Wall clock time and date at job start Wed Apr 1 2020 04:00:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53005 * 109.47223 * 2 1 4 4 C 1.52999 * 109.46945 * 179.97438 * 3 2 1 5 5 C 1.53004 * 109.46989 * 179.97438 * 4 3 2 6 6 H 1.09000 * 109.46662 * 55.00238 * 5 4 3 7 7 C 1.52996 * 109.47336 * 174.99994 * 5 4 3 8 8 N 1.46498 * 109.47059 * 175.00083 * 7 5 4 9 9 C 1.36943 * 119.99752 * 179.72430 * 8 7 5 10 10 H 1.08002 * 119.99793 * 0.27665 * 9 8 7 11 11 C 1.38811 * 120.00012 * 180.27737 * 9 8 7 12 12 N 1.31611 * 120.00081 * 180.02562 * 11 9 8 13 13 Si 1.86800 * 119.99814 * 0.02562 * 11 9 8 14 14 H 1.48501 * 109.47483 * 90.00178 * 13 11 9 15 15 H 1.48498 * 109.47011 * 210.00042 * 13 11 9 16 16 H 1.48502 * 109.47495 * 329.99664 * 13 11 9 17 17 N 1.46494 * 109.47171 * 295.00630 * 5 4 3 18 18 C 1.34779 * 120.00531 * 84.99693 * 17 5 4 19 19 O 1.21587 * 119.99641 * 0.02562 * 18 17 5 20 20 C 1.47589 * 120.00354 * 179.97438 * 18 17 5 21 21 C 1.36570 * 125.91876 * 179.97438 * 20 18 17 22 22 N 1.36200 * 107.09465 * 179.97438 * 21 20 18 23 23 C 1.36681 * 132.29694 * 180.02562 * 22 21 20 24 24 C 1.34851 * 120.64075 * 179.97438 * 23 22 21 25 25 C 1.50696 * 119.82741 * 180.02562 * 24 23 22 26 26 C 1.40568 * 120.33971 * 0.02562 * 24 23 22 27 27 C 1.35889 * 119.73542 * 359.97438 * 26 24 23 28 28 C 1.37270 * 107.34100 * 0.02562 * 22 21 20 29 29 N 1.32238 * 108.37510 * 359.75965 * 28 22 21 30 30 H 1.08995 * 109.47660 * 59.99809 * 1 2 3 31 31 H 1.09004 * 109.47196 * 180.02562 * 1 2 3 32 32 H 1.09010 * 109.47267 * 299.99850 * 1 2 3 33 33 H 1.09001 * 109.47387 * 239.99934 * 2 1 3 34 34 H 1.09002 * 109.47480 * 119.99855 * 2 1 3 35 35 H 1.08997 * 109.46805 * 60.00149 * 3 2 1 36 36 H 1.08995 * 109.46632 * 299.99912 * 3 2 1 37 37 H 1.08997 * 109.47199 * 60.00449 * 4 3 2 38 38 H 1.08995 * 109.47432 * 299.99480 * 4 3 2 39 39 H 1.09004 * 109.47066 * 55.00351 * 7 5 4 40 40 H 1.08994 * 109.46974 * 295.00498 * 7 5 4 41 41 H 0.97001 * 120.00384 * 0.02562 * 8 7 5 42 42 H 0.97008 * 120.00329 * 179.97438 * 12 11 9 43 43 H 0.97009 * 119.99912 * 264.99313 * 17 5 4 44 44 H 1.08001 * 126.45378 * 359.96899 * 21 20 18 45 45 H 1.07998 * 119.67615 * 0.02562 * 23 22 21 46 46 H 1.09003 * 109.46864 * 89.99758 * 25 24 23 47 47 H 1.09000 * 109.47087 * 209.99685 * 25 24 23 48 48 H 1.09003 * 109.47258 * 329.99710 * 25 24 23 49 49 H 1.08003 * 120.12931 * 179.97438 * 26 24 23 50 50 H 1.07998 * 120.32830 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 6 4.0800 2.8850 0.0000 6 1 3.6450 3.4245 0.8414 7 6 5.6048 2.8869 0.1264 8 7 6.1030 4.2593 0.0060 9 6 7.4464 4.5101 0.0937 10 1 8.1389 3.6957 0.2472 11 6 7.9180 5.8112 -0.0145 12 7 9.2092 6.0522 0.0693 13 14 6.7201 7.2199 -0.2792 14 1 6.2831 7.7520 1.0365 15 1 7.3871 8.2981 -1.0523 16 1 5.5379 6.7296 -1.0324 17 7 3.6929 3.5393 -1.2522 18 6 2.4756 4.1061 -1.3682 19 8 1.6989 4.0749 -0.4333 20 6 2.0859 4.7658 -2.6297 21 6 0.8893 5.3752 -2.8786 22 7 0.9404 5.8520 -4.1534 23 6 0.0367 6.5375 -4.9160 24 6 0.3394 6.9024 -6.1785 25 6 -0.6707 7.6583 -7.0028 26 6 1.5921 6.5813 -6.7294 27 6 2.5015 5.9001 -5.9842 28 6 2.1718 5.5241 -4.6638 29 7 2.8499 4.8752 -3.7322 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3634 0.5139 0.8901 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 1.6767 1.9563 0.8900 36 1 1.6766 1.9563 -0.8900 37 1 3.9337 0.9286 -0.8891 38 1 3.9329 0.9289 0.8908 39 1 6.0357 2.2733 -0.6648 40 1 5.8894 2.4808 1.0970 41 1 5.4810 4.9908 -0.1315 42 1 9.5388 6.9614 -0.0068 43 1 4.3127 3.5646 -1.9981 44 1 0.0588 5.4624 -2.1937 45 1 -0.9287 6.7901 -4.5032 46 1 -0.5332 8.7292 -6.8533 47 1 -0.5324 7.4178 -8.0569 48 1 -1.6769 7.3745 -6.6943 49 1 1.8307 6.8748 -7.7410 50 1 3.4667 5.6480 -6.3980 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001329887032.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:00:50 Heat of formation + Delta-G solvation = 26.307675 kcal Electronic energy + Delta-G solvation = -30099.299524 eV Core-core repulsion = 26126.623671 eV Total energy + Delta-G solvation = -3972.675853 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -43.94896 -41.00901 -38.78344 -37.89438 -36.35606 -35.22270 -34.79184 -33.43724 -33.04927 -31.85234 -30.07026 -29.05557 -27.84676 -25.83694 -25.06861 -24.00615 -23.56747 -23.14250 -21.94778 -21.76636 -21.19823 -19.82902 -19.21572 -17.96717 -17.63334 -17.38029 -17.17026 -16.75135 -16.30189 -16.12705 -15.78274 -15.71466 -15.56393 -15.13989 -14.88724 -14.78118 -14.54498 -14.43135 -14.23289 -13.93454 -13.71732 -13.32179 -13.28337 -13.20562 -12.99159 -12.95262 -12.63492 -12.48842 -12.48005 -12.19176 -12.00815 -11.96275 -11.90062 -11.86110 -11.51538 -11.46870 -11.36790 -11.14102 -11.02674 -10.07464 -9.77373 -9.34386 -8.97616 -8.07231 -5.39060 -0.39502 0.13659 0.94896 1.30451 1.31413 1.38538 1.39425 2.17325 2.25353 2.41288 2.51588 2.97634 3.25116 3.34725 3.46650 3.64548 3.82717 3.87166 3.95253 4.06701 4.06956 4.13437 4.22015 4.28690 4.31640 4.41860 4.51094 4.58450 4.67819 4.75865 4.81974 4.87747 4.88843 4.92856 4.98259 5.01274 5.05896 5.13090 5.18866 5.21267 5.26040 5.29148 5.32882 5.39578 5.51800 5.54642 5.59514 5.72669 5.90051 6.17178 6.37933 6.64649 7.02622 7.13534 7.79005 7.96640 9.14322 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.006779 B = 0.004072 C = 0.002722 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4129.313140 B = 6875.290976 C =10283.302840 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.122 4.122 3 C -0.105 4.105 4 C -0.118 4.118 5 C 0.143 3.857 6 H 0.075 0.925 7 C 0.148 3.852 8 N -0.758 5.758 9 C -0.227 4.227 10 H 0.067 0.933 11 C -0.054 4.054 12 N -0.978 5.978 13 Si 0.945 3.055 14 H -0.281 1.281 15 H -0.291 1.291 16 H -0.270 1.270 17 N -0.698 5.698 18 C 0.598 3.402 19 O -0.555 6.555 20 C -0.026 4.026 21 C -0.018 4.018 22 N -0.362 5.362 23 C 0.031 3.969 24 C -0.098 4.098 25 C -0.102 4.102 26 C -0.077 4.077 27 C -0.102 4.102 28 C 0.207 3.793 29 N -0.503 5.503 30 H 0.043 0.957 31 H 0.065 0.935 32 H 0.050 0.950 33 H 0.060 0.940 34 H 0.070 0.930 35 H 0.052 0.948 36 H 0.044 0.956 37 H 0.072 0.928 38 H 0.091 0.909 39 H 0.040 0.960 40 H 0.052 0.948 41 H 0.362 0.638 42 H 0.258 0.742 43 H 0.409 0.591 44 H 0.215 0.785 45 H 0.196 0.804 46 H 0.086 0.914 47 H 0.091 0.909 48 H 0.084 0.916 49 H 0.180 0.820 50 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.180 -2.488 -15.887 31.580 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.159 4.159 3 C -0.142 4.142 4 C -0.157 4.157 5 C 0.038 3.962 6 H 0.093 0.907 7 C 0.022 3.978 8 N -0.404 5.404 9 C -0.358 4.358 10 H 0.085 0.915 11 C -0.246 4.246 12 N -0.629 5.629 13 Si 0.774 3.226 14 H -0.208 1.208 15 H -0.218 1.218 16 H -0.196 1.196 17 N -0.348 5.348 18 C 0.384 3.616 19 O -0.435 6.435 20 C -0.159 4.159 21 C -0.154 4.154 22 N -0.033 5.033 23 C -0.089 4.089 24 C -0.100 4.100 25 C -0.159 4.159 26 C -0.100 4.100 27 C -0.122 4.122 28 C -0.039 4.039 29 N -0.225 5.225 30 H 0.062 0.938 31 H 0.084 0.916 32 H 0.069 0.931 33 H 0.079 0.921 34 H 0.088 0.912 35 H 0.071 0.929 36 H 0.063 0.937 37 H 0.090 0.910 38 H 0.109 0.891 39 H 0.058 0.942 40 H 0.070 0.930 41 H 0.195 0.805 42 H 0.067 0.933 43 H 0.244 0.756 44 H 0.232 0.768 45 H 0.212 0.788 46 H 0.105 0.895 47 H 0.110 0.890 48 H 0.103 0.897 49 H 0.198 0.802 50 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -26.727 -2.923 -15.168 30.870 hybrid contribution -0.270 1.375 -0.003 1.401 sum -26.997 -1.548 -15.170 31.006 Atomic orbital electron populations 1.21728 0.95679 1.01816 1.01316 1.21542 0.96154 0.95999 1.02224 1.21551 0.94444 0.96741 1.01496 1.21926 0.96245 0.93867 1.03665 1.21319 0.94047 0.94692 0.86114 0.90698 1.21128 0.90840 0.85792 1.00085 1.42739 1.03766 1.04742 1.89126 1.19073 0.83656 0.93415 1.39683 0.91457 1.25296 0.96927 0.99415 1.02977 1.69839 1.13298 1.20312 1.59432 0.85562 0.79010 0.80205 0.77848 1.20753 1.21791 1.19620 1.45876 1.15733 1.55969 1.17190 1.17032 0.81987 0.77424 0.85158 1.90749 1.52183 1.60998 1.39526 1.20678 0.93705 1.06582 0.94897 1.22793 1.01842 1.04517 0.86255 1.42843 1.13721 1.35710 1.10977 1.22183 0.95920 0.98281 0.92513 1.20045 0.97261 0.99593 0.93108 1.20805 0.96130 0.99560 0.99390 1.21510 0.91597 0.95227 1.01687 1.20636 1.02817 1.00597 0.88158 1.21479 0.83400 1.01824 0.97215 1.70774 1.30681 1.20759 1.00249 0.93771 0.91580 0.93055 0.92077 0.91167 0.92914 0.93746 0.90979 0.89086 0.94157 0.93022 0.80537 0.93273 0.75575 0.76826 0.78757 0.89510 0.89047 0.89699 0.80242 0.82186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.93 9.91 71.98 0.71 -2.22 16 2 C -0.12 -2.60 5.93 30.59 0.18 -2.42 16 3 C -0.10 -2.82 3.82 30.60 0.12 -2.70 16 4 C -0.12 -3.17 4.89 30.60 0.15 -3.02 16 5 C 0.14 4.81 2.41 44.99 0.11 4.92 16 6 H 0.07 2.76 7.58 -2.39 -0.02 2.74 16 7 C 0.15 5.75 5.82 86.38 0.50 6.25 16 8 N -0.76 -37.41 5.24 -343.46 -1.80 -39.21 16 9 C -0.23 -13.37 10.47 84.03 0.88 -12.49 16 10 H 0.07 4.23 8.06 -2.91 -0.02 4.20 16 11 C -0.05 -3.32 5.50 84.86 0.47 -2.86 16 12 N -0.98 -64.14 13.97 21.65 0.30 -63.84 16 13 Si 0.94 49.33 27.74 68.60 1.90 51.24 16 14 H -0.28 -14.40 7.11 99.48 0.71 -13.69 16 15 H -0.29 -15.12 7.11 99.48 0.71 -14.41 16 16 H -0.27 -13.73 6.52 99.48 0.65 -13.09 16 17 N -0.70 -24.78 4.47 -445.65 -1.99 -26.77 16 18 C 0.60 21.50 6.39 86.71 0.55 22.05 16 19 O -0.56 -20.86 14.01 -3.99 -0.06 -20.92 16 20 C -0.03 -0.88 6.94 40.80 0.28 -0.60 16 21 C -0.02 -0.47 11.47 83.62 0.96 0.49 16 22 N -0.36 -8.41 2.93 -351.24 -1.03 -9.44 16 23 C 0.03 0.43 10.54 83.16 0.88 1.31 16 24 C -0.10 -1.00 5.85 -20.08 -0.12 -1.12 16 25 C -0.10 -0.26 10.00 71.23 0.71 0.45 16 26 C -0.08 -0.91 9.73 22.29 0.22 -0.69 16 27 C -0.10 -2.02 10.11 22.45 0.23 -1.80 16 28 C 0.21 5.76 7.80 134.20 1.05 6.81 16 29 N -0.50 -17.39 11.01 -183.49 -2.02 -19.41 16 30 H 0.04 0.92 8.14 -2.39 -0.02 0.90 16 31 H 0.07 1.07 8.14 -2.38 -0.02 1.05 16 32 H 0.05 1.03 8.14 -2.38 -0.02 1.01 16 33 H 0.06 1.25 8.14 -2.39 -0.02 1.24 16 34 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 35 H 0.05 1.56 7.85 -2.39 -0.02 1.54 16 36 H 0.04 1.37 5.64 -2.39 -0.01 1.36 16 37 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 38 H 0.09 2.13 8.14 -2.39 -0.02 2.11 16 39 H 0.04 1.54 8.14 -2.38 -0.02 1.52 16 40 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 41 H 0.36 18.07 5.20 -92.71 -0.48 17.59 16 42 H 0.26 16.15 8.31 -92.70 -0.77 15.38 16 43 H 0.41 15.17 8.30 -92.70 -0.77 14.40 16 44 H 0.22 4.47 8.06 -2.91 -0.02 4.45 16 45 H 0.20 1.31 8.06 -2.91 -0.02 1.29 16 46 H 0.09 0.15 8.14 -2.39 -0.02 0.13 16 47 H 0.09 0.02 8.09 -2.39 -0.02 0.00 16 48 H 0.08 0.04 8.07 -2.39 -0.02 0.02 16 49 H 0.18 0.80 8.06 -2.91 -0.02 0.77 16 50 H 0.16 2.83 8.06 -2.91 -0.02 2.80 16 Total: -1.00 -80.43 408.41 2.83 -77.60 By element: Atomic # 1 Polarization: 38.77 SS G_CDS: -0.36 Total: 38.41 kcal Atomic # 6 Polarization: 4.47 SS G_CDS: 7.88 Total: 12.35 kcal Atomic # 7 Polarization: -152.14 SS G_CDS: -6.54 Total: -158.68 kcal Atomic # 8 Polarization: -20.86 SS G_CDS: -0.06 Total: -20.92 kcal Atomic # 14 Polarization: 49.33 SS G_CDS: 1.90 Total: 51.24 kcal Total: -80.43 2.83 -77.60 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329887032.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.907 kcal (2) G-P(sol) polarization free energy of solvation -80.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.481 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.826 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.599 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds