Wall clock time and date at job start Wed Apr 1 2020 04:01:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 C 1.52997 * 109.47482 * 179.97438 * 3 2 1 5 5 C 1.53000 * 109.47060 * 180.02562 * 4 3 2 6 6 H 1.09002 * 109.47069 * 304.99600 * 5 4 3 7 7 C 1.53006 * 109.46846 * 185.00166 * 5 4 3 8 8 N 1.46499 * 109.46806 * 184.99862 * 7 5 4 9 9 C 1.36943 * 119.99693 * 179.97438 * 8 7 5 10 10 H 1.07999 * 120.00054 * 0.02562 * 9 8 7 11 11 C 1.38813 * 119.99963 * 179.97438 * 9 8 7 12 12 N 1.31618 * 119.99700 * 359.97438 * 11 9 8 13 13 Si 1.86798 * 120.00203 * 180.02562 * 11 9 8 14 14 H 1.48498 * 109.46819 * 59.99716 * 13 11 9 15 15 H 1.48495 * 109.47211 * 180.02562 * 13 11 9 16 16 H 1.48503 * 109.46651 * 299.99996 * 13 11 9 17 17 N 1.46498 * 109.47465 * 65.00143 * 5 4 3 18 18 C 1.34775 * 119.99767 * 274.99987 * 17 5 4 19 19 O 1.21281 * 120.00210 * 359.97438 * 18 17 5 20 20 C 1.50697 * 120.00163 * 179.97438 * 18 17 5 21 21 C 1.50695 * 109.47318 * 179.97438 * 20 18 17 22 22 N 1.30246 * 126.10756 * 269.68502 * 21 20 18 23 23 N 1.39875 * 110.08463 * 179.90126 * 22 21 20 24 24 H 0.96999 * 125.46211 * 180.14223 * 23 22 21 25 25 C 1.37039 * 109.07882 * 0.37613 * 23 22 21 26 26 C 1.39282 * 133.85336 * 179.78504 * 25 23 22 27 27 C 1.36593 * 119.85377 * 179.97438 * 26 25 23 28 28 C 1.38961 * 120.81521 * 0.02562 * 27 26 25 29 29 C 1.36470 * 120.62809 * 359.97438 * 28 27 26 30 30 C 1.39939 * 119.63332 * 359.97438 * 29 28 27 31 31 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.47153 * 300.00216 * 1 2 3 33 33 H 1.09001 * 109.47289 * 60.00300 * 1 2 3 34 34 H 1.09002 * 109.47153 * 239.99783 * 2 1 3 35 35 H 1.09001 * 109.46832 * 119.99974 * 2 1 3 36 36 H 1.09002 * 109.47103 * 59.99753 * 3 2 1 37 37 H 1.08998 * 109.46862 * 300.00565 * 3 2 1 38 38 H 1.09002 * 109.47153 * 59.99783 * 4 3 2 39 39 H 1.09001 * 109.46832 * 299.99974 * 4 3 2 40 40 H 1.09000 * 109.46628 * 304.99786 * 7 5 4 41 41 H 1.08994 * 109.47033 * 64.99811 * 7 5 4 42 42 H 0.96997 * 120.00432 * 359.97438 * 8 7 5 43 43 H 0.97002 * 120.00009 * 180.02562 * 12 11 9 44 44 H 0.96997 * 120.00030 * 94.99833 * 17 5 4 45 45 H 1.09001 * 109.47000 * 299.99876 * 20 18 17 46 46 H 1.08999 * 109.47301 * 59.99722 * 20 18 17 47 47 H 1.08002 * 120.07115 * 0.02562 * 26 25 23 48 48 H 1.07996 * 119.58962 * 179.97438 * 27 26 25 49 49 H 1.08000 * 119.68887 * 179.97438 * 28 27 26 50 50 H 1.08000 * 120.18046 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4424 0.0006 5 6 4.0800 2.8849 0.0013 6 1 3.6458 3.4242 -0.8406 7 6 5.6049 2.8867 -0.1238 8 7 6.1031 4.2591 -0.0035 9 6 7.4471 4.5092 -0.0840 10 1 8.1397 3.6947 -0.2367 11 6 7.9191 5.8097 0.0295 12 7 7.0748 6.8024 0.2140 13 14 9.7523 6.1509 -0.0811 14 1 10.2613 5.6984 -1.4007 15 1 9.9945 7.6082 0.0703 16 1 10.4584 5.4173 0.9999 17 7 3.6920 3.5396 1.2531 18 6 2.4746 4.1064 1.3679 19 8 1.7006 4.0750 0.4347 20 6 2.0752 4.7794 2.6557 21 6 0.6779 5.3280 2.5235 22 7 0.3574 6.5198 2.1071 23 7 -1.0328 6.6737 2.1151 24 1 -1.5121 7.4729 1.8459 25 6 -1.6090 5.5162 2.5691 26 6 -2.9248 5.1128 2.7833 27 6 -3.1828 3.8577 3.2567 28 6 -2.1465 2.9730 3.5296 29 6 -0.8476 3.3405 3.3294 30 6 -0.5577 4.6207 2.8441 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 -0.3634 0.5138 -0.8900 34 1 1.8933 -0.5139 -0.8900 35 1 1.8933 -0.5138 0.8900 36 1 1.6767 1.9563 0.8900 37 1 1.6766 1.9562 -0.8899 38 1 3.9337 0.9284 -0.8891 39 1 3.9329 0.9287 0.8909 40 1 6.0351 2.2733 0.6678 41 1 5.8903 2.4803 -1.0941 42 1 5.4810 4.9907 0.1333 43 1 7.4046 7.7112 0.2930 44 1 4.3111 3.5650 1.9993 45 1 2.1058 4.0544 3.4691 46 1 2.7665 5.5946 2.8693 47 1 -3.7394 5.7906 2.5748 48 1 -4.2046 3.5495 3.4216 49 1 -2.3712 1.9851 3.9037 50 1 -0.0479 2.6473 3.5443 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001329902749.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:01:06 Heat of formation + Delta-G solvation = 17.496657 kcal Electronic energy + Delta-G solvation = -30346.619147 eV Core-core repulsion = 26373.561220 eV Total energy + Delta-G solvation = -3973.057927 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.28581 -40.88631 -38.15592 -37.81002 -36.22984 -35.05157 -34.36846 -33.02838 -31.89337 -31.10693 -30.65107 -29.30634 -28.47096 -25.82162 -23.95511 -23.72066 -23.15321 -22.84123 -21.75487 -21.42907 -20.64232 -19.19303 -18.81343 -18.05628 -17.82795 -17.35318 -16.74700 -16.33025 -16.06904 -15.90876 -15.77565 -15.38682 -15.24932 -15.14424 -14.82854 -14.64560 -14.42947 -14.15215 -14.11222 -13.89212 -13.44554 -13.13905 -13.06217 -12.83746 -12.80859 -12.77690 -12.74262 -12.46066 -12.16515 -11.97025 -11.95558 -11.83122 -11.79492 -11.69174 -11.36510 -11.30092 -11.23619 -10.95049 -10.68304 -9.85926 -9.62574 -8.98911 -8.92119 -7.92219 -5.21758 0.02290 0.60787 1.36837 1.48883 1.51550 1.57630 1.74066 1.75435 2.41495 2.57764 2.91576 3.39578 3.41948 3.58275 3.66622 3.78590 3.95532 4.09070 4.13194 4.18273 4.29454 4.34496 4.36855 4.40995 4.47752 4.50241 4.52005 4.61018 4.66025 4.69678 4.90376 4.95465 4.97977 5.00331 5.04224 5.10141 5.14655 5.19711 5.27594 5.38530 5.41032 5.47769 5.52492 5.54832 5.63394 5.64318 5.70849 6.00007 6.28019 6.40336 6.61328 6.68136 7.35486 7.37499 8.10196 8.33399 9.30413 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.011251 B = 0.003006 C = 0.002464 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2488.056180 B = 9311.230965 C =11359.997157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.120 4.120 3 C -0.102 4.102 4 C -0.116 4.116 5 C 0.150 3.850 6 H 0.051 0.949 7 C 0.146 3.854 8 N -0.743 5.743 9 C -0.243 4.243 10 H 0.079 0.921 11 C -0.075 4.075 12 N -0.968 5.968 13 Si 0.972 3.028 14 H -0.281 1.281 15 H -0.300 1.300 16 H -0.274 1.274 17 N -0.703 5.703 18 C 0.520 3.480 19 O -0.567 6.567 20 C -0.063 4.063 21 C 0.116 3.884 22 N -0.280 5.280 23 N -0.510 5.510 24 H 0.447 0.553 25 C 0.109 3.891 26 C -0.152 4.152 27 C -0.067 4.067 28 C -0.159 4.159 29 C -0.049 4.049 30 C -0.188 4.188 31 H 0.066 0.934 32 H 0.050 0.950 33 H 0.038 0.962 34 H 0.062 0.938 35 H 0.071 0.929 36 H 0.055 0.945 37 H 0.033 0.967 38 H 0.078 0.922 39 H 0.083 0.917 40 H 0.044 0.956 41 H 0.033 0.967 42 H 0.374 0.626 43 H 0.249 0.751 44 H 0.411 0.589 45 H 0.152 0.848 46 H 0.117 0.883 47 H 0.146 0.854 48 H 0.162 0.838 49 H 0.154 0.846 50 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.040 -12.972 9.805 26.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.157 4.157 3 C -0.140 4.140 4 C -0.155 4.155 5 C 0.045 3.955 6 H 0.069 0.931 7 C 0.019 3.981 8 N -0.386 5.386 9 C -0.375 4.375 10 H 0.097 0.903 11 C -0.267 4.267 12 N -0.619 5.619 13 Si 0.802 3.198 14 H -0.207 1.207 15 H -0.226 1.226 16 H -0.199 1.199 17 N -0.355 5.355 18 C 0.306 3.694 19 O -0.446 6.446 20 C -0.104 4.104 21 C -0.062 4.062 22 N -0.094 5.094 23 N -0.226 5.226 24 H 0.293 0.707 25 C -0.007 4.007 26 C -0.174 4.174 27 C -0.087 4.087 28 C -0.178 4.178 29 C -0.069 4.069 30 C -0.196 4.196 31 H 0.085 0.915 32 H 0.069 0.931 33 H 0.057 0.943 34 H 0.080 0.920 35 H 0.090 0.910 36 H 0.073 0.927 37 H 0.052 0.948 38 H 0.096 0.904 39 H 0.102 0.898 40 H 0.062 0.938 41 H 0.050 0.950 42 H 0.206 0.794 43 H 0.058 0.942 44 H 0.247 0.753 45 H 0.170 0.830 46 H 0.135 0.865 47 H 0.164 0.836 48 H 0.179 0.821 49 H 0.172 0.828 50 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -20.959 -11.896 8.671 25.612 hybrid contribution 0.697 1.153 -0.104 1.351 sum -20.262 -10.743 8.567 24.482 Atomic orbital electron populations 1.21718 0.95874 1.01712 1.01161 1.21533 0.95949 0.95929 1.02316 1.21519 0.94621 0.96596 1.01264 1.21904 0.95972 0.94058 1.03536 1.21064 0.93909 0.94115 0.86459 0.93113 1.21115 0.91029 0.86795 0.99151 1.42537 1.04445 1.03879 1.87779 1.19597 0.85055 0.92643 1.40188 0.90284 1.25553 1.01761 0.95730 1.03643 1.69831 1.34712 0.99008 1.58338 0.85229 0.80392 0.76082 0.78133 1.20747 1.22646 1.19942 1.45824 1.15828 1.56989 1.16840 1.20474 0.81654 0.77772 0.89478 1.90710 1.52421 1.59832 1.41626 1.20152 0.90301 1.02521 0.97476 1.22968 0.95230 0.90741 0.97255 1.76498 0.93078 1.20479 1.19359 1.45850 1.02406 1.14367 1.60011 0.70686 1.19296 0.95710 0.87668 0.98024 1.20191 0.91919 0.99053 1.06251 1.21166 1.01073 0.91760 0.94722 1.21050 0.91626 1.01588 1.03566 1.20624 0.98439 0.92596 0.95272 1.19987 0.91099 0.97633 1.10868 0.91476 0.93056 0.94309 0.91972 0.90982 0.92678 0.94801 0.90361 0.89823 0.93790 0.94961 0.79410 0.94213 0.75306 0.83001 0.86527 0.83594 0.82073 0.82820 0.84279 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.85 9.91 71.98 0.71 -2.14 16 2 C -0.12 -2.41 5.93 30.59 0.18 -2.23 16 3 C -0.10 -2.68 3.82 30.59 0.12 -2.57 16 4 C -0.12 -2.92 4.89 30.59 0.15 -2.77 16 5 C 0.15 4.89 2.41 44.99 0.11 5.00 16 6 H 0.05 2.03 7.58 -2.39 -0.02 2.01 16 7 C 0.15 5.44 5.82 86.38 0.50 5.95 16 8 N -0.74 -36.60 5.43 -343.45 -1.87 -38.47 16 9 C -0.24 -13.22 9.99 84.03 0.84 -12.38 16 10 H 0.08 4.07 7.83 -2.91 -0.02 4.05 16 11 C -0.07 -4.24 5.50 84.86 0.47 -3.77 16 12 N -0.97 -59.43 13.06 21.65 0.28 -59.15 16 13 Si 0.97 45.81 29.55 68.60 2.03 47.83 16 14 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 15 H -0.30 -14.43 7.11 99.48 0.71 -13.72 16 16 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 17 N -0.70 -21.24 4.47 -442.53 -1.98 -23.22 16 18 C 0.52 16.63 6.39 87.66 0.56 17.19 16 19 O -0.57 -22.27 13.17 -3.03 -0.04 -22.31 16 20 C -0.06 -1.64 6.29 29.10 0.18 -1.46 16 21 C 0.12 3.52 5.93 44.79 0.27 3.79 16 22 N -0.28 -9.39 12.55 -43.69 -0.55 -9.94 16 23 N -0.51 -13.81 7.37 -51.54 -0.38 -14.19 16 24 H 0.45 9.23 8.96 -213.47 -1.91 7.32 16 25 C 0.11 2.73 7.34 39.21 0.29 3.02 16 26 C -0.15 -2.73 10.03 22.14 0.22 -2.51 16 27 C -0.07 -0.95 9.96 22.06 0.22 -0.73 16 28 C -0.16 -2.43 9.97 22.03 0.22 -2.21 16 29 C -0.05 -0.99 10.07 22.27 0.22 -0.76 16 30 C -0.19 -5.01 6.33 -20.24 -0.13 -5.14 16 31 H 0.07 1.04 8.14 -2.38 -0.02 1.02 16 32 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 33 H 0.04 0.84 8.14 -2.39 -0.02 0.82 16 34 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 35 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 36 H 0.05 1.56 5.64 -2.39 -0.01 1.55 16 37 H 0.03 1.09 7.85 -2.39 -0.02 1.07 16 38 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 39 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 40 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 41 H 0.03 1.23 8.14 -2.39 -0.02 1.21 16 42 H 0.37 20.15 7.33 -92.71 -0.68 19.47 16 43 H 0.25 14.99 8.31 -92.71 -0.77 14.22 16 44 H 0.41 11.27 8.60 -92.71 -0.80 10.47 16 45 H 0.15 2.59 8.14 -2.39 -0.02 2.57 16 46 H 0.12 3.05 8.14 -2.39 -0.02 3.03 16 47 H 0.15 1.82 8.06 -2.91 -0.02 1.80 16 48 H 0.16 1.13 8.06 -2.91 -0.02 1.11 16 49 H 0.15 1.40 8.06 -2.91 -0.02 1.38 16 50 H 0.14 2.24 8.06 -2.91 -0.02 2.22 16 Total: -1.00 -76.99 411.41 0.21 -76.78 By element: Atomic # 1 Polarization: 48.80 SS G_CDS: -2.42 Total: 46.38 kcal Atomic # 6 Polarization: -8.86 SS G_CDS: 5.13 Total: -3.73 kcal Atomic # 7 Polarization: -140.47 SS G_CDS: -4.49 Total: -144.96 kcal Atomic # 8 Polarization: -22.27 SS G_CDS: -0.04 Total: -22.31 kcal Atomic # 14 Polarization: 45.81 SS G_CDS: 2.03 Total: 47.83 kcal Total: -76.99 0.21 -76.78 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329902749.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.281 kcal (2) G-P(sol) polarization free energy of solvation -76.993 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.288 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.785 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds