Wall clock time and date at job start Wed Apr 1 2020 03:36:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.47274 * 2 1 4 4 N 1.46505 * 109.44731 * 305.39358 * 3 2 1 5 5 C 1.36935 * 120.00210 * 302.94084 * 4 3 2 6 6 H 1.08001 * 120.00065 * 4.61130 * 5 4 3 7 7 C 1.38807 * 119.99694 * 184.60731 * 5 4 3 8 8 N 1.31622 * 119.99721 * 180.02562 * 7 5 4 9 9 Si 1.86796 * 120.00498 * 0.02562 * 7 5 4 10 10 H 1.48506 * 109.47107 * 89.99665 * 9 7 5 11 11 H 1.48494 * 109.47439 * 209.99750 * 9 7 5 12 12 H 1.48502 * 109.47090 * 330.00124 * 9 7 5 13 13 C 1.53046 * 109.45982 * 185.43136 * 3 2 1 14 14 C 1.53187 * 109.31176 * 178.61194 * 13 3 2 15 15 N 1.46926 * 108.77676 * 54.63509 * 14 13 3 16 16 C 1.34776 * 120.62987 * 126.37046 * 15 14 13 17 17 O 1.21555 * 120.00077 * 4.23590 * 16 15 14 18 18 C 1.47834 * 119.99811 * 184.24349 * 16 15 14 19 19 C 1.39943 * 120.93812 * 314.77372 * 18 16 15 20 20 N 1.32148 * 118.92561 * 179.97438 * 19 18 16 21 21 C 1.31871 * 120.96351 * 0.02562 * 20 19 18 22 22 C 1.50703 * 118.95339 * 179.97438 * 21 20 19 23 23 C 1.52995 * 117.50109 * 119.99875 * 22 21 20 24 24 C 1.52997 * 117.50317 * 188.62415 * 22 21 20 25 25 N 1.31867 * 122.09927 * 0.27660 * 21 20 19 26 26 C 1.32154 * 120.96226 * 359.43480 * 25 21 20 27 27 C 1.46923 * 118.73988 * 306.64278 * 15 14 13 28 28 C 1.52766 * 109.00585 * 53.30547 * 27 15 14 29 29 H 1.08997 * 109.47111 * 63.09259 * 1 2 3 30 30 H 1.08997 * 109.47079 * 183.09936 * 1 2 3 31 31 H 1.09007 * 109.46729 * 303.09671 * 1 2 3 32 32 H 1.09001 * 109.46939 * 239.99539 * 2 1 3 33 33 H 1.08999 * 109.47156 * 119.99765 * 2 1 3 34 34 H 0.96997 * 119.99234 * 122.93587 * 4 3 2 35 35 H 0.97003 * 120.00124 * 180.02562 * 8 7 5 36 36 H 1.09007 * 109.49462 * 58.65864 * 13 3 2 37 37 H 1.08991 * 109.49903 * 298.56578 * 13 3 2 38 38 H 1.09004 * 109.58803 * 294.84661 * 14 13 3 39 39 H 1.08996 * 109.58978 * 174.42480 * 14 13 3 40 40 H 1.07996 * 120.54063 * 359.96189 * 19 18 16 41 41 H 1.09008 * 115.55683 * 334.30942 * 22 21 20 42 42 H 1.08996 * 117.49975 * 359.97438 * 23 22 21 43 43 H 1.08996 * 117.50090 * 214.98577 * 23 22 21 44 44 H 1.08993 * 117.49964 * 145.01436 * 24 22 21 45 45 H 1.09002 * 117.51302 * 359.97438 * 24 22 21 46 46 H 1.08000 * 120.53666 * 180.25312 * 26 25 21 47 47 H 1.08993 * 109.58963 * 173.14053 * 27 15 14 48 48 H 1.09006 * 109.58801 * 293.57338 * 27 15 14 49 49 H 1.09000 * 109.56031 * 185.54983 * 28 27 15 50 50 H 1.09000 * 109.35489 * 65.50304 * 28 27 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 1.4483 2.1691 -1.1262 5 6 1.6167 1.7064 -2.4039 6 1 2.1214 0.7672 -2.5761 7 6 1.1386 2.4445 -3.4779 8 7 1.3000 1.9995 -4.7061 9 14 0.2662 4.0692 -3.1803 10 1 1.2601 5.1727 -3.1842 11 1 -0.7326 4.2989 -4.2549 12 1 -0.4222 4.0278 -1.8651 13 6 3.5644 1.4443 -0.1366 14 6 4.0682 2.8905 -0.1711 15 7 3.5681 3.5941 1.0179 16 6 4.4170 4.2417 1.8403 17 8 5.5979 4.3132 1.5611 18 6 3.9119 4.8652 3.0820 19 6 2.7406 5.6309 3.0776 20 7 2.3249 6.1695 4.2105 21 6 2.9965 5.9942 5.3317 22 6 2.4817 6.6297 6.5975 23 6 2.1320 5.7015 7.7624 24 6 3.3843 6.5778 7.8318 25 7 4.1075 5.2855 5.3796 26 6 4.5919 4.7066 4.2948 27 6 2.1257 3.5730 1.2966 28 6 1.6430 2.1237 1.3115 29 1 -0.3633 0.4651 -0.9164 30 1 -0.3633 -1.0261 0.0556 31 1 -0.3633 0.5612 0.8610 32 1 1.8933 -0.5139 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 0.9372 2.9779 -0.9665 35 1 0.9663 2.5155 -5.4567 36 1 3.8475 0.9382 -1.0596 37 1 4.0065 0.9252 0.7137 38 1 3.6996 3.3846 -1.0701 39 1 5.1582 2.8980 -0.1685 40 1 2.1854 5.7794 2.1633 41 1 1.8668 7.5193 6.4607 42 1 2.2739 4.6312 7.6132 43 1 1.2871 5.9803 8.3920 44 1 3.3632 7.4332 8.5070 45 1 4.3504 6.0838 7.7288 46 1 5.5002 4.1242 4.3426 47 1 1.9343 4.0305 2.2672 48 1 1.5953 4.1238 0.5197 49 1 0.5586 2.1014 1.4194 50 1 2.1032 1.5983 2.1484 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001327477772.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:36:39 Heat of formation + Delta-G solvation = 65.903453 kcal Electronic energy + Delta-G solvation = -31135.148230 eV Core-core repulsion = 27164.189378 eV Total energy + Delta-G solvation = -3970.958851 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.70055 -40.06141 -38.26974 -37.32979 -35.17272 -34.07892 -32.67623 -32.53199 -30.76526 -30.41207 -29.68706 -26.48024 -25.15322 -24.90960 -23.56981 -22.97852 -22.71314 -22.13457 -21.36687 -20.00184 -18.43463 -18.14225 -17.85618 -17.41539 -17.06274 -16.07976 -15.60656 -15.39636 -14.98246 -14.52799 -14.47918 -14.40730 -14.20673 -13.99433 -13.83668 -13.48412 -13.26639 -13.00883 -12.63611 -12.52871 -12.24583 -11.97332 -11.90620 -11.77281 -11.63316 -11.34365 -11.27153 -11.13054 -11.01964 -10.89478 -10.87657 -10.73243 -10.53575 -10.19002 -10.14796 -9.95181 -9.84002 -9.60947 -9.53149 -9.42655 -9.00520 -8.49243 -7.31826 -5.82042 -3.18217 0.21628 0.70335 2.53772 2.90877 3.16664 3.28706 3.31979 3.36881 3.40554 3.60936 3.82820 4.13857 4.27180 4.47502 4.52381 4.58165 4.62441 4.67202 4.81275 4.98832 5.00993 5.17149 5.28128 5.28183 5.36232 5.39783 5.45912 5.48304 5.61392 5.63066 5.69758 5.82138 5.82998 5.87595 5.93700 6.00647 6.02742 6.08279 6.21011 6.33572 6.39835 6.50999 6.55776 6.63868 6.67260 6.80475 6.94824 7.05184 7.41138 7.68752 7.94297 8.05678 8.37021 9.14421 9.86835 10.06330 11.36104 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.014937 B = 0.002974 C = 0.002962 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1874.108127 B = 9414.247399 C = 9451.659177 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.121 4.121 3 C 0.209 3.791 4 N -0.739 5.739 5 C -0.234 4.234 6 H 0.092 0.908 7 C 0.007 3.993 8 N -0.932 5.932 9 Si 0.877 3.123 10 H -0.285 1.285 11 H -0.293 1.293 12 H -0.279 1.279 13 C -0.134 4.134 14 C 0.121 3.879 15 N -0.590 5.590 16 C 0.565 3.435 17 O -0.535 6.535 18 C -0.235 4.235 19 C 0.182 3.818 20 N -0.514 5.514 21 C 0.360 3.640 22 C -0.107 4.107 23 C -0.153 4.153 24 C -0.152 4.152 25 N -0.517 5.517 26 C 0.203 3.797 27 C 0.097 3.903 28 C -0.135 4.135 29 H 0.074 0.926 30 H 0.035 0.965 31 H 0.039 0.961 32 H 0.066 0.934 33 H 0.042 0.958 34 H 0.359 0.641 35 H 0.259 0.741 36 H 0.083 0.917 37 H 0.050 0.950 38 H 0.088 0.912 39 H 0.083 0.917 40 H 0.178 0.822 41 H 0.131 0.869 42 H 0.097 0.903 43 H 0.104 0.896 44 H 0.101 0.899 45 H 0.111 0.889 46 H 0.178 0.822 47 H 0.079 0.921 48 H 0.078 0.922 49 H 0.080 0.920 50 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.483 5.187 22.857 23.485 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.160 4.160 3 C 0.118 3.882 4 N -0.383 5.383 5 C -0.364 4.364 6 H 0.110 0.890 7 C -0.188 4.188 8 N -0.580 5.580 9 Si 0.708 3.292 10 H -0.212 1.212 11 H -0.219 1.219 12 H -0.205 1.205 13 C -0.174 4.174 14 C 0.000 4.000 15 N -0.322 5.322 16 C 0.351 3.649 17 O -0.413 6.413 18 C -0.243 4.243 19 C 0.016 3.984 20 N -0.227 5.227 21 C 0.095 3.905 22 C -0.127 4.127 23 C -0.191 4.191 24 C -0.190 4.190 25 N -0.231 5.231 26 C 0.037 3.963 27 C -0.027 4.027 28 C -0.173 4.173 29 H 0.093 0.907 30 H 0.054 0.946 31 H 0.058 0.942 32 H 0.085 0.915 33 H 0.061 0.939 34 H 0.193 0.807 35 H 0.069 0.931 36 H 0.102 0.898 37 H 0.069 0.931 38 H 0.106 0.894 39 H 0.101 0.899 40 H 0.195 0.805 41 H 0.149 0.851 42 H 0.116 0.884 43 H 0.123 0.877 44 H 0.120 0.880 45 H 0.129 0.871 46 H 0.195 0.805 47 H 0.096 0.904 48 H 0.096 0.904 49 H 0.099 0.901 50 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 1.830 5.526 23.286 24.003 hybrid contribution -0.550 0.750 -1.004 1.368 sum 1.281 6.275 22.282 23.184 Atomic orbital electron populations 1.21658 0.96067 0.99656 1.02388 1.21835 0.96368 0.97318 1.00508 1.19495 0.90984 0.91390 0.86333 1.42851 1.63063 1.29552 1.02831 1.18925 1.31780 1.04787 0.80916 0.89024 1.24638 1.01093 0.97988 0.95125 1.69683 1.51473 1.39331 0.97482 0.86688 0.79809 0.85777 0.76961 1.21200 1.21918 1.20515 1.22311 0.97830 0.95309 1.01968 1.21695 0.99384 0.92759 0.86168 1.48085 1.07218 1.51160 1.25714 1.17786 0.85840 0.78924 0.82382 1.90798 1.15951 1.60129 1.74388 1.21810 0.99832 1.05155 0.97504 1.23643 0.90325 0.87659 0.96801 1.68215 1.33369 1.22220 0.98894 1.22348 0.86422 0.89084 0.92650 1.20689 1.05421 1.01948 0.84622 1.22998 0.99806 0.97713 0.98622 1.23047 0.96250 1.02388 0.97326 1.68201 1.13274 1.10421 1.31159 1.23336 0.96516 0.90750 0.85718 1.22039 0.80548 0.98905 1.01159 1.22111 1.01709 0.94685 0.98836 0.90714 0.94573 0.94204 0.91540 0.93897 0.80687 0.93100 0.89809 0.93118 0.89392 0.89895 0.80473 0.85080 0.88445 0.87738 0.88029 0.87069 0.80540 0.90354 0.90426 0.90148 0.91435 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.23 9.46 37.16 0.35 -1.88 16 2 C -0.12 -1.94 4.66 -26.73 -0.12 -2.07 16 3 C 0.21 3.39 0.44 -131.78 -0.06 3.33 16 4 N -0.74 -14.71 3.11 -47.19 -0.15 -14.85 16 5 C -0.23 -5.77 8.81 -15.06 -0.13 -5.90 16 6 H 0.09 2.47 7.00 -52.49 -0.37 2.10 16 7 C 0.01 0.20 5.50 -17.43 -0.10 0.10 16 8 N -0.93 -27.67 13.97 55.49 0.78 -26.89 16 9 Si 0.88 20.64 27.78 -169.99 -4.72 15.92 16 10 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 11 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 12 H -0.28 -6.04 6.46 56.52 0.36 -5.68 16 13 C -0.13 -2.16 4.75 -26.61 -0.13 -2.28 16 14 C 0.12 1.98 6.17 -3.71 -0.02 1.96 16 15 N -0.59 -8.55 2.98 -174.15 -0.52 -9.07 16 16 C 0.56 8.32 7.34 -12.33 -0.09 8.23 16 17 O -0.53 -9.49 16.44 5.32 0.09 -9.41 16 18 C -0.24 -2.92 5.21 -104.69 -0.55 -3.46 16 19 C 0.18 2.12 8.63 -16.78 -0.14 1.97 16 20 N -0.51 -6.17 10.32 -10.40 -0.11 -6.28 16 21 C 0.36 4.08 7.31 -157.06 -1.15 2.93 16 22 C -0.11 -0.91 6.23 -91.77 -0.57 -1.49 16 23 C -0.15 -1.05 10.23 -26.73 -0.27 -1.33 16 24 C -0.15 -1.05 10.01 -26.73 -0.27 -1.32 16 25 N -0.52 -5.93 9.31 -10.39 -0.10 -6.02 16 26 C 0.20 2.34 11.02 -16.77 -0.18 2.15 16 27 C 0.10 1.24 4.96 -3.93 -0.02 1.22 16 28 C -0.13 -1.80 4.75 -26.83 -0.13 -1.92 16 29 H 0.07 1.42 7.23 -51.93 -0.38 1.04 16 30 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.04 0.56 6.41 -51.93 -0.33 0.23 16 32 H 0.07 1.21 7.23 -51.93 -0.38 0.83 16 33 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.36 7.18 4.23 -40.82 -0.17 7.01 16 35 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 36 H 0.08 1.50 7.58 -51.93 -0.39 1.11 16 37 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.09 1.65 7.74 -51.93 -0.40 1.25 16 39 H 0.08 1.38 7.03 -51.93 -0.36 1.02 16 40 H 0.18 1.80 6.61 -52.49 -0.35 1.45 16 41 H 0.13 0.99 8.14 -51.92 -0.42 0.57 16 42 H 0.10 0.75 8.14 -51.93 -0.42 0.32 16 43 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 44 H 0.10 0.52 8.14 -51.93 -0.42 0.09 16 45 H 0.11 0.88 7.53 -51.93 -0.39 0.49 16 46 H 0.18 1.74 8.06 -52.49 -0.42 1.31 16 47 H 0.08 0.86 4.20 -51.93 -0.22 0.64 16 48 H 0.08 1.06 6.88 -51.93 -0.36 0.70 16 49 H 0.08 1.03 6.45 -51.93 -0.34 0.70 16 50 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 LS Contribution 387.69 15.07 5.84 5.84 Total: -1.00 -30.39 387.69 -9.88 -40.26 By element: Atomic # 1 Polarization: 17.66 SS G_CDS: -7.41 Total: 10.25 kcal Atomic # 6 Polarization: 3.83 SS G_CDS: -3.58 Total: 0.25 kcal Atomic # 7 Polarization: -63.02 SS G_CDS: -0.09 Total: -63.12 kcal Atomic # 8 Polarization: -9.49 SS G_CDS: 0.09 Total: -9.41 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -4.72 Total: 15.92 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -30.39 -9.88 -40.26 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327477772.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.168 kcal (2) G-P(sol) polarization free energy of solvation -30.386 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.782 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.879 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.265 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.903 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds