Wall clock time and date at job start Wed Apr 1 2020 04:00:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53007 * 109.47025 * 2 1 4 4 C 1.52994 * 109.47025 * 179.97438 * 3 2 1 5 5 C 1.53003 * 109.47306 * 179.97438 * 4 3 2 6 6 H 1.09002 * 109.46892 * 305.00508 * 5 4 3 7 7 C 1.52996 * 109.47530 * 184.99714 * 5 4 3 8 8 N 1.46498 * 109.47059 * 184.99929 * 7 5 4 9 9 C 1.36943 * 119.99752 * 179.72430 * 8 7 5 10 10 H 1.08002 * 119.99793 * 0.27665 * 9 8 7 11 11 C 1.38811 * 120.00012 * 180.27737 * 9 8 7 12 12 N 1.31624 * 119.99698 * 0.02562 * 11 9 8 13 13 Si 1.86795 * 120.00072 * 180.02562 * 11 9 8 14 14 H 1.48503 * 109.47294 * 90.00155 * 13 11 9 15 15 H 1.48499 * 109.47218 * 210.00015 * 13 11 9 16 16 H 1.48496 * 109.47166 * 329.99846 * 13 11 9 17 17 N 1.46506 * 109.46609 * 64.99913 * 5 4 3 18 18 C 1.34782 * 119.99726 * 274.99704 * 17 5 4 19 19 O 1.21583 * 120.00249 * 0.02562 * 18 17 5 20 20 C 1.47586 * 119.99668 * 179.97438 * 18 17 5 21 21 C 1.36574 * 125.91862 * 179.71642 * 20 18 17 22 22 N 1.36194 * 107.09574 * 179.84469 * 21 20 18 23 23 C 1.36677 * 132.29616 * 180.10910 * 22 21 20 24 24 C 1.34848 * 120.64080 * 180.31933 * 23 22 21 25 25 C 1.50699 * 119.82733 * 180.02562 * 24 23 22 26 26 C 1.40566 * 120.34419 * 0.02562 * 24 23 22 27 27 C 1.35895 * 119.72691 * 0.02562 * 26 24 23 28 28 C 1.37271 * 107.34307 * 0.42315 * 22 21 20 29 29 N 1.32235 * 108.37321 * 359.73092 * 28 22 21 30 30 H 1.09001 * 109.46772 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47619 * 300.00358 * 1 2 3 32 32 H 1.09003 * 109.47243 * 60.00697 * 1 2 3 33 33 H 1.09001 * 109.47619 * 239.99641 * 2 1 3 34 34 H 1.09003 * 109.47243 * 119.99303 * 2 1 3 35 35 H 1.08994 * 109.47070 * 59.99773 * 3 2 1 36 36 H 1.09003 * 109.46541 * 299.99733 * 3 2 1 37 37 H 1.09001 * 109.47619 * 59.99641 * 4 3 2 38 38 H 1.09003 * 109.47243 * 299.99303 * 4 3 2 39 39 H 1.09004 * 109.47066 * 65.00196 * 7 5 4 40 40 H 1.08994 * 109.46974 * 305.00344 * 7 5 4 41 41 H 0.97001 * 120.00384 * 0.02562 * 8 7 5 42 42 H 0.96999 * 119.99739 * 180.02562 * 12 11 9 43 43 H 0.97000 * 120.00390 * 95.00648 * 17 5 4 44 44 H 1.08002 * 126.45017 * 0.02562 * 21 20 18 45 45 H 1.07999 * 119.68010 * 0.35004 * 23 22 21 46 46 H 1.09006 * 109.47538 * 90.00422 * 25 24 23 47 47 H 1.09002 * 109.47086 * 210.00196 * 25 24 23 48 48 H 1.08995 * 109.47391 * 329.99800 * 25 24 23 49 49 H 1.08002 * 120.13646 * 180.02562 * 26 24 23 50 50 H 1.08003 * 120.32383 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5699 1.4426 0.0006 5 6 4.0799 2.8851 0.0000 6 1 3.6456 3.4236 -0.8423 7 6 5.6048 2.8869 -0.1250 8 7 6.1029 4.2594 -0.0058 9 6 7.4473 4.5089 -0.0814 10 1 8.1399 3.6943 -0.2333 11 6 7.9197 5.8087 0.0373 12 7 7.0755 6.8014 0.2229 13 14 9.7535 6.1491 -0.0665 14 1 10.1302 6.4056 -1.4799 15 1 10.0834 7.3397 0.7575 16 1 10.5047 4.9728 0.4404 17 7 3.6918 3.5407 1.2513 18 6 2.4744 4.1078 1.3655 19 8 1.6982 4.0747 0.4303 20 6 2.0831 4.7678 2.6263 21 6 0.8885 5.3825 2.8717 22 7 0.9357 5.8541 4.1485 23 6 0.0309 6.5393 4.9100 24 6 0.3315 6.9033 6.1731 25 6 -0.6802 7.6579 6.9966 26 6 1.5835 6.5826 6.7257 27 6 2.4945 5.9025 5.9811 28 6 2.1666 5.5266 4.6604 29 7 2.8440 4.8733 3.7314 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8899 32 1 -0.3634 0.5137 -0.8901 33 1 1.8934 -0.5139 -0.8899 34 1 1.8933 -0.5137 0.8901 35 1 1.6766 1.9564 0.8899 36 1 1.6766 1.9563 -0.8901 37 1 3.9337 0.9286 -0.8891 38 1 3.9329 0.9290 0.8909 39 1 5.8903 2.4797 -1.0950 40 1 6.0350 2.2741 0.6671 41 1 5.4808 4.9910 0.1309 42 1 7.4056 7.7097 0.3054 43 1 4.3109 3.5669 1.9976 44 1 0.0610 5.4746 2.1838 45 1 -0.9343 6.7912 4.4962 46 1 -1.3050 6.9507 7.5421 47 1 -0.1624 8.3059 7.7038 48 1 -1.3049 8.2630 6.3396 49 1 1.8206 6.8754 7.7379 50 1 3.4592 5.6507 6.3962 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001329887034.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:00:55 Heat of formation + Delta-G solvation = 45.153884 kcal Electronic energy + Delta-G solvation = -29936.584673 eV Core-core repulsion = 25964.726053 eV Total energy + Delta-G solvation = -3971.858620 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.91040 -39.55665 -37.85436 -36.34091 -34.82743 -33.92268 -33.35902 -32.40688 -31.12516 -30.24139 -29.02805 -27.44954 -26.85641 -24.30120 -23.97442 -22.95933 -22.24765 -22.15010 -20.65958 -20.37686 -19.79544 -18.22496 -17.13321 -16.95394 -16.40968 -16.18645 -15.97975 -15.19652 -15.14783 -14.72705 -14.61861 -14.48708 -14.06683 -13.85809 -13.78257 -13.51983 -13.23831 -13.10203 -12.85368 -12.65398 -12.56424 -12.53327 -11.99429 -11.84433 -11.84277 -11.47600 -11.23669 -11.14997 -11.00435 -10.84894 -10.77304 -10.72612 -10.34055 -10.28055 -10.21810 -9.93904 -9.67637 -9.65064 -8.86129 -8.83546 -8.46797 -8.01442 -6.87209 -5.69526 -2.99176 0.48008 1.07716 2.14465 2.36495 3.23021 3.47532 3.52226 3.54289 3.57270 3.81697 3.98705 4.25897 4.40507 4.53500 4.62672 4.75979 4.93806 5.01537 5.11958 5.13589 5.16308 5.23483 5.26482 5.36220 5.49192 5.54928 5.55407 5.61296 5.62627 5.63583 5.81858 5.90673 5.95359 5.96943 6.03973 6.05845 6.11196 6.24471 6.26580 6.29258 6.36918 6.41768 6.55556 6.57675 6.72218 6.79949 6.84731 7.06613 7.61227 7.75033 8.06976 8.47785 8.63550 9.59480 10.16609 10.51864 11.52669 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.006615 B = 0.003668 C = 0.002487 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4232.058720 B = 7631.233261 C =11257.057653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.125 4.125 3 C -0.112 4.112 4 C -0.127 4.127 5 C 0.137 3.863 6 H 0.088 0.912 7 C 0.145 3.855 8 N -0.731 5.731 9 C -0.241 4.241 10 H 0.070 0.930 11 C -0.013 4.013 12 N -0.929 5.929 13 Si 0.907 3.093 14 H -0.291 1.291 15 H -0.292 1.292 16 H -0.282 1.282 17 N -0.689 5.689 18 C 0.601 3.399 19 O -0.541 6.541 20 C 0.016 3.984 21 C -0.023 4.023 22 N -0.362 5.362 23 C 0.048 3.952 24 C -0.107 4.107 25 C -0.103 4.103 26 C -0.106 4.106 27 C -0.065 4.065 28 C 0.219 3.781 29 N -0.453 5.453 30 H 0.047 0.953 31 H 0.050 0.950 32 H 0.053 0.947 33 H 0.057 0.943 34 H 0.055 0.945 35 H 0.063 0.937 36 H 0.067 0.933 37 H 0.071 0.929 38 H 0.062 0.938 39 H 0.034 0.966 40 H 0.024 0.976 41 H 0.387 0.613 42 H 0.254 0.746 43 H 0.413 0.587 44 H 0.194 0.806 45 H 0.163 0.837 46 H 0.075 0.925 47 H 0.075 0.925 48 H 0.069 0.931 49 H 0.143 0.857 50 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.142 -4.495 13.198 23.681 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.163 4.163 3 C -0.150 4.150 4 C -0.166 4.166 5 C 0.033 3.967 6 H 0.107 0.893 7 C 0.016 3.984 8 N -0.376 5.376 9 C -0.372 4.372 10 H 0.088 0.912 11 C -0.209 4.209 12 N -0.578 5.578 13 Si 0.738 3.262 14 H -0.218 1.218 15 H -0.219 1.219 16 H -0.208 1.208 17 N -0.339 5.339 18 C 0.385 3.615 19 O -0.419 6.419 20 C -0.118 4.118 21 C -0.158 4.158 22 N -0.034 5.034 23 C -0.073 4.073 24 C -0.110 4.110 25 C -0.161 4.161 26 C -0.129 4.129 27 C -0.085 4.085 28 C -0.026 4.026 29 N -0.174 5.174 30 H 0.066 0.934 31 H 0.070 0.930 32 H 0.072 0.928 33 H 0.076 0.924 34 H 0.074 0.926 35 H 0.082 0.918 36 H 0.085 0.915 37 H 0.089 0.911 38 H 0.081 0.919 39 H 0.052 0.948 40 H 0.042 0.958 41 H 0.221 0.779 42 H 0.064 0.936 43 H 0.249 0.751 44 H 0.211 0.789 45 H 0.180 0.820 46 H 0.093 0.907 47 H 0.093 0.907 48 H 0.088 0.912 49 H 0.160 0.840 50 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -18.713 -4.887 12.491 23.024 hybrid contribution 0.397 0.949 0.233 1.055 sum -18.316 -3.938 12.724 22.647 Atomic orbital electron populations 1.21739 0.96348 1.00754 1.01806 1.21572 0.95545 0.97818 1.01337 1.21672 0.94834 0.95277 1.03214 1.21981 0.96066 0.96283 1.02222 1.21359 0.96162 0.92445 0.86754 0.89347 1.20962 0.89209 0.89431 0.98751 1.42351 1.05383 1.02018 1.87799 1.19206 0.83636 0.92478 1.41852 0.91174 1.24751 0.97577 0.95727 1.02826 1.69687 1.32771 0.98957 1.56348 0.86194 0.85268 0.77365 0.77365 1.21804 1.21858 1.20775 1.45777 1.15497 1.55360 1.17284 1.16783 0.82346 0.77736 0.84618 1.90771 1.52060 1.60328 1.38762 1.20752 0.92050 1.04083 0.94926 1.22564 1.02446 1.05527 0.85294 1.42694 1.13558 1.35887 1.11215 1.21404 0.95068 0.98670 0.92144 1.19476 0.96891 1.01135 0.93472 1.20678 0.96929 0.99281 0.99178 1.20952 0.92509 0.98805 1.00667 1.20366 1.01189 0.98039 0.88887 1.20976 0.82869 1.02285 0.96493 1.70901 1.28927 1.18197 0.99326 0.93391 0.93046 0.92787 0.92414 0.92637 0.91809 0.91462 0.91068 0.91905 0.94847 0.95781 0.77926 0.93607 0.75106 0.78894 0.82005 0.90672 0.90654 0.91167 0.83964 0.82769 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.64 9.91 37.15 0.37 -1.27 16 2 C -0.13 -1.50 5.93 -26.73 -0.16 -1.65 16 3 C -0.11 -1.62 3.81 -26.73 -0.10 -1.72 16 4 C -0.13 -1.84 4.89 -26.73 -0.13 -1.98 16 5 C 0.14 2.45 2.42 -67.93 -0.16 2.29 16 6 H 0.09 1.74 7.58 -51.93 -0.39 1.35 16 7 C 0.14 2.96 5.82 -4.04 -0.02 2.94 16 8 N -0.73 -19.00 5.43 -59.91 -0.33 -19.33 16 9 C -0.24 -6.87 9.99 -15.06 -0.15 -7.02 16 10 H 0.07 1.93 7.83 -52.49 -0.41 1.52 16 11 C -0.01 -0.37 5.50 -17.43 -0.10 -0.47 16 12 N -0.93 -29.00 13.06 55.49 0.72 -28.27 16 13 Si 0.91 22.90 29.55 -169.99 -5.02 17.88 16 14 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 15 H -0.29 -7.43 7.11 56.52 0.40 -7.03 16 16 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 17 N -0.69 -12.64 4.47 -54.83 -0.24 -12.88 16 18 C 0.60 11.09 6.39 -12.44 -0.08 11.01 16 19 O -0.54 -10.51 14.00 5.29 0.07 -10.43 16 20 C 0.02 0.27 6.94 -83.45 -0.58 -0.31 16 21 C -0.02 -0.33 11.47 -16.22 -0.19 -0.51 16 22 N -0.36 -4.67 2.93 -62.38 -0.18 -4.85 16 23 C 0.05 0.44 10.54 -16.59 -0.17 0.26 16 24 C -0.11 -0.82 5.85 -104.95 -0.61 -1.43 16 25 C -0.10 -0.44 10.00 36.00 0.36 -0.08 16 26 C -0.11 -0.87 9.73 -39.54 -0.38 -1.25 16 27 C -0.06 -0.72 10.11 -39.31 -0.40 -1.12 16 28 C 0.22 3.22 7.79 -156.04 -1.22 2.01 16 29 N -0.45 -7.94 11.01 -9.35 -0.10 -8.04 16 30 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 34 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.06 1.02 5.65 -51.93 -0.29 0.73 16 36 H 0.07 1.05 7.84 -51.93 -0.41 0.64 16 37 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 38 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 39 H 0.03 0.68 8.14 -51.93 -0.42 0.25 16 40 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 41 H 0.39 10.84 7.33 -40.82 -0.30 10.54 16 42 H 0.25 7.68 8.31 -40.82 -0.34 7.34 16 43 H 0.41 7.88 8.30 -40.82 -0.34 7.54 16 44 H 0.19 2.25 8.06 -52.49 -0.42 1.83 16 45 H 0.16 0.96 8.06 -52.49 -0.42 0.53 16 46 H 0.07 0.26 8.14 -51.93 -0.42 -0.17 16 47 H 0.07 0.26 8.09 -51.93 -0.42 -0.16 16 48 H 0.07 0.24 8.07 -51.93 -0.42 -0.18 16 49 H 0.14 0.74 8.06 -52.49 -0.42 0.32 16 50 H 0.15 1.49 8.06 -52.48 -0.42 1.06 16 LS Contribution 411.52 15.07 6.20 6.20 Total: -1.00 -34.83 411.52 -10.64 -45.47 By element: Atomic # 1 Polarization: 22.60 SS G_CDS: -8.04 Total: 14.57 kcal Atomic # 6 Polarization: 3.41 SS G_CDS: -3.73 Total: -0.32 kcal Atomic # 7 Polarization: -73.24 SS G_CDS: -0.13 Total: -73.37 kcal Atomic # 8 Polarization: -10.51 SS G_CDS: 0.07 Total: -10.43 kcal Atomic # 14 Polarization: 22.90 SS G_CDS: -5.02 Total: 17.88 kcal Total LS contribution 6.20 Total: 6.20 kcal Total: -34.83 -10.64 -45.47 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329887034.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.627 kcal (2) G-P(sol) polarization free energy of solvation -34.829 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.645 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.473 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.154 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds