Wall clock time and date at job start Wed Apr 1 2020 03:36:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.47274 * 2 1 4 4 N 1.46505 * 109.44731 * 305.39358 * 3 2 1 5 5 C 1.36935 * 120.00210 * 302.94084 * 4 3 2 6 6 H 1.08001 * 120.00065 * 4.61130 * 5 4 3 7 7 C 1.38807 * 119.99694 * 184.60731 * 5 4 3 8 8 N 1.31622 * 119.99721 * 180.02562 * 7 5 4 9 9 Si 1.86796 * 120.00498 * 0.02562 * 7 5 4 10 10 H 1.48506 * 109.47107 * 89.99665 * 9 7 5 11 11 H 1.48494 * 109.47439 * 209.99750 * 9 7 5 12 12 H 1.48502 * 109.47090 * 330.00124 * 9 7 5 13 13 C 1.53046 * 109.45982 * 185.43136 * 3 2 1 14 14 C 1.53187 * 109.31176 * 178.61194 * 13 3 2 15 15 N 1.46926 * 108.77676 * 54.63509 * 14 13 3 16 16 C 1.34776 * 120.62987 * 126.37046 * 15 14 13 17 17 O 1.21555 * 120.00077 * 4.23590 * 16 15 14 18 18 C 1.47834 * 119.99811 * 184.24349 * 16 15 14 19 19 C 1.39943 * 120.93812 * 314.77372 * 18 16 15 20 20 N 1.32148 * 118.92561 * 179.97438 * 19 18 16 21 21 C 1.31871 * 120.96351 * 0.02562 * 20 19 18 22 22 C 1.50703 * 118.95339 * 179.97438 * 21 20 19 23 23 C 1.52995 * 117.50109 * 119.99875 * 22 21 20 24 24 C 1.52997 * 117.50317 * 188.62415 * 22 21 20 25 25 N 1.31867 * 122.09927 * 0.27660 * 21 20 19 26 26 C 1.32154 * 120.96226 * 359.43480 * 25 21 20 27 27 C 1.46923 * 118.73988 * 306.64278 * 15 14 13 28 28 C 1.52766 * 109.00585 * 53.30547 * 27 15 14 29 29 H 1.08997 * 109.47111 * 63.09259 * 1 2 3 30 30 H 1.08997 * 109.47079 * 183.09936 * 1 2 3 31 31 H 1.09007 * 109.46729 * 303.09671 * 1 2 3 32 32 H 1.09001 * 109.46939 * 239.99539 * 2 1 3 33 33 H 1.08999 * 109.47156 * 119.99765 * 2 1 3 34 34 H 0.96997 * 119.99234 * 122.93587 * 4 3 2 35 35 H 0.97003 * 120.00124 * 180.02562 * 8 7 5 36 36 H 1.09007 * 109.49462 * 58.65864 * 13 3 2 37 37 H 1.08991 * 109.49903 * 298.56578 * 13 3 2 38 38 H 1.09004 * 109.58803 * 294.84661 * 14 13 3 39 39 H 1.08996 * 109.58978 * 174.42480 * 14 13 3 40 40 H 1.07996 * 120.54063 * 359.96189 * 19 18 16 41 41 H 1.09008 * 115.55683 * 334.30942 * 22 21 20 42 42 H 1.08996 * 117.49975 * 359.97438 * 23 22 21 43 43 H 1.08996 * 117.50090 * 214.98577 * 23 22 21 44 44 H 1.08993 * 117.49964 * 145.01436 * 24 22 21 45 45 H 1.09002 * 117.51302 * 359.97438 * 24 22 21 46 46 H 1.08000 * 120.53666 * 180.25312 * 26 25 21 47 47 H 1.08993 * 109.58963 * 173.14053 * 27 15 14 48 48 H 1.09006 * 109.58801 * 293.57338 * 27 15 14 49 49 H 1.09000 * 109.56031 * 185.54983 * 28 27 15 50 50 H 1.09000 * 109.35489 * 65.50304 * 28 27 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 1.4483 2.1691 -1.1262 5 6 1.6167 1.7064 -2.4039 6 1 2.1214 0.7672 -2.5761 7 6 1.1386 2.4445 -3.4779 8 7 1.3000 1.9995 -4.7061 9 14 0.2662 4.0692 -3.1803 10 1 1.2601 5.1727 -3.1842 11 1 -0.7326 4.2989 -4.2549 12 1 -0.4222 4.0278 -1.8651 13 6 3.5644 1.4443 -0.1366 14 6 4.0682 2.8905 -0.1711 15 7 3.5681 3.5941 1.0179 16 6 4.4170 4.2417 1.8403 17 8 5.5979 4.3132 1.5611 18 6 3.9119 4.8652 3.0820 19 6 2.7406 5.6309 3.0776 20 7 2.3249 6.1695 4.2105 21 6 2.9965 5.9942 5.3317 22 6 2.4817 6.6297 6.5975 23 6 2.1320 5.7015 7.7624 24 6 3.3843 6.5778 7.8318 25 7 4.1075 5.2855 5.3796 26 6 4.5919 4.7066 4.2948 27 6 2.1257 3.5730 1.2966 28 6 1.6430 2.1237 1.3115 29 1 -0.3633 0.4651 -0.9164 30 1 -0.3633 -1.0261 0.0556 31 1 -0.3633 0.5612 0.8610 32 1 1.8933 -0.5139 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 0.9372 2.9779 -0.9665 35 1 0.9663 2.5155 -5.4567 36 1 3.8475 0.9382 -1.0596 37 1 4.0065 0.9252 0.7137 38 1 3.6996 3.3846 -1.0701 39 1 5.1582 2.8980 -0.1685 40 1 2.1854 5.7794 2.1633 41 1 1.8668 7.5193 6.4607 42 1 2.2739 4.6312 7.6132 43 1 1.2871 5.9803 8.3920 44 1 3.3632 7.4332 8.5070 45 1 4.3504 6.0838 7.7288 46 1 5.5002 4.1242 4.3426 47 1 1.9343 4.0305 2.2672 48 1 1.5953 4.1238 0.5197 49 1 0.5586 2.1014 1.4194 50 1 2.1032 1.5983 2.1484 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001327477772.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:36:38 Heat of formation + Delta-G solvation = 48.294359 kcal Electronic energy + Delta-G solvation = -31135.911817 eV Core-core repulsion = 27164.189378 eV Total energy + Delta-G solvation = -3971.722439 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.62232 -41.22336 -39.56057 -37.97234 -36.49595 -34.98770 -34.45015 -33.58973 -32.11506 -31.83335 -31.13093 -27.49316 -26.15965 -26.03494 -25.21027 -24.26015 -23.23581 -23.18635 -22.28015 -21.20933 -19.77096 -19.71166 -19.12474 -18.29307 -18.10720 -17.25369 -16.53761 -16.37227 -16.27322 -16.12150 -15.59484 -15.50704 -15.26293 -15.13717 -14.90259 -14.77847 -14.60267 -14.42682 -14.23999 -13.60763 -13.37227 -13.21561 -12.99744 -12.92333 -12.76861 -12.60905 -12.34788 -12.33760 -12.20004 -12.07629 -11.98536 -11.88689 -11.75941 -11.61681 -11.51960 -11.41597 -11.13583 -10.92938 -10.83734 -10.49181 -10.36904 -9.77689 -9.15797 -7.90835 -5.22034 -0.68092 -0.17031 1.38496 1.42711 1.42930 1.50101 1.78282 2.35792 2.55531 2.60928 2.83162 3.12545 3.19807 3.31498 3.41832 3.56526 3.71258 3.77479 3.85985 3.91260 4.01495 4.03525 4.09363 4.16470 4.34845 4.36545 4.44431 4.50469 4.56352 4.61874 4.71518 4.76799 4.81418 4.81901 4.93004 4.99435 5.07222 5.09149 5.11502 5.18764 5.22797 5.29513 5.32263 5.32816 5.47826 5.61801 5.67228 5.69035 5.94176 6.25218 6.33316 6.82826 6.89104 7.20522 7.96227 8.14829 9.31125 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.014937 B = 0.002974 C = 0.002962 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1874.108127 B = 9414.247399 C = 9451.659177 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.119 4.119 3 C 0.202 3.798 4 N -0.736 5.736 5 C -0.190 4.190 6 H 0.060 0.940 7 C -0.067 4.067 8 N -0.989 5.989 9 Si 0.937 3.063 10 H -0.288 1.288 11 H -0.309 1.309 12 H -0.243 1.243 13 C -0.127 4.127 14 C 0.129 3.871 15 N -0.588 5.588 16 C 0.571 3.429 17 O -0.570 6.570 18 C -0.245 4.245 19 C 0.186 3.814 20 N -0.524 5.524 21 C 0.356 3.644 22 C -0.126 4.126 23 C -0.142 4.142 24 C -0.145 4.145 25 N -0.522 5.522 26 C 0.206 3.794 27 C 0.096 3.904 28 C -0.128 4.128 29 H 0.037 0.963 30 H 0.047 0.953 31 H 0.065 0.935 32 H 0.034 0.966 33 H 0.073 0.927 34 H 0.363 0.637 35 H 0.251 0.749 36 H 0.055 0.945 37 H 0.072 0.928 38 H 0.059 0.941 39 H 0.076 0.924 40 H 0.192 0.808 41 H 0.141 0.859 42 H 0.088 0.912 43 H 0.126 0.874 44 H 0.123 0.877 45 H 0.099 0.901 46 H 0.189 0.811 47 H 0.105 0.895 48 H 0.073 0.927 49 H 0.096 0.904 50 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.260 6.236 27.194 27.901 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.158 4.158 3 C 0.112 3.888 4 N -0.379 5.379 5 C -0.322 4.322 6 H 0.078 0.922 7 C -0.257 4.257 8 N -0.642 5.642 9 Si 0.767 3.233 10 H -0.215 1.215 11 H -0.237 1.237 12 H -0.168 1.168 13 C -0.167 4.167 14 C 0.007 3.993 15 N -0.319 5.319 16 C 0.358 3.642 17 O -0.450 6.450 18 C -0.252 4.252 19 C 0.019 3.981 20 N -0.238 5.238 21 C 0.092 3.908 22 C -0.146 4.146 23 C -0.180 4.180 24 C -0.183 4.183 25 N -0.236 5.236 26 C 0.039 3.961 27 C -0.027 4.027 28 C -0.166 4.166 29 H 0.057 0.943 30 H 0.066 0.934 31 H 0.084 0.916 32 H 0.052 0.948 33 H 0.091 0.909 34 H 0.198 0.802 35 H 0.060 0.940 36 H 0.074 0.926 37 H 0.091 0.909 38 H 0.078 0.922 39 H 0.094 0.906 40 H 0.209 0.791 41 H 0.158 0.842 42 H 0.107 0.893 43 H 0.144 0.856 44 H 0.141 0.859 45 H 0.118 0.882 46 H 0.206 0.794 47 H 0.122 0.878 48 H 0.091 0.909 49 H 0.114 0.886 50 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 0.589 6.571 27.720 28.494 hybrid contribution -0.079 0.342 -2.224 2.252 sum 0.509 6.914 25.495 26.421 Atomic orbital electron populations 1.21594 0.95563 1.00548 1.01565 1.21799 0.96734 0.96845 1.00422 1.19772 0.90594 0.91677 0.86737 1.42814 1.63142 1.29834 1.02128 1.18790 1.27995 1.02591 0.82805 0.92240 1.25319 1.03610 1.01853 0.94917 1.69872 1.54536 1.41198 0.98547 0.85666 0.78371 0.81416 0.77852 1.21534 1.23709 1.16751 1.22213 0.97940 0.95052 1.01505 1.21394 0.98963 0.92813 0.86159 1.48049 1.08099 1.50797 1.24945 1.18040 0.85228 0.78190 0.82727 1.90783 1.17565 1.61426 1.75268 1.21548 1.00759 1.06401 0.96524 1.23855 0.89949 0.86943 0.97315 1.68314 1.33701 1.22612 0.99134 1.22946 0.86081 0.88359 0.93448 1.20886 1.06776 1.02823 0.84109 1.23078 1.00506 0.96990 0.97446 1.23109 0.95645 1.03012 0.96489 1.68310 1.13509 1.10810 1.30930 1.23579 0.96631 0.90367 0.85494 1.22176 0.79140 0.98913 1.02425 1.22079 1.02865 0.94602 0.97047 0.94341 0.93379 0.91646 0.94750 0.90891 0.80235 0.94031 0.92582 0.90941 0.92230 0.90578 0.79118 0.84151 0.89325 0.85582 0.85923 0.88246 0.79394 0.87757 0.90859 0.88604 0.89309 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.00 9.46 71.98 0.68 -3.32 16 2 C -0.12 -3.61 4.66 30.60 0.14 -3.47 16 3 C 0.20 6.20 0.44 3.63 0.00 6.20 16 4 N -0.74 -28.69 3.11 -303.22 -0.94 -29.63 16 5 C -0.19 -9.63 8.81 84.03 0.74 -8.89 16 6 H 0.06 3.38 7.00 -2.91 -0.02 3.36 16 7 C -0.07 -3.69 5.50 84.86 0.47 -3.22 16 8 N -0.99 -61.60 13.97 21.65 0.30 -61.29 16 9 Si 0.94 43.12 27.78 68.60 1.91 45.03 16 10 H -0.29 -13.30 7.11 99.48 0.71 -12.59 16 11 H -0.31 -15.05 7.11 99.48 0.71 -14.34 16 12 H -0.24 -9.60 6.46 99.48 0.64 -8.95 16 13 C -0.13 -4.01 4.75 30.67 0.15 -3.87 16 14 C 0.13 4.20 6.17 86.36 0.53 4.74 16 15 N -0.59 -16.02 2.98 -823.17 -2.45 -18.47 16 16 C 0.57 15.94 7.34 86.78 0.64 16.58 16 17 O -0.57 -19.94 16.44 -3.89 -0.06 -20.00 16 18 C -0.24 -5.52 5.21 -19.91 -0.10 -5.63 16 19 C 0.19 3.81 8.63 85.06 0.73 4.54 16 20 N -0.52 -11.17 10.32 -186.80 -1.93 -13.09 16 21 C 0.36 7.19 7.31 138.71 1.01 8.20 16 22 C -0.13 -1.81 6.23 -11.54 -0.07 -1.88 16 23 C -0.14 -1.51 10.23 30.59 0.31 -1.19 16 24 C -0.14 -1.59 10.01 30.59 0.31 -1.28 16 25 N -0.52 -10.82 9.31 -186.79 -1.74 -12.56 16 26 C 0.21 4.31 11.02 85.06 0.94 5.25 16 27 C 0.10 2.15 4.96 86.22 0.43 2.57 16 28 C -0.13 -2.90 4.75 30.53 0.14 -2.76 16 29 H 0.04 1.41 7.23 -2.39 -0.02 1.39 16 30 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 31 H 0.06 1.59 6.41 -2.38 -0.02 1.57 16 32 H 0.03 1.25 7.23 -2.39 -0.02 1.24 16 33 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 34 H 0.36 13.76 4.23 -92.71 -0.39 13.37 16 35 H 0.25 15.20 8.31 -92.71 -0.77 14.43 16 36 H 0.06 2.08 7.58 -2.38 -0.02 2.06 16 37 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 38 H 0.06 2.28 7.74 -2.39 -0.02 2.26 16 39 H 0.08 2.58 7.03 -2.39 -0.02 2.56 16 40 H 0.19 3.27 6.61 -2.91 -0.02 3.25 16 41 H 0.14 1.72 8.14 -2.38 -0.02 1.70 16 42 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 43 H 0.13 0.80 8.14 -2.39 -0.02 0.78 16 44 H 0.12 0.82 8.14 -2.39 -0.02 0.80 16 45 H 0.10 1.36 7.53 -2.39 -0.02 1.34 16 46 H 0.19 3.36 8.06 -2.91 -0.02 3.34 16 47 H 0.10 1.87 4.20 -2.39 -0.01 1.86 16 48 H 0.07 1.76 6.88 -2.38 -0.02 1.74 16 49 H 0.10 1.97 6.45 -2.39 -0.02 1.95 16 50 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 Total: -1.00 -69.12 387.69 2.64 -66.48 By element: Atomic # 1 Polarization: 30.46 SS G_CDS: 0.51 Total: 30.98 kcal Atomic # 6 Polarization: 5.52 SS G_CDS: 7.05 Total: 12.57 kcal Atomic # 7 Polarization: -128.29 SS G_CDS: -6.76 Total: -135.05 kcal Atomic # 8 Polarization: -19.94 SS G_CDS: -0.06 Total: -20.00 kcal Atomic # 14 Polarization: 43.12 SS G_CDS: 1.91 Total: 45.03 kcal Total: -69.12 2.64 -66.48 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327477772.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.773 kcal (2) G-P(sol) polarization free energy of solvation -69.121 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.478 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.294 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds