Wall clock time and date at job start Wed Apr 1 2020 04:00:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53007 * 109.47025 * 2 1 4 4 C 1.52994 * 109.47025 * 179.97438 * 3 2 1 5 5 C 1.53003 * 109.47306 * 179.97438 * 4 3 2 6 6 H 1.09002 * 109.46892 * 305.00508 * 5 4 3 7 7 C 1.52996 * 109.47530 * 184.99714 * 5 4 3 8 8 N 1.46498 * 109.47059 * 184.99929 * 7 5 4 9 9 C 1.36943 * 119.99752 * 179.72430 * 8 7 5 10 10 H 1.08002 * 119.99793 * 0.27665 * 9 8 7 11 11 C 1.38811 * 120.00012 * 180.27737 * 9 8 7 12 12 N 1.31624 * 119.99698 * 0.02562 * 11 9 8 13 13 Si 1.86795 * 120.00072 * 180.02562 * 11 9 8 14 14 H 1.48503 * 109.47294 * 90.00155 * 13 11 9 15 15 H 1.48499 * 109.47218 * 210.00015 * 13 11 9 16 16 H 1.48496 * 109.47166 * 329.99846 * 13 11 9 17 17 N 1.46506 * 109.46609 * 64.99913 * 5 4 3 18 18 C 1.34782 * 119.99726 * 274.99704 * 17 5 4 19 19 O 1.21583 * 120.00249 * 0.02562 * 18 17 5 20 20 C 1.47586 * 119.99668 * 179.97438 * 18 17 5 21 21 C 1.36574 * 125.91862 * 179.71642 * 20 18 17 22 22 N 1.36194 * 107.09574 * 179.84469 * 21 20 18 23 23 C 1.36677 * 132.29616 * 180.10910 * 22 21 20 24 24 C 1.34848 * 120.64080 * 180.31933 * 23 22 21 25 25 C 1.50699 * 119.82733 * 180.02562 * 24 23 22 26 26 C 1.40566 * 120.34419 * 0.02562 * 24 23 22 27 27 C 1.35895 * 119.72691 * 0.02562 * 26 24 23 28 28 C 1.37271 * 107.34307 * 0.42315 * 22 21 20 29 29 N 1.32235 * 108.37321 * 359.73092 * 28 22 21 30 30 H 1.09001 * 109.46772 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47619 * 300.00358 * 1 2 3 32 32 H 1.09003 * 109.47243 * 60.00697 * 1 2 3 33 33 H 1.09001 * 109.47619 * 239.99641 * 2 1 3 34 34 H 1.09003 * 109.47243 * 119.99303 * 2 1 3 35 35 H 1.08994 * 109.47070 * 59.99773 * 3 2 1 36 36 H 1.09003 * 109.46541 * 299.99733 * 3 2 1 37 37 H 1.09001 * 109.47619 * 59.99641 * 4 3 2 38 38 H 1.09003 * 109.47243 * 299.99303 * 4 3 2 39 39 H 1.09004 * 109.47066 * 65.00196 * 7 5 4 40 40 H 1.08994 * 109.46974 * 305.00344 * 7 5 4 41 41 H 0.97001 * 120.00384 * 0.02562 * 8 7 5 42 42 H 0.96999 * 119.99739 * 180.02562 * 12 11 9 43 43 H 0.97000 * 120.00390 * 95.00648 * 17 5 4 44 44 H 1.08002 * 126.45017 * 0.02562 * 21 20 18 45 45 H 1.07999 * 119.68010 * 0.35004 * 23 22 21 46 46 H 1.09006 * 109.47538 * 90.00422 * 25 24 23 47 47 H 1.09002 * 109.47086 * 210.00196 * 25 24 23 48 48 H 1.08995 * 109.47391 * 329.99800 * 25 24 23 49 49 H 1.08002 * 120.13646 * 180.02562 * 26 24 23 50 50 H 1.08003 * 120.32383 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5699 1.4426 0.0006 5 6 4.0799 2.8851 0.0000 6 1 3.6456 3.4236 -0.8423 7 6 5.6048 2.8869 -0.1250 8 7 6.1029 4.2594 -0.0058 9 6 7.4473 4.5089 -0.0814 10 1 8.1399 3.6943 -0.2333 11 6 7.9197 5.8087 0.0373 12 7 7.0755 6.8014 0.2229 13 14 9.7535 6.1491 -0.0665 14 1 10.1302 6.4056 -1.4799 15 1 10.0834 7.3397 0.7575 16 1 10.5047 4.9728 0.4404 17 7 3.6918 3.5407 1.2513 18 6 2.4744 4.1078 1.3655 19 8 1.6982 4.0747 0.4303 20 6 2.0831 4.7678 2.6263 21 6 0.8885 5.3825 2.8717 22 7 0.9357 5.8541 4.1485 23 6 0.0309 6.5393 4.9100 24 6 0.3315 6.9033 6.1731 25 6 -0.6802 7.6579 6.9966 26 6 1.5835 6.5826 6.7257 27 6 2.4945 5.9025 5.9811 28 6 2.1666 5.5266 4.6604 29 7 2.8440 4.8733 3.7314 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8899 32 1 -0.3634 0.5137 -0.8901 33 1 1.8934 -0.5139 -0.8899 34 1 1.8933 -0.5137 0.8901 35 1 1.6766 1.9564 0.8899 36 1 1.6766 1.9563 -0.8901 37 1 3.9337 0.9286 -0.8891 38 1 3.9329 0.9290 0.8909 39 1 5.8903 2.4797 -1.0950 40 1 6.0350 2.2741 0.6671 41 1 5.4808 4.9910 0.1309 42 1 7.4056 7.7097 0.3054 43 1 4.3109 3.5669 1.9976 44 1 0.0610 5.4746 2.1838 45 1 -0.9343 6.7912 4.4962 46 1 -1.3050 6.9507 7.5421 47 1 -0.1624 8.3059 7.7038 48 1 -1.3049 8.2630 6.3396 49 1 1.8206 6.8754 7.7379 50 1 3.4592 5.6507 6.3962 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001329887034.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:00:54 Heat of formation + Delta-G solvation = 23.794688 kcal Electronic energy + Delta-G solvation = -29937.510878 eV Core-core repulsion = 25964.726053 eV Total energy + Delta-G solvation = -3972.784824 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -43.90520 -40.94041 -38.73846 -37.79600 -36.26342 -35.16962 -34.75361 -33.29545 -32.81371 -31.68033 -30.03031 -28.80387 -27.78265 -25.93593 -25.05809 -23.96770 -23.76667 -23.10398 -21.85436 -21.72452 -21.14336 -19.38088 -19.06383 -17.92705 -17.60076 -17.34230 -17.12179 -16.71220 -16.27969 -16.01305 -15.80181 -15.53631 -15.35550 -15.16370 -15.07600 -14.74469 -14.47507 -14.27446 -14.13383 -13.82335 -13.53223 -13.27038 -13.18204 -13.15512 -12.87504 -12.79275 -12.54349 -12.46135 -12.43157 -12.12834 -12.02465 -11.94294 -11.87549 -11.84572 -11.46752 -11.41549 -11.35681 -11.07864 -10.94644 -10.01192 -9.72234 -9.01882 -8.93981 -7.93803 -5.24259 -0.35746 0.17420 1.00325 1.43376 1.46142 1.48900 1.57265 2.22635 2.31002 2.55804 2.57067 3.02623 3.38505 3.41491 3.62516 3.68202 3.88041 3.97359 4.01336 4.07614 4.12500 4.22342 4.27615 4.31284 4.35548 4.44720 4.55685 4.60068 4.70327 4.78636 4.83797 4.89706 4.90209 4.94498 4.99551 5.04149 5.07404 5.14462 5.21416 5.23656 5.29398 5.31983 5.34107 5.41679 5.49240 5.54880 5.57365 5.62357 5.94429 6.25702 6.43714 6.70216 7.20020 7.32381 8.06428 8.30257 9.29437 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.006615 B = 0.003668 C = 0.002487 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4232.058720 B = 7631.233261 C =11257.057653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.121 4.121 3 C -0.105 4.105 4 C -0.117 4.117 5 C 0.146 3.854 6 H 0.066 0.934 7 C 0.145 3.855 8 N -0.744 5.744 9 C -0.244 4.244 10 H 0.081 0.919 11 C -0.078 4.078 12 N -0.970 5.970 13 Si 0.978 3.022 14 H -0.287 1.287 15 H -0.297 1.297 16 H -0.266 1.266 17 N -0.692 5.692 18 C 0.598 3.402 19 O -0.560 6.560 20 C -0.023 4.023 21 C -0.020 4.020 22 N -0.362 5.362 23 C 0.030 3.970 24 C -0.098 4.098 25 C -0.101 4.101 26 C -0.077 4.077 27 C -0.102 4.102 28 C 0.206 3.794 29 N -0.501 5.501 30 H 0.067 0.933 31 H 0.043 0.957 32 H 0.050 0.950 33 H 0.070 0.930 34 H 0.061 0.939 35 H 0.043 0.957 36 H 0.050 0.950 37 H 0.090 0.910 38 H 0.072 0.928 39 H 0.044 0.956 40 H 0.035 0.965 41 H 0.372 0.628 42 H 0.249 0.751 43 H 0.407 0.593 44 H 0.214 0.786 45 H 0.195 0.805 46 H 0.091 0.909 47 H 0.089 0.911 48 H 0.082 0.918 49 H 0.181 0.819 50 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.242 -4.816 15.108 25.714 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.158 4.158 3 C -0.142 4.142 4 C -0.156 4.156 5 C 0.041 3.959 6 H 0.084 0.916 7 C 0.019 3.981 8 N -0.387 5.387 9 C -0.375 4.375 10 H 0.099 0.901 11 C -0.270 4.270 12 N -0.621 5.621 13 Si 0.806 3.194 14 H -0.215 1.215 15 H -0.224 1.224 16 H -0.191 1.191 17 N -0.341 5.341 18 C 0.384 3.616 19 O -0.440 6.440 20 C -0.156 4.156 21 C -0.156 4.156 22 N -0.032 5.032 23 C -0.090 4.090 24 C -0.101 4.101 25 C -0.158 4.158 26 C -0.100 4.100 27 C -0.122 4.122 28 C -0.040 4.040 29 N -0.223 5.223 30 H 0.086 0.914 31 H 0.062 0.938 32 H 0.069 0.931 33 H 0.089 0.911 34 H 0.080 0.920 35 H 0.061 0.939 36 H 0.068 0.932 37 H 0.108 0.892 38 H 0.090 0.910 39 H 0.062 0.938 40 H 0.053 0.947 41 H 0.204 0.796 42 H 0.057 0.943 43 H 0.242 0.758 44 H 0.231 0.769 45 H 0.212 0.788 46 H 0.109 0.891 47 H 0.108 0.892 48 H 0.101 0.899 49 H 0.198 0.802 50 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -19.823 -5.261 14.400 25.060 hybrid contribution 0.611 1.109 -0.189 1.280 sum -19.212 -4.153 14.210 24.254 Atomic orbital electron populations 1.21728 0.95657 1.01854 1.01294 1.21540 0.96180 0.95844 1.02263 1.21548 0.94505 0.96811 1.01376 1.21922 0.96228 0.93892 1.03518 1.21251 0.94325 0.94309 0.85974 0.91631 1.21125 0.90867 0.86827 0.99327 1.42551 1.04585 1.03761 1.87802 1.19665 0.84904 0.92812 1.40161 0.90136 1.25635 1.02186 0.95663 1.03511 1.69875 1.34817 0.99049 1.58356 0.85080 0.79906 0.77247 0.77141 1.21452 1.22407 1.19076 1.45779 1.15532 1.55727 1.17023 1.17030 0.82034 0.77351 0.85135 1.90732 1.52447 1.61185 1.39593 1.20670 0.93707 1.06377 0.94798 1.22767 1.01909 1.04769 0.86203 1.42825 1.13717 1.35833 1.10826 1.22186 0.95748 0.98337 0.92682 1.20044 0.97270 0.99689 0.93078 1.20799 0.96328 0.99498 0.99176 1.21503 0.91613 0.95305 1.01617 1.20627 1.02791 1.00605 0.88130 1.21496 0.83424 1.01814 0.97271 1.70773 1.30540 1.20699 1.00283 0.91432 0.93815 0.93114 0.91103 0.91978 0.93861 0.93154 0.89176 0.90971 0.93784 0.94704 0.79620 0.94256 0.75761 0.76945 0.78801 0.89100 0.89202 0.89930 0.80166 0.82254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.13 9.91 71.98 0.71 -2.42 16 2 C -0.12 -2.76 5.93 30.59 0.18 -2.58 16 3 C -0.10 -3.07 3.81 30.59 0.12 -2.95 16 4 C -0.12 -3.40 4.89 30.59 0.15 -3.26 16 5 C 0.15 5.42 2.42 44.99 0.11 5.53 16 6 H 0.07 2.73 7.58 -2.39 -0.02 2.72 16 7 C 0.15 6.04 5.82 86.38 0.50 6.54 16 8 N -0.74 -39.87 5.43 -343.46 -1.87 -41.74 16 9 C -0.24 -14.08 9.99 84.03 0.84 -13.24 16 10 H 0.08 4.39 7.83 -2.91 -0.02 4.37 16 11 C -0.08 -4.66 5.50 84.86 0.47 -4.19 16 12 N -0.97 -62.52 13.06 21.65 0.28 -62.24 16 13 Si 0.98 47.73 29.55 68.60 2.03 49.75 16 14 H -0.29 -13.77 7.11 99.48 0.71 -13.07 16 15 H -0.30 -14.64 7.11 99.48 0.71 -13.93 16 16 H -0.27 -12.15 7.11 99.48 0.71 -11.45 16 17 N -0.69 -27.11 4.47 -445.63 -1.99 -29.10 16 18 C 0.60 23.79 6.39 86.71 0.55 24.34 16 19 O -0.56 -23.23 14.00 -3.98 -0.06 -23.28 16 20 C -0.02 -0.85 6.94 40.80 0.28 -0.57 16 21 C -0.02 -0.60 11.47 83.63 0.96 0.36 16 22 N -0.36 -9.35 2.93 -351.26 -1.03 -10.38 16 23 C 0.03 0.49 10.54 83.16 0.88 1.36 16 24 C -0.10 -1.19 5.85 -20.08 -0.12 -1.30 16 25 C -0.10 -0.40 10.00 71.24 0.71 0.31 16 26 C -0.08 -1.05 9.73 22.29 0.22 -0.83 16 27 C -0.10 -2.24 10.11 22.45 0.23 -2.01 16 28 C 0.21 6.29 7.79 134.20 1.05 7.34 16 29 N -0.50 -18.91 11.01 -183.50 -2.02 -20.93 16 30 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 31 H 0.04 0.98 8.14 -2.39 -0.02 0.96 16 32 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 33 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 34 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 35 H 0.04 1.45 5.65 -2.39 -0.01 1.43 16 36 H 0.05 1.63 7.84 -2.39 -0.02 1.61 16 37 H 0.09 2.29 8.14 -2.39 -0.02 2.27 16 38 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 39 H 0.04 1.76 8.14 -2.38 -0.02 1.74 16 40 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 41 H 0.37 21.92 7.33 -92.71 -0.68 21.24 16 42 H 0.25 15.55 8.31 -92.71 -0.77 14.78 16 43 H 0.41 16.76 8.30 -92.71 -0.77 15.99 16 44 H 0.21 5.11 8.06 -2.91 -0.02 5.09 16 45 H 0.20 1.71 8.06 -2.91 -0.02 1.69 16 46 H 0.09 0.18 8.14 -2.38 -0.02 0.16 16 47 H 0.09 0.18 8.09 -2.39 -0.02 0.16 16 48 H 0.08 0.20 8.07 -2.39 -0.02 0.18 16 49 H 0.18 1.07 8.06 -2.91 -0.02 1.05 16 50 H 0.16 3.16 8.06 -2.91 -0.02 3.13 16 Total: -1.00 -79.74 411.52 2.68 -77.05 By element: Atomic # 1 Polarization: 48.92 SS G_CDS: -0.50 Total: 48.42 kcal Atomic # 6 Polarization: 4.59 SS G_CDS: 7.84 Total: 12.43 kcal Atomic # 7 Polarization: -157.75 SS G_CDS: -6.62 Total: -164.38 kcal Atomic # 8 Polarization: -23.23 SS G_CDS: -0.06 Total: -23.28 kcal Atomic # 14 Polarization: 47.73 SS G_CDS: 2.03 Total: 49.75 kcal Total: -79.74 2.68 -77.05 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329887034.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.847 kcal (2) G-P(sol) polarization free energy of solvation -79.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.685 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.053 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds