Wall clock time and date at job start Wed Apr 1 2020 03:57:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52998 * 109.47138 * 2 1 4 4 C 1.52997 * 109.47202 * 179.97438 * 3 2 1 5 5 C 1.52999 * 109.47543 * 179.97438 * 4 3 2 6 6 H 1.09005 * 109.46832 * 54.99810 * 5 4 3 7 7 C 1.52994 * 109.47237 * 175.00013 * 5 4 3 8 8 N 1.46505 * 109.47196 * 175.00200 * 7 5 4 9 9 C 1.36937 * 120.00211 * 180.02562 * 8 7 5 10 10 H 1.07994 * 119.99801 * 359.97438 * 9 8 7 11 11 C 1.38806 * 120.00090 * 179.97438 * 9 8 7 12 12 N 1.31624 * 120.00051 * 0.02562 * 11 9 8 13 13 Si 1.86798 * 120.00264 * 179.97438 * 11 9 8 14 14 H 1.48502 * 109.46858 * 0.02562 * 13 11 9 15 15 H 1.48499 * 109.47223 * 120.00174 * 13 11 9 16 16 H 1.48500 * 109.47433 * 240.00220 * 13 11 9 17 17 N 1.46498 * 109.46923 * 295.00124 * 5 4 3 18 18 C 1.34778 * 119.99831 * 84.99890 * 17 5 4 19 19 O 1.21734 * 120.00102 * 5.27072 * 18 17 5 20 20 C 1.46427 * 120.00084 * 185.26737 * 18 17 5 21 21 C 1.40113 * 126.85362 * 90.12117 * 20 18 17 22 22 C 1.40056 * 136.36870 * 0.03054 * 21 20 18 23 23 C 1.36072 * 119.47047 * 180.02562 * 22 21 20 24 24 C 1.39492 * 121.56742 * 359.96329 * 23 22 21 25 25 C 1.35814 * 121.83987 * 0.02562 * 24 23 22 26 26 C 1.40925 * 119.54609 * 359.97438 * 25 24 23 27 27 N 1.32143 * 135.42397 * 179.97438 * 26 25 24 28 28 N 1.28454 * 111.39808 * 179.71669 * 27 26 25 29 29 C 1.46497 * 124.15930 * 180.28180 * 28 27 26 30 30 H 1.08993 * 109.47083 * 59.99752 * 1 2 3 31 31 H 1.09001 * 109.47093 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47237 * 300.00184 * 1 2 3 33 33 H 1.08993 * 109.46861 * 239.99789 * 2 1 3 34 34 H 1.09003 * 109.46574 * 119.99998 * 2 1 3 35 35 H 1.09000 * 109.47207 * 59.99797 * 3 2 1 36 36 H 1.08993 * 109.47336 * 300.00093 * 3 2 1 37 37 H 1.09006 * 109.46809 * 59.99516 * 4 3 2 38 38 H 1.09003 * 109.47161 * 300.00284 * 4 3 2 39 39 H 1.09004 * 109.47310 * 295.00102 * 7 5 4 40 40 H 1.08997 * 109.47279 * 55.00288 * 7 5 4 41 41 H 0.97000 * 119.99715 * 0.02562 * 8 7 5 42 42 H 0.96996 * 120.00260 * 179.97438 * 12 11 9 43 43 H 0.96993 * 120.00145 * 264.99642 * 17 5 4 44 44 H 1.08005 * 120.26795 * 359.96452 * 22 21 20 45 45 H 1.08001 * 119.21789 * 179.97438 * 23 22 21 46 46 H 1.07998 * 119.07281 * 180.02562 * 24 23 22 47 47 H 1.08001 * 120.22710 * 180.02562 * 25 24 23 48 48 H 1.08997 * 109.47357 * 275.20549 * 29 28 27 49 49 H 1.08994 * 109.47178 * 35.21327 * 29 28 27 50 50 H 1.09000 * 109.46846 * 155.20745 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 6 4.0801 2.8850 0.0000 6 1 3.6451 3.4245 0.8413 7 6 5.6048 2.8868 0.1264 8 7 6.1032 4.2592 0.0060 9 6 7.4470 4.5093 0.0876 10 1 8.1395 3.6949 0.2410 11 6 7.9192 5.8096 -0.0270 12 7 7.0752 6.8022 -0.2135 13 14 9.7523 6.1509 0.0850 14 1 10.4815 4.8745 0.2959 15 1 10.2162 6.7828 -1.1763 16 1 10.0168 7.0666 1.2238 17 7 3.6931 3.5392 -1.2523 18 6 2.4758 4.1060 -1.3683 19 8 1.7349 4.1594 -0.4039 20 6 2.0446 4.6578 -2.6543 21 6 1.3588 3.9810 -3.6715 22 6 0.8633 2.6865 -3.8725 23 6 0.2262 2.3869 -5.0370 24 6 0.0522 3.3401 -6.0404 25 6 0.5088 4.6122 -5.9071 26 6 1.1780 4.9902 -4.7258 27 7 1.7341 6.1001 -4.2731 28 7 2.2245 5.9329 -3.0977 29 6 2.8999 6.9828 -2.3311 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5139 0.8900 33 1 1.8933 -0.5138 -0.8899 34 1 1.8933 -0.5139 0.8900 35 1 1.6767 1.9563 0.8900 36 1 1.6768 1.9563 -0.8899 37 1 3.9337 0.9284 -0.8891 38 1 3.9330 0.9287 0.8909 39 1 5.8895 2.4807 1.0970 40 1 6.0357 2.2732 -0.6647 41 1 5.4812 4.9907 -0.1314 42 1 7.4051 7.7109 -0.2932 43 1 4.3128 3.5644 -1.9980 44 1 0.9867 1.9318 -3.1098 45 1 -0.1539 1.3873 -5.1879 46 1 -0.4600 3.0586 -6.9486 47 1 0.3593 5.3295 -6.7006 48 1 3.9489 7.0286 -2.6236 49 1 2.4243 7.9426 -2.5324 50 1 2.8289 6.7583 -1.2668 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001282653059.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:57:43 Heat of formation + Delta-G solvation = 39.015093 kcal Electronic energy + Delta-G solvation = -30991.694860 eV Core-core repulsion = 27019.570042 eV Total energy + Delta-G solvation = -3972.124818 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -43.54357 -40.96646 -38.66894 -37.96694 -36.27294 -35.16952 -33.88804 -33.31476 -32.73611 -31.73734 -30.40236 -28.75723 -28.44073 -25.95189 -24.82176 -23.76548 -23.64499 -23.27173 -21.81824 -21.72551 -20.90343 -19.33200 -18.87123 -18.44347 -17.86204 -17.41728 -17.09606 -16.73988 -16.34269 -15.94714 -15.77536 -15.31938 -15.19658 -15.07910 -15.00732 -14.63967 -14.41352 -14.24926 -14.14224 -13.93267 -13.80525 -13.56429 -13.16113 -12.87191 -12.85178 -12.77977 -12.70012 -12.64876 -12.53904 -12.08753 -12.03058 -11.87966 -11.85333 -11.49174 -11.43080 -11.35168 -11.26460 -11.15800 -10.97414 -10.11757 -9.67345 -9.00902 -8.76770 -7.95437 -5.23500 -0.45126 0.66208 0.89413 1.31861 1.47285 1.48916 1.55620 1.57405 2.08438 2.55026 2.85890 3.08011 3.36178 3.40821 3.62133 3.86314 3.95781 4.00498 4.07271 4.11530 4.14314 4.23803 4.25154 4.30651 4.34363 4.41993 4.46007 4.55594 4.58609 4.60544 4.81765 4.84498 4.91006 4.93891 4.99984 5.07492 5.07862 5.15268 5.21353 5.34743 5.35458 5.38944 5.50127 5.51433 5.52647 5.57970 5.58706 5.64033 6.01600 6.26200 6.31334 6.83157 6.95271 7.34351 8.06003 8.30494 9.27600 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.008937 B = 0.003859 C = 0.002936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3132.258179 B = 7254.328522 C = 9535.938199 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.119 4.119 3 C -0.109 4.109 4 C -0.119 4.119 5 C 0.145 3.855 6 H 0.069 0.931 7 C 0.145 3.855 8 N -0.742 5.742 9 C -0.242 4.242 10 H 0.077 0.923 11 C -0.068 4.068 12 N -0.963 5.963 13 Si 0.967 3.033 14 H -0.267 1.267 15 H -0.296 1.296 16 H -0.297 1.297 17 N -0.685 5.685 18 C 0.604 3.396 19 O -0.550 6.550 20 C -0.041 4.041 21 C -0.140 4.140 22 C -0.084 4.084 23 C -0.117 4.117 24 C -0.091 4.091 25 C -0.093 4.093 26 C 0.035 3.965 27 N -0.308 5.308 28 N -0.216 5.216 29 C 0.075 3.925 30 H 0.047 0.953 31 H 0.067 0.933 32 H 0.044 0.956 33 H 0.069 0.931 34 H 0.068 0.932 35 H 0.045 0.955 36 H 0.045 0.955 37 H 0.079 0.921 38 H 0.090 0.910 39 H 0.043 0.957 40 H 0.040 0.960 41 H 0.375 0.625 42 H 0.250 0.750 43 H 0.407 0.593 44 H 0.127 0.873 45 H 0.158 0.842 46 H 0.166 0.834 47 H 0.146 0.854 48 H 0.099 0.901 49 H 0.124 0.876 50 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.592 -12.314 -8.828 21.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.156 4.156 3 C -0.147 4.147 4 C -0.157 4.157 5 C 0.041 3.959 6 H 0.087 0.913 7 C 0.019 3.981 8 N -0.386 5.386 9 C -0.374 4.374 10 H 0.095 0.905 11 C -0.261 4.261 12 N -0.613 5.613 13 Si 0.797 3.203 14 H -0.191 1.191 15 H -0.223 1.223 16 H -0.225 1.225 17 N -0.335 5.335 18 C 0.387 3.613 19 O -0.427 6.427 20 C -0.178 4.178 21 C -0.149 4.149 22 C -0.105 4.105 23 C -0.136 4.136 24 C -0.112 4.112 25 C -0.113 4.113 26 C -0.109 4.109 27 N -0.146 5.146 28 N 0.001 4.999 29 C -0.064 4.064 30 H 0.066 0.934 31 H 0.086 0.914 32 H 0.063 0.937 33 H 0.088 0.912 34 H 0.086 0.914 35 H 0.064 0.936 36 H 0.063 0.937 37 H 0.098 0.902 38 H 0.108 0.892 39 H 0.061 0.939 40 H 0.057 0.943 41 H 0.207 0.793 42 H 0.059 0.941 43 H 0.243 0.757 44 H 0.145 0.855 45 H 0.176 0.824 46 H 0.184 0.816 47 H 0.163 0.837 48 H 0.118 0.882 49 H 0.142 0.858 50 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -14.613 -11.075 -8.288 20.122 hybrid contribution 1.193 0.619 0.304 1.378 sum -13.420 -10.456 -7.983 18.792 Atomic orbital electron populations 1.21752 0.95857 1.01896 1.01294 1.21519 0.95949 0.95627 1.02551 1.21573 0.94744 0.97152 1.01188 1.21941 0.95945 0.93849 1.04009 1.21312 0.94558 0.94368 0.85644 0.91328 1.21122 0.90484 0.86977 0.99556 1.42496 1.04486 1.03758 1.87833 1.19622 0.84976 0.92668 1.40102 0.90473 1.25428 1.01316 0.95771 1.03557 1.69781 1.34274 0.98968 1.58296 0.85174 0.80958 0.77752 0.76447 1.19149 1.22319 1.22476 1.45930 1.14507 1.55744 1.17358 1.16617 0.82008 0.77725 0.84935 1.90852 1.54477 1.58833 1.38509 1.21143 1.10771 0.87912 0.97939 1.19661 1.04547 0.97307 0.93394 1.20273 0.98487 0.92609 0.99085 1.21093 0.98760 1.01231 0.92494 1.21068 0.98384 0.91571 1.00209 1.20254 0.98964 0.98126 0.93982 1.21159 1.02548 0.89351 0.97882 1.73365 1.18341 1.25716 0.97145 1.45912 1.35383 1.08311 1.10319 1.22559 0.98728 0.89862 0.95244 0.93366 0.91426 0.93690 0.91229 0.91351 0.93624 0.93652 0.90221 0.89166 0.93929 0.94261 0.79327 0.94127 0.75706 0.85496 0.82431 0.81648 0.83664 0.88220 0.85795 0.88816 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.77 9.91 71.98 0.71 -2.06 16 2 C -0.12 -2.26 5.93 30.60 0.18 -2.08 16 3 C -0.11 -2.71 3.89 30.59 0.12 -2.59 16 4 C -0.12 -2.84 4.89 30.59 0.15 -2.69 16 5 C 0.15 4.50 2.42 44.99 0.11 4.61 16 6 H 0.07 2.47 7.51 -2.38 -0.02 2.45 16 7 C 0.15 5.16 5.82 86.38 0.50 5.67 16 8 N -0.74 -34.72 5.43 -343.46 -1.87 -36.58 16 9 C -0.24 -12.66 9.99 84.03 0.84 -11.82 16 10 H 0.08 3.88 7.83 -2.91 -0.02 3.86 16 11 C -0.07 -3.70 5.50 84.86 0.47 -3.23 16 12 N -0.96 -55.44 13.06 21.65 0.28 -55.16 16 13 Si 0.97 44.44 29.55 68.60 2.03 46.47 16 14 H -0.27 -11.55 7.11 99.48 0.71 -10.85 16 15 H -0.30 -13.69 7.11 99.48 0.71 -12.98 16 16 H -0.30 -13.86 7.11 99.48 0.71 -13.15 16 17 N -0.69 -21.59 4.46 -446.73 -1.99 -23.58 16 18 C 0.60 20.49 5.21 86.38 0.45 20.95 16 19 O -0.55 -21.33 14.68 -4.46 -0.07 -21.40 16 20 C -0.04 -1.37 6.70 41.06 0.28 -1.10 16 21 C -0.14 -4.30 6.41 -20.07 -0.13 -4.43 16 22 C -0.08 -2.05 10.06 22.21 0.22 -1.82 16 23 C -0.12 -2.09 9.92 22.07 0.22 -1.87 16 24 C -0.09 -1.52 9.89 22.01 0.22 -1.30 16 25 C -0.09 -2.08 10.08 22.37 0.23 -1.85 16 26 C 0.03 1.05 7.53 42.07 0.32 1.37 16 27 N -0.31 -10.24 11.88 -48.86 -0.58 -10.82 16 28 N -0.22 -7.10 3.71 -355.63 -1.32 -8.42 16 29 C 0.08 2.19 11.12 127.77 1.42 3.61 16 30 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 31 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 32 H 0.04 0.89 8.14 -2.39 -0.02 0.87 16 33 H 0.07 1.17 8.14 -2.39 -0.02 1.16 16 34 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 35 H 0.04 1.32 7.92 -2.39 -0.02 1.30 16 36 H 0.04 1.27 5.47 -2.39 -0.01 1.26 16 37 H 0.08 1.71 8.14 -2.38 -0.02 1.69 16 38 H 0.09 1.90 8.14 -2.39 -0.02 1.88 16 39 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 40 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 41 H 0.37 18.84 7.33 -92.71 -0.68 18.16 16 42 H 0.25 14.06 8.31 -92.71 -0.77 13.29 16 43 H 0.41 12.86 8.59 -92.71 -0.80 12.06 16 44 H 0.13 2.84 7.77 -2.91 -0.02 2.82 16 45 H 0.16 1.70 8.06 -2.91 -0.02 1.68 16 46 H 0.17 1.46 8.06 -2.91 -0.02 1.44 16 47 H 0.15 2.62 8.06 -2.91 -0.02 2.60 16 48 H 0.10 3.01 8.14 -2.39 -0.02 2.99 16 49 H 0.12 2.95 8.14 -2.39 -0.02 2.93 16 50 H 0.09 2.88 7.55 -2.39 -0.02 2.86 16 Total: -1.00 -68.25 411.40 2.26 -65.99 By element: Atomic # 1 Polarization: 44.66 SS G_CDS: -0.52 Total: 44.14 kcal Atomic # 6 Polarization: -6.94 SS G_CDS: 6.30 Total: -0.64 kcal Atomic # 7 Polarization: -129.08 SS G_CDS: -5.48 Total: -134.56 kcal Atomic # 8 Polarization: -21.33 SS G_CDS: -0.07 Total: -21.40 kcal Atomic # 14 Polarization: 44.44 SS G_CDS: 2.03 Total: 46.47 kcal Total: -68.25 2.26 -65.99 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001282653059.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.004 kcal (2) G-P(sol) polarization free energy of solvation -68.251 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.753 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.989 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.015 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds