Wall clock time and date at job start Wed Apr 1 2020 04:00:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53005 * 109.47223 * 2 1 4 4 C 1.52999 * 109.46945 * 179.97438 * 3 2 1 5 5 C 1.53004 * 109.46989 * 179.97438 * 4 3 2 6 6 H 1.09000 * 109.46662 * 55.00238 * 5 4 3 7 7 C 1.52996 * 109.47336 * 174.99994 * 5 4 3 8 8 N 1.46498 * 109.47059 * 175.00083 * 7 5 4 9 9 C 1.36943 * 119.99752 * 179.72430 * 8 7 5 10 10 H 1.08002 * 119.99793 * 0.27665 * 9 8 7 11 11 C 1.38811 * 120.00012 * 180.27737 * 9 8 7 12 12 N 1.31611 * 120.00081 * 180.02562 * 11 9 8 13 13 Si 1.86800 * 119.99814 * 0.02562 * 11 9 8 14 14 H 1.48501 * 109.47483 * 90.00178 * 13 11 9 15 15 H 1.48498 * 109.47011 * 210.00042 * 13 11 9 16 16 H 1.48502 * 109.47495 * 329.99664 * 13 11 9 17 17 N 1.46494 * 109.47171 * 295.00630 * 5 4 3 18 18 C 1.34779 * 120.00531 * 84.99693 * 17 5 4 19 19 O 1.21587 * 119.99641 * 0.02562 * 18 17 5 20 20 C 1.47589 * 120.00354 * 179.97438 * 18 17 5 21 21 C 1.36570 * 125.91876 * 179.97438 * 20 18 17 22 22 N 1.36200 * 107.09465 * 179.97438 * 21 20 18 23 23 C 1.36681 * 132.29694 * 180.02562 * 22 21 20 24 24 C 1.34851 * 120.64075 * 179.97438 * 23 22 21 25 25 C 1.50696 * 119.82741 * 180.02562 * 24 23 22 26 26 C 1.40568 * 120.33971 * 0.02562 * 24 23 22 27 27 C 1.35889 * 119.73542 * 359.97438 * 26 24 23 28 28 C 1.37270 * 107.34100 * 0.02562 * 22 21 20 29 29 N 1.32238 * 108.37510 * 359.75965 * 28 22 21 30 30 H 1.08995 * 109.47660 * 59.99809 * 1 2 3 31 31 H 1.09004 * 109.47196 * 180.02562 * 1 2 3 32 32 H 1.09010 * 109.47267 * 299.99850 * 1 2 3 33 33 H 1.09001 * 109.47387 * 239.99934 * 2 1 3 34 34 H 1.09002 * 109.47480 * 119.99855 * 2 1 3 35 35 H 1.08997 * 109.46805 * 60.00149 * 3 2 1 36 36 H 1.08995 * 109.46632 * 299.99912 * 3 2 1 37 37 H 1.08997 * 109.47199 * 60.00449 * 4 3 2 38 38 H 1.08995 * 109.47432 * 299.99480 * 4 3 2 39 39 H 1.09004 * 109.47066 * 55.00351 * 7 5 4 40 40 H 1.08994 * 109.46974 * 295.00498 * 7 5 4 41 41 H 0.97001 * 120.00384 * 0.02562 * 8 7 5 42 42 H 0.97008 * 120.00329 * 179.97438 * 12 11 9 43 43 H 0.97009 * 119.99912 * 264.99313 * 17 5 4 44 44 H 1.08001 * 126.45378 * 359.96899 * 21 20 18 45 45 H 1.07998 * 119.67615 * 0.02562 * 23 22 21 46 46 H 1.09003 * 109.46864 * 89.99758 * 25 24 23 47 47 H 1.09000 * 109.47087 * 209.99685 * 25 24 23 48 48 H 1.09003 * 109.47258 * 329.99710 * 25 24 23 49 49 H 1.08003 * 120.12931 * 179.97438 * 26 24 23 50 50 H 1.07998 * 120.32830 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 6 4.0800 2.8850 0.0000 6 1 3.6450 3.4245 0.8414 7 6 5.6048 2.8869 0.1264 8 7 6.1030 4.2593 0.0060 9 6 7.4464 4.5101 0.0937 10 1 8.1389 3.6957 0.2472 11 6 7.9180 5.8112 -0.0145 12 7 9.2092 6.0522 0.0693 13 14 6.7201 7.2199 -0.2792 14 1 6.2831 7.7520 1.0365 15 1 7.3871 8.2981 -1.0523 16 1 5.5379 6.7296 -1.0324 17 7 3.6929 3.5393 -1.2522 18 6 2.4756 4.1061 -1.3682 19 8 1.6989 4.0749 -0.4333 20 6 2.0859 4.7658 -2.6297 21 6 0.8893 5.3752 -2.8786 22 7 0.9404 5.8520 -4.1534 23 6 0.0367 6.5375 -4.9160 24 6 0.3394 6.9024 -6.1785 25 6 -0.6707 7.6583 -7.0028 26 6 1.5921 6.5813 -6.7294 27 6 2.5015 5.9001 -5.9842 28 6 2.1718 5.5241 -4.6638 29 7 2.8499 4.8752 -3.7322 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3634 0.5139 0.8901 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 1.6767 1.9563 0.8900 36 1 1.6766 1.9563 -0.8900 37 1 3.9337 0.9286 -0.8891 38 1 3.9329 0.9289 0.8908 39 1 6.0357 2.2733 -0.6648 40 1 5.8894 2.4808 1.0970 41 1 5.4810 4.9908 -0.1315 42 1 9.5388 6.9614 -0.0068 43 1 4.3127 3.5646 -1.9981 44 1 0.0588 5.4624 -2.1937 45 1 -0.9287 6.7901 -4.5032 46 1 -0.5332 8.7292 -6.8533 47 1 -0.5324 7.4178 -8.0569 48 1 -1.6769 7.3745 -6.6943 49 1 1.8307 6.8748 -7.7410 50 1 3.4667 5.6480 -6.3980 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001329887032.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:00:52 Heat of formation + Delta-G solvation = 48.560352 kcal Electronic energy + Delta-G solvation = -30098.334576 eV Core-core repulsion = 26126.623671 eV Total energy + Delta-G solvation = -3971.710905 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -43.04518 -39.72484 -37.97837 -36.50380 -34.96219 -34.05368 -33.47453 -32.51571 -31.32066 -30.53780 -29.16029 -27.69417 -27.07581 -24.41612 -24.01347 -23.09016 -22.36096 -21.89128 -20.70536 -20.56041 -19.96042 -18.37860 -17.63341 -17.07944 -16.54759 -16.32113 -16.11044 -15.31586 -15.24201 -14.84994 -14.74646 -14.43417 -14.21008 -14.04292 -13.91691 -13.66810 -13.38688 -13.00348 -12.94805 -12.73319 -12.68749 -12.63147 -12.11876 -12.01527 -11.94998 -11.61031 -11.38134 -11.30144 -11.26390 -10.95058 -10.86060 -10.80319 -10.46708 -10.31395 -10.26015 -10.04790 -9.83633 -9.55809 -8.99572 -8.87800 -8.63791 -8.14239 -7.20241 -5.73316 -3.08576 0.36144 0.95327 1.99263 2.23576 3.10359 3.40897 3.43182 3.49106 3.50365 3.64241 3.85890 4.14122 4.29585 4.42860 4.63991 4.64460 4.79838 4.91353 5.00240 5.06993 5.07872 5.11893 5.17743 5.24223 5.35829 5.44028 5.46487 5.49837 5.51159 5.57264 5.70252 5.78022 5.82254 5.86538 5.89163 5.94542 6.02650 6.11932 6.14893 6.20524 6.22210 6.25185 6.45085 6.48039 6.62502 6.67675 6.71554 6.91312 7.46375 7.89275 8.02441 8.44517 8.46669 9.24837 9.97524 10.16954 11.44963 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.006779 B = 0.004072 C = 0.002722 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4129.313140 B = 6875.290976 C =10283.302840 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.125 4.125 3 C -0.113 4.113 4 C -0.126 4.126 5 C 0.133 3.867 6 H 0.089 0.911 7 C 0.149 3.851 8 N -0.755 5.755 9 C -0.243 4.243 10 H 0.091 0.909 11 C 0.007 3.993 12 N -0.934 5.934 13 Si 0.880 3.120 14 H -0.285 1.285 15 H -0.291 1.291 16 H -0.276 1.276 17 N -0.694 5.694 18 C 0.599 3.401 19 O -0.539 6.539 20 C 0.011 3.989 21 C -0.022 4.022 22 N -0.362 5.362 23 C 0.047 3.953 24 C -0.105 4.105 25 C -0.104 4.104 26 C -0.104 4.104 27 C -0.066 4.066 28 C 0.220 3.780 29 N -0.456 5.456 30 H 0.050 0.950 31 H 0.048 0.952 32 H 0.053 0.947 33 H 0.055 0.945 34 H 0.058 0.942 35 H 0.066 0.934 36 H 0.063 0.937 37 H 0.064 0.936 38 H 0.073 0.927 39 H 0.033 0.967 40 H 0.043 0.957 41 H 0.363 0.637 42 H 0.259 0.741 43 H 0.413 0.587 44 H 0.195 0.805 45 H 0.163 0.837 46 H 0.076 0.924 47 H 0.075 0.925 48 H 0.070 0.930 49 H 0.144 0.856 50 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.021 -3.020 -13.919 27.927 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.163 4.163 3 C -0.150 4.150 4 C -0.165 4.165 5 C 0.029 3.971 6 H 0.107 0.893 7 C 0.022 3.978 8 N -0.401 5.401 9 C -0.373 4.373 10 H 0.109 0.891 11 C -0.188 4.188 12 N -0.582 5.582 13 Si 0.711 3.289 14 H -0.212 1.212 15 H -0.218 1.218 16 H -0.202 1.202 17 N -0.345 5.345 18 C 0.383 3.617 19 O -0.416 6.416 20 C -0.122 4.122 21 C -0.157 4.157 22 N -0.033 5.033 23 C -0.074 4.074 24 C -0.108 4.108 25 C -0.161 4.161 26 C -0.127 4.127 27 C -0.086 4.086 28 C -0.025 4.025 29 N -0.177 5.177 30 H 0.069 0.931 31 H 0.067 0.933 32 H 0.072 0.928 33 H 0.074 0.926 34 H 0.077 0.923 35 H 0.085 0.915 36 H 0.081 0.919 37 H 0.083 0.917 38 H 0.092 0.908 39 H 0.051 0.949 40 H 0.061 0.939 41 H 0.196 0.804 42 H 0.069 0.931 43 H 0.249 0.751 44 H 0.212 0.788 45 H 0.181 0.819 46 H 0.095 0.905 47 H 0.094 0.906 48 H 0.089 0.911 49 H 0.162 0.838 50 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -23.521 -3.425 -13.196 27.187 hybrid contribution -1.172 1.538 -0.448 1.985 sum -24.693 -1.887 -13.645 28.276 Atomic orbital electron populations 1.21739 0.96330 1.00821 1.01766 1.21568 0.95558 0.97717 1.01435 1.21673 0.94789 0.95414 1.03145 1.21972 0.96091 0.95971 1.02497 1.21438 0.96235 0.92891 0.86567 0.89279 1.20946 0.88924 0.88354 0.99616 1.42703 1.05434 1.02633 1.89297 1.19044 0.82099 0.94168 1.41950 0.89094 1.24624 0.95461 0.96880 1.01874 1.69697 1.11432 1.19857 1.57180 0.86600 0.81067 0.83312 0.77967 1.21163 1.21774 1.20186 1.45857 1.15601 1.55584 1.17411 1.16822 0.82335 0.77819 0.84697 1.90782 1.51862 1.60221 1.38769 1.20748 0.92116 1.04364 0.95018 1.22572 1.02339 1.05357 0.85442 1.42704 1.13587 1.35755 1.11296 1.21422 0.95242 0.98664 0.92039 1.19503 0.96916 1.00926 0.93443 1.20690 0.96580 0.99640 0.99222 1.20978 0.92432 0.98547 1.00776 1.20384 1.01284 0.98124 0.88841 1.20988 0.82832 1.02237 0.96476 1.70895 1.29102 1.18378 0.99303 0.93072 0.93324 0.92807 0.92576 0.92333 0.91483 0.91862 0.91714 0.90825 0.94881 0.93889 0.80377 0.93103 0.75061 0.78823 0.81924 0.90527 0.90610 0.91142 0.83841 0.82670 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.57 9.91 37.15 0.37 -1.20 16 2 C -0.13 -1.43 5.93 -26.73 -0.16 -1.58 16 3 C -0.11 -1.53 3.82 -26.73 -0.10 -1.64 16 4 C -0.13 -1.73 4.89 -26.73 -0.13 -1.86 16 5 C 0.13 2.23 2.41 -67.93 -0.16 2.06 16 6 H 0.09 1.61 7.58 -51.93 -0.39 1.22 16 7 C 0.15 2.90 5.82 -4.04 -0.02 2.88 16 8 N -0.75 -18.45 5.24 -59.91 -0.31 -18.76 16 9 C -0.24 -7.02 10.47 -15.06 -0.16 -7.17 16 10 H 0.09 2.78 8.06 -52.49 -0.42 2.35 16 11 C 0.01 0.22 5.50 -17.43 -0.10 0.13 16 12 N -0.93 -29.93 13.97 55.49 0.78 -29.16 16 13 Si 0.88 23.35 27.74 -169.99 -4.71 18.63 16 14 H -0.28 -7.54 7.11 56.52 0.40 -7.14 16 15 H -0.29 -7.76 7.11 56.52 0.40 -7.36 16 16 H -0.28 -7.14 6.52 56.52 0.37 -6.77 16 17 N -0.69 -11.98 4.47 -54.83 -0.24 -12.22 16 18 C 0.60 10.41 6.39 -12.44 -0.08 10.33 16 19 O -0.54 -9.85 14.01 5.29 0.07 -9.77 16 20 C 0.01 0.18 6.94 -83.45 -0.58 -0.40 16 21 C -0.02 -0.29 11.47 -16.21 -0.19 -0.47 16 22 N -0.36 -4.37 2.93 -62.37 -0.18 -4.55 16 23 C 0.05 0.39 10.54 -16.59 -0.17 0.22 16 24 C -0.10 -0.73 5.85 -104.95 -0.61 -1.34 16 25 C -0.10 -0.38 10.00 36.00 0.36 -0.02 16 26 C -0.10 -0.78 9.73 -39.55 -0.38 -1.16 16 27 C -0.07 -0.69 10.11 -39.30 -0.40 -1.09 16 28 C 0.22 3.05 7.80 -156.04 -1.22 1.84 16 29 N -0.46 -7.58 11.01 -9.35 -0.10 -7.69 16 30 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.05 0.57 8.14 -51.92 -0.42 0.14 16 33 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.07 0.99 7.85 -51.93 -0.41 0.58 16 36 H 0.06 0.96 5.64 -51.93 -0.29 0.67 16 37 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 38 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 39 H 0.03 0.64 8.14 -51.93 -0.42 0.21 16 40 H 0.04 0.83 8.14 -51.93 -0.42 0.40 16 41 H 0.36 9.02 5.20 -40.82 -0.21 8.81 16 42 H 0.26 7.92 8.31 -40.82 -0.34 7.58 16 43 H 0.41 7.37 8.30 -40.82 -0.34 7.03 16 44 H 0.19 2.08 8.06 -52.49 -0.42 1.65 16 45 H 0.16 0.84 8.06 -52.49 -0.42 0.42 16 46 H 0.08 0.25 8.14 -51.93 -0.42 -0.17 16 47 H 0.07 0.21 8.09 -51.93 -0.42 -0.21 16 48 H 0.07 0.19 8.07 -51.93 -0.42 -0.23 16 49 H 0.14 0.65 8.06 -52.48 -0.42 0.23 16 50 H 0.16 1.38 8.06 -52.49 -0.42 0.96 16 LS Contribution 408.41 15.07 6.15 6.15 Total: -1.00 -35.73 408.41 -10.29 -46.01 By element: Atomic # 1 Polarization: 19.85 SS G_CDS: -7.99 Total: 11.85 kcal Atomic # 6 Polarization: 3.24 SS G_CDS: -3.74 Total: -0.50 kcal Atomic # 7 Polarization: -72.31 SS G_CDS: -0.07 Total: -72.38 kcal Atomic # 8 Polarization: -9.85 SS G_CDS: 0.07 Total: -9.77 kcal Atomic # 14 Polarization: 23.35 SS G_CDS: -4.71 Total: 18.63 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -35.73 -10.29 -46.01 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329887032.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.572 kcal (2) G-P(sol) polarization free energy of solvation -35.726 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.846 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.286 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.012 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds