 * 54.99810 * 5 4 3 7 7 C 1.52994 * 109.47237 * 175.00013 * 5 4 3 8 8 N 1.46505 * 109.47196 * 175.00200 * 7 5 4 9 9 C 1.36937 * 120.00211 * 180.02562 * 8 7 5 10 10 H 1.07994 * 119.99801 * 359.97438 * 9 8 7 11 11 C 1.38806 * 120.00090 * 179.97438 * 9 8 7 12 12 N 1.31624 * 120.00051 * 0.02562 * 11 9 8 13 13 Si 1.86798 * 120.00264 * 179.97438 * 11 9 8 14 14 H 1.48502 * 109.46858 * 0.02562 * 13 11 9 15 15 H 1.48499 * 109.47223 * 120.00174 * 13 11 9 16 16 H 1.48500 * 109.47433 * 240.00220 * 13 11 9 17 17 N 1.46498 * 109.46923 * 295.00124 * 5 4 3 18 18 C 1.34778 * 119.99831 * 84.99890 * 17 5 4 19 19 O 1.21734 * 120.00102 * 5.27072 * 18 17 5 20 20 C 1.46427 * 120.00084 * 185.26737 * 18 17 5 21 21 C 1.40113 * 126.85362 * 90.12117 * 20 18 17 22 22 C 1.40056 * 136.36870 * 0.03054 * 21 20 18 23 23 C 1.36072 * 119.47047 * 180.02562 * 22 21 20 24 24 C 1.39492 * 121.56742 * 359.96329 * 23 22 21 25 25 C 1.35814 * 121.83987 * 0.02562 * 24 23 22 26 26 C 1.40925 * 119.54609 * 359.97438 * 25 24 23 27 27 N 1.32143 * 135.42397 * 179.97438 * 26 25 24 28 28 N 1.28454 * 111.39808 * 179.71669 * 27 26 25 29 29 C 1.46497 * 124.15930 * 180.28180 * 28 27 26 30 30 H 1.08993 * 109.47083 * 59.99752 * 1 2 3 31 31 H 1.09001 * 109.47093 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47237 * 300.00184 * 1 2 3 33 33 H 1.08993 * 109.46861 * 239.99789 * 2 1 3 34 34 H 1.09003 * 109.46574 * 119.99998 * 2 1 3 35 35 H 1.09000 * 109.47207 * 59.99797 * 3 2 1 36 36 H 1.08993 * 109.47336 * 300.00093 * 3 2 1 37 37 H 1.09006 * 109.46809 * 59.99516 * 4 3 2 38 38 H 1.09003 * 109.47161 * 300.00284 * 4 3 2 39 39 H 1.09004 * 109.47310 * 295.00102 * 7 5 4 40 40 H 1.08997 * 109.47279 * 55.00288 * 7 5 4 41 41 H 0.97000 * 119.99715 * 0.02562 * 8 7 5 42 42 H 0.96996 * 120.00260 * 179.97438 * 12 11 9 43 43 H 0.96993 * 120.00145 * 264.99642 * 17 5 4 44 44 H 1.08005 * 120.26795 * 359.96452 * 22 21 20 45 45 H 1.08001 * 119.21789 * 179.97438 * 23 22 21 46 46 H 1.07998 * 119.07281 * 180.02562 * 24 23 22 47 47 H 1.08001 * 120.22710 * 180.02562 * 25 24 23 48 48 H 1.08997 * 109.47357 * 275.20549 * 29 28 27 49 49 H 1.08994 * 109.47178 * 35.21327 * 29 28 27 50 50 H 1.09000 * 109.46846 * 155.20745 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 6 4.0801 2.8850 0.0000 6 1 3.6451 3.4245 0.8413 7 6 5.6048 2.8868 0.1264 8 7 6.1032 4.2592 0.0060 9 6 7.4470 4.5093 0.0876 10 1 8.1395 3.6949 0.2410 11 6 7.9192 5.8096 -0.0270 12 7 7.0752 6.8022 -0.2135 13 14 9.7523 6.1509 0.0850 14 1 10.4815 4.8745 0.2959 15 1 10.2162 6.7828 -1.1763 16 1 10.0168 7.0666 1.2238 17 7 3.6931 3.5392 -1.2523 18 6 2.4758 4.1060 -1.3683 19 8 1.7349 4.1594 -0.4039 20 6 2.0446 4.6578 -2.6543 21 6 1.3588 3.9810 -3.6715 22 6 0.8633 2.6865 -3.8725 23 6 0.2262 2.3869 -5.0370 24 6 0.0522 3.3401 -6.0404 25 6 0.5088 4.6122 -5.9071 26 6 1.1780 4.9902 -4.7258 27 7 1.7341 6.1001 -4.2731 28 7 2.2245 5.9329 -3.0977 29 6 2.8999 6.9828 -2.3311 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5139 0.8900 33 1 1.8933 -0.5138 -0.8899 34 1 1.8933 -0.5139 0.8900 35 1 1.6767 1.9563 0.8900 36 1 1.6768 1.9563 -0.8899 37 1 3.9337 0.9284 -0.8891 38 1 3.9330 0.9287 0.8909 39 1 5.8895 2.4807 1.0970 40 1 6.0357 2.2732 -0.6647 41 1 5.4812 4.9907 -0.1314 42 1 7.4051 7.7109 -0.2932 43 1 4.3128 3.5644 -1.9980 44 1 0.9867 1.9318 -3.1098 45 1 -0.1539 1.3873 -5.1879 46 1 -0.4600 3.0586 -6.9486 47 1 0.3593 5.3295 -6.7006 48 1 3.9489 7.0286 -2.6236 49 1 2.4243 7.9426 -2.5324 50 1 2.8289 6.7583 -1.2668 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001282653059.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:57:45 Heat of formation + Delta-G solvation = 57.314539 kcal Electronic energy + Delta-G solvation = -30990.901337 eV Core-core repulsion = 27019.570042 eV Total energy + Delta-G solvation = -3971.331294 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -42.43318 -39.67707 -37.71804 -36.62699 -34.98890 -33.64871 -32.77919 -32.11104 -31.28609 -30.43382 -29.37409 -27.51514 -27.23184 -24.34378 -23.67660 -22.62577 -22.34724 -22.18840 -20.81051 -20.45743 -19.71757 -17.92773 -17.48732 -17.17003 -16.60214 -16.31066 -15.97011 -15.29553 -15.05049 -14.73989 -14.51900 -14.12795 -13.95329 -13.88968 -13.65850 -13.35306 -13.20817 -13.16362 -12.87670 -12.80394 -12.68206 -12.20539 -12.00244 -11.88086 -11.74065 -11.67113 -11.39747 -11.15602 -10.99688 -10.91905 -10.88829 -10.46782 -10.41640 -10.27417 -10.21504 -10.08307 -9.92027 -9.84120 -9.02839 -8.82529 -8.64486 -7.73828 -7.07376 -5.90205 -3.19026 0.57542 1.64769 2.08039 2.39421 2.75409 3.31680 3.35737 3.42036 3.43523 3.81332 4.11877 4.45723 4.55899 4.78953 4.92081 4.96486 5.01872 5.02857 5.12528 5.20613 5.23286 5.33276 5.35174 5.40010 5.45050 5.45714 5.49859 5.58008 5.67565 5.75269 5.83930 5.86487 5.91029 5.97198 6.00939 6.09096 6.16674 6.21525 6.32395 6.36564 6.39802 6.40454 6.51590 6.55274 6.59048 6.64004 6.78825 6.90088 7.59324 7.60571 7.96041 8.23111 8.28604 9.40955 9.94807 10.30467 11.32622 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.008937 B = 0.003859 C = 0.002936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3132.258179 B = 7254.328522 C = 9535.938199 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.124 4.124 3 C -0.115 4.115 4 C -0.128 4.128 5 C 0.136 3.864 6 H 0.092 0.908 7 C 0.144 3.856 8 N -0.731 5.731 9 C -0.241 4.241 10 H 0.072 0.928 11 C -0.011 4.011 12 N -0.933 5.933 13 Si 0.907 3.093 14 H -0.280 1.280 15 H -0.292 1.292 16 H -0.291 1.291 17 N -0.692 5.692 18 C 0.594 3.406 19 O -0.521 6.521 20 C -0.016 4.016 21 C -0.131 4.131 22 C -0.059 4.059 23 C -0.134 4.134 24 C -0.103 4.103 25 C -0.077 4.077 26 C 0.055 3.945 27 N -0.289 5.289 28 N -0.208 5.208 29 C 0.073 3.927 30 H 0.052 0.948 31 H 0.049 0.951 32 H 0.053 0.947 33 H 0.057 0.943 34 H 0.058 0.942 35 H 0.067 0.933 36 H 0.060 0.940 37 H 0.065 0.935 38 H 0.074 0.926 39 H 0.037 0.963 40 H 0.026 0.974 41 H 0.384 0.616 42 H 0.255 0.745 43 H 0.407 0.593 44 H 0.121 0.879 45 H 0.122 0.878 46 H 0.125 0.875 47 H 0.127 0.873 48 H 0.108 0.892 49 H 0.103 0.897 50 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.989 -9.644 -7.275 18.483 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.162 4.162 3 C -0.153 4.153 4 C -0.167 4.167 5 C 0.032 3.968 6 H 0.110 0.890 7 C 0.016 3.984 8 N -0.376 5.376 9 C -0.372 4.372 10 H 0.090 0.910 11 C -0.207 4.207 12 N -0.581 5.581 13 Si 0.738 3.262 14 H -0.205 1.205 15 H -0.219 1.219 16 H -0.218 1.218 17 N -0.343 5.343 18 C 0.377 3.623 19 O -0.396 6.396 20 C -0.153 4.153 21 C -0.140 4.140 22 C -0.079 4.079 23 C -0.154 4.154 24 C -0.125 4.125 25 C -0.098 4.098 26 C -0.089 4.089 27 N -0.126 5.126 28 N 0.010 4.990 29 C -0.067 4.067 30 H 0.071 0.929 31 H 0.068 0.932 32 H 0.072 0.928 33 H 0.076 0.924 34 H 0.077 0.923 35 H 0.085 0.915 36 H 0.079 0.921 37 H 0.083 0.917 38 H 0.093 0.907 39 H 0.054 0.946 40 H 0.044 0.956 41 H 0.218 0.782 42 H 0.064 0.936 43 H 0.243 0.757 44 H 0.139 0.861 45 H 0.140 0.860 46 H 0.143 0.857 47 H 0.145 0.855 48 H 0.126 0.874 49 H 0.121 0.879 50 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -14.020 -8.352 -6.737 17.655 hybrid contribution 1.098 -0.108 -0.104 1.108 sum -12.922 -8.460 -6.841 16.892 Atomic orbital electron populations 1.21755 0.96161 1.00963 1.01942 1.21554 0.95681 0.97407 1.01528 1.21676 0.94828 0.95785 1.02989 1.21991 0.96045 0.96059 1.02579 1.21435 0.96389 0.92642 0.86367 0.89031 1.20981 0.88927 0.89434 0.99060 1.42331 1.05424 1.01948 1.87915 1.19263 0.83572 0.92577 1.41792 0.91034 1.24711 0.97741 0.95617 1.02598 1.69645 1.32858 0.98980 1.56646 0.86119 0.85004 0.77820 0.77231 1.20535 1.21869 1.21820 1.45990 1.14777 1.55983 1.17512 1.16639 0.82270 0.78340 0.85092 1.90877 1.53660 1.57637 1.37462 1.21134 1.09171 0.87341 0.97634 1.19314 1.04728 0.96185 0.93724 1.20045 0.96968 0.93345 0.97534 1.20597 1.01310 0.99610 0.93849 1.20562 1.00071 0.92757 0.99138 1.19856 0.98821 0.96604 0.94482 1.20592 1.02046 0.89602 0.96670 1.73443 1.17581 1.24786 0.96826 1.45846 1.34844 1.08179 1.10165 1.22571 0.98993 0.89085 0.96026 0.92871 0.93210 0.92804 0.92439 0.92305 0.91455 0.92095 0.91676 0.90742 0.94555 0.95593 0.78197 0.93554 0.75734 0.86067 0.85972 0.85711 0.85473 0.87399 0.87883 0.87732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.50 9.91 37.16 0.37 -1.13 16 2 C -0.12 -1.30 5.93 -26.73 -0.16 -1.46 16 3 C -0.12 -1.46 3.89 -26.73 -0.10 -1.56 16 4 C -0.13 -1.60 4.89 -26.73 -0.13 -1.73 16 5 C 0.14 2.09 2.42 -67.93 -0.16 1.92 16 6 H 0.09 1.58 7.51 -51.93 -0.39 1.19 16 7 C 0.14 2.59 5.82 -4.04 -0.02 2.57 16 8 N -0.73 -16.91 5.43 -59.91 -0.33 -17.23 16 9 C -0.24 -6.31 9.99 -15.06 -0.15 -6.46 16 10 H 0.07 1.84 7.83 -52.49 -0.41 1.43 16 11 C -0.01 -0.29 5.50 -17.43 -0.10 -0.38 16 12 N -0.93 -26.24 13.06 55.49 0.72 -25.52 16 13 Si 0.91 21.49 29.55 -169.99 -5.02 16.47 16 14 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 15 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 16 H -0.29 -7.00 7.11 56.52 0.40 -6.59 16 17 N -0.69 -10.56 4.46 -55.19 -0.25 -10.80 16 18 C 0.59 9.61 5.21 -12.96 -0.07 9.54 16 19 O -0.52 -9.59 14.68 5.16 0.08 -9.51 16 20 C -0.02 -0.25 6.70 -81.93 -0.55 -0.80 16 21 C -0.13 -1.99 6.41 -104.93 -0.67 -2.66 16 22 C -0.06 -0.75 10.06 -39.68 -0.40 -1.15 16 23 C -0.13 -1.43 9.92 -39.89 -0.40 -1.82 16 24 C -0.10 -1.06 9.89 -39.98 -0.40 -1.45 16 25 C -0.08 -0.93 10.08 -39.43 -0.40 -1.33 16 26 C 0.06 0.84 7.53 -83.14 -0.63 0.22 16 27 N -0.29 -4.67 11.88 33.21 0.39 -4.27 16 28 N -0.21 -3.24 3.71 -63.76 -0.24 -3.48 16 29 C 0.07 0.98 11.12 59.85 0.67 1.64 16 30 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 32 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 34 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.07 0.96 7.92 -51.93 -0.41 0.55 16 36 H 0.06 0.85 5.47 -51.93 -0.28 0.57 16 37 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 39 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.38 9.36 7.33 -40.82 -0.30 9.06 16 42 H 0.25 6.98 8.31 -40.82 -0.34 6.64 16 43 H 0.41 6.24 8.59 -40.82 -0.35 5.89 16 44 H 0.12 1.42 7.77 -52.48 -0.41 1.01 16 45 H 0.12 0.97 8.06 -52.49 -0.42 0.54 16 46 H 0.12 0.89 8.06 -52.49 -0.42 0.47 16 47 H 0.13 1.28 8.06 -52.49 -0.42 0.86 16 48 H 0.11 1.49 8.14 -51.93 -0.42 1.07 16 49 H 0.10 1.15 8.14 -51.93 -0.42 0.73 16 50 H 0.10 1.46 7.55 -51.93 -0.39 1.06 16 LS Contribution 411.40 15.07 6.20 6.20 Total: -1.00 -31.02 411.40 -9.73 -40.76 By element: Atomic # 1 Polarization: 21.45 SS G_CDS: -8.00 Total: 13.45 kcal Atomic # 6 Polarization: -2.76 SS G_CDS: -3.30 Total: -6.06 kcal Atomic # 7 Polarization: -61.61 SS G_CDS: 0.31 Total: -61.30 kcal Atomic # 8 Polarization: -9.59 SS G_CDS: 0.08 Total: -9.51 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Total LS contribution 6.20 Total: 6.20 kcal Total: -31.02 -9.73 -40.76 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001282653059.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.073 kcal (2) G-P(sol) polarization free energy of solvation -31.024 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.735 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.758 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.315 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds