Wall clock time and date at job start Wed Apr 1 2020 04:01:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53005 * 109.47133 * 2 1 4 4 C 1.52997 * 109.47133 * 179.97438 * 3 2 1 5 5 C 1.53004 * 109.47180 * 179.97438 * 4 3 2 6 6 H 1.08998 * 109.47079 * 54.99767 * 5 4 3 7 7 C 1.52992 * 109.47321 * 174.99739 * 5 4 3 8 8 N 1.46499 * 109.47267 * 175.00102 * 7 5 4 9 9 C 1.36935 * 119.99938 * 179.97438 * 8 7 5 10 10 H 1.08000 * 120.00518 * 359.72965 * 9 8 7 11 11 C 1.38817 * 119.99990 * 179.97438 * 9 8 7 12 12 N 1.31617 * 119.99869 * 0.02562 * 11 9 8 13 13 Si 1.86800 * 119.99909 * 179.97438 * 11 9 8 14 14 H 1.48501 * 109.47361 * 0.02562 * 13 11 9 15 15 H 1.48508 * 109.46860 * 120.00310 * 13 11 9 16 16 H 1.48500 * 109.47264 * 240.00123 * 13 11 9 17 17 N 1.46498 * 109.46876 * 294.99855 * 5 4 3 18 18 C 1.34776 * 119.99880 * 85.00192 * 17 5 4 19 19 O 1.21281 * 120.00492 * 359.97438 * 18 17 5 20 20 C 1.50706 * 119.99726 * 179.97438 * 18 17 5 21 21 C 1.50709 * 109.46733 * 180.02562 * 20 18 17 22 22 N 1.30240 * 126.10831 * 90.02783 * 21 20 18 23 23 N 1.39879 * 110.08110 * 179.97438 * 22 21 20 24 24 H 0.96994 * 125.45459 * 179.97438 * 23 22 21 25 25 C 1.37034 * 109.08055 * 359.97438 * 23 22 21 26 26 C 1.39283 * 133.85607 * 180.02562 * 25 23 22 27 27 C 1.36589 * 119.85726 * 179.97438 * 26 25 23 28 28 C 1.38972 * 120.81371 * 359.97438 * 27 26 25 29 29 C 1.36463 * 120.62834 * 0.02562 * 28 27 26 30 30 C 1.39954 * 119.63436 * 359.65612 * 29 28 27 31 31 H 1.09004 * 109.47437 * 300.00333 * 1 2 3 32 32 H 1.09002 * 109.46801 * 60.00122 * 1 2 3 33 33 H 1.08995 * 109.47171 * 180.02562 * 1 2 3 34 34 H 1.08995 * 109.47554 * 239.99451 * 2 1 3 35 35 H 1.08999 * 109.47307 * 119.99334 * 2 1 3 36 36 H 1.08995 * 109.47349 * 59.99326 * 3 2 1 37 37 H 1.09006 * 109.46298 * 299.99504 * 3 2 1 38 38 H 1.09004 * 109.47437 * 59.99667 * 4 3 2 39 39 H 1.08999 * 109.47307 * 299.99334 * 4 3 2 40 40 H 1.09004 * 109.47330 * 55.00006 * 7 5 4 41 41 H 1.09005 * 109.47124 * 295.00210 * 7 5 4 42 42 H 0.96999 * 119.99984 * 359.97438 * 8 7 5 43 43 H 0.96996 * 119.99743 * 179.97438 * 12 11 9 44 44 H 0.96994 * 120.00389 * 264.99489 * 17 5 4 45 45 H 1.08994 * 109.46905 * 299.99507 * 20 18 17 46 46 H 1.08995 * 109.47277 * 59.99864 * 20 18 17 47 47 H 1.07999 * 120.07025 * 359.97438 * 26 25 23 48 48 H 1.07995 * 119.59510 * 179.97438 * 27 26 25 49 49 H 1.07995 * 119.68339 * 179.97438 * 28 27 26 50 50 H 1.07993 * 120.18139 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 6 4.0800 2.8851 0.0000 6 1 3.6450 3.4246 0.8413 7 6 5.6047 2.8870 0.1264 8 7 6.1029 4.2594 0.0061 9 6 7.4467 4.5096 0.0887 10 1 8.1389 3.6959 0.2470 11 6 7.9189 5.8100 -0.0258 12 7 7.0750 6.8024 -0.2134 13 14 9.7519 6.1514 0.0876 14 1 10.4810 4.8752 0.2996 15 1 10.2168 6.7830 -1.1735 16 1 10.0153 7.0675 1.2264 17 7 3.6930 3.5392 -1.2524 18 6 2.4757 4.1061 -1.3684 19 8 1.7005 4.0743 -0.4362 20 6 2.0778 4.7795 -2.6565 21 6 0.6802 5.3280 -2.5257 22 7 0.3589 6.5178 -2.1043 23 7 -1.0311 6.6731 -2.1184 24 1 -1.5108 7.4718 -1.8486 25 6 -1.6066 5.5161 -2.5743 26 6 -2.9221 5.1127 -2.7909 27 6 -3.1792 3.8585 -3.2667 28 6 -2.1424 2.9744 -3.5399 29 6 -0.8438 3.3418 -3.3374 30 6 -0.5543 4.6239 -2.8568 31 1 -0.3634 0.5139 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3633 -1.0276 0.0005 34 1 1.8934 -0.5139 -0.8899 35 1 1.8933 -0.5137 0.8900 36 1 1.6766 1.9564 0.8899 37 1 1.6766 1.9562 -0.8901 38 1 3.9337 0.9285 -0.8891 39 1 3.9330 0.9290 0.8909 40 1 6.0357 2.2733 -0.6646 41 1 5.8893 2.4809 1.0971 42 1 5.4810 4.9908 -0.1322 43 1 7.4049 7.7111 -0.2931 44 1 4.3127 3.5645 -1.9981 45 1 2.7693 5.5949 -2.8689 46 1 2.1095 4.0550 -3.4702 47 1 -3.7370 5.7903 -2.5830 48 1 -4.2007 3.5501 -3.4327 49 1 -2.3665 1.9868 -3.9152 50 1 -0.0438 2.6488 -3.5517 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001329902752.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:01:11 Heat of formation + Delta-G solvation = 39.786506 kcal Electronic energy + Delta-G solvation = -30344.514634 eV Core-core repulsion = 26372.423267 eV Total energy + Delta-G solvation = -3972.091367 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.37300 -39.62829 -37.29736 -36.50684 -34.87748 -33.47762 -33.37373 -31.46667 -30.52162 -30.17601 -29.77660 -28.27738 -27.01210 -24.15674 -23.14971 -22.31740 -22.25593 -21.62569 -20.69694 -20.14114 -19.56019 -17.95425 -17.25563 -16.99688 -16.74198 -16.08784 -15.44726 -15.23742 -14.88612 -14.82508 -14.54537 -14.37724 -14.06248 -13.82617 -13.52729 -13.47384 -13.24464 -13.04351 -12.74332 -12.68412 -12.19193 -12.04884 -12.01584 -11.96477 -11.80889 -11.27861 -11.21085 -11.05719 -10.89746 -10.81690 -10.78117 -10.71515 -10.32977 -10.26463 -10.25921 -9.98061 -9.72604 -9.46808 -8.91835 -8.76338 -8.56686 -8.08122 -6.95463 -5.77663 -3.07486 0.84877 1.40132 2.35713 2.62257 2.98000 3.42164 3.47963 3.50335 3.54495 3.75219 4.34413 4.44264 4.56186 4.61969 4.82138 4.89456 5.01544 5.09454 5.13639 5.23137 5.25439 5.32819 5.40318 5.44723 5.50879 5.55841 5.59100 5.59678 5.70445 5.84828 5.87172 5.91924 5.99383 6.01620 6.08165 6.19728 6.20407 6.25954 6.33060 6.35580 6.37627 6.49690 6.51752 6.67940 6.72846 6.74563 7.00266 7.22744 7.57763 7.68804 7.90699 8.40051 8.59753 9.52022 10.08274 10.43616 11.44523 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.011246 B = 0.003006 C = 0.002464 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2489.100118 B = 9311.939373 C =11360.344072 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.125 4.125 3 C -0.111 4.111 4 C -0.126 4.126 5 C 0.140 3.860 6 H 0.086 0.914 7 C 0.145 3.855 8 N -0.731 5.731 9 C -0.242 4.242 10 H 0.071 0.929 11 C -0.012 4.012 12 N -0.929 5.929 13 Si 0.906 3.094 14 H -0.281 1.281 15 H -0.292 1.292 16 H -0.292 1.292 17 N -0.708 5.708 18 C 0.520 3.480 19 O -0.531 6.531 20 C -0.069 4.069 21 C 0.129 3.871 22 N -0.232 5.232 23 N -0.510 5.510 24 H 0.439 0.561 25 C 0.129 3.871 26 C -0.145 4.145 27 C -0.072 4.072 28 C -0.164 4.164 29 C -0.034 4.034 30 C -0.162 4.162 31 H 0.051 0.949 32 H 0.052 0.948 33 H 0.047 0.953 34 H 0.055 0.945 35 H 0.056 0.944 36 H 0.064 0.936 37 H 0.065 0.935 38 H 0.062 0.938 39 H 0.068 0.932 40 H 0.024 0.976 41 H 0.032 0.968 42 H 0.386 0.614 43 H 0.255 0.745 44 H 0.404 0.596 45 H 0.119 0.881 46 H 0.113 0.887 47 H 0.123 0.877 48 H 0.126 0.874 49 H 0.124 0.876 50 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.251 -10.141 -8.406 24.158 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.162 4.162 3 C -0.148 4.148 4 C -0.165 4.165 5 C 0.035 3.965 6 H 0.104 0.896 7 C 0.016 3.984 8 N -0.376 5.376 9 C -0.373 4.373 10 H 0.089 0.911 11 C -0.208 4.208 12 N -0.578 5.578 13 Si 0.737 3.263 14 H -0.206 1.206 15 H -0.219 1.219 16 H -0.219 1.219 17 N -0.360 5.360 18 C 0.305 3.695 19 O -0.408 6.408 20 C -0.110 4.110 21 C -0.050 4.050 22 N -0.046 5.046 23 N -0.224 5.224 24 H 0.283 0.717 25 C 0.013 3.987 26 C -0.167 4.167 27 C -0.093 4.093 28 C -0.183 4.183 29 C -0.055 4.055 30 C -0.170 4.170 31 H 0.070 0.930 32 H 0.071 0.929 33 H 0.066 0.934 34 H 0.074 0.926 35 H 0.074 0.926 36 H 0.083 0.917 37 H 0.083 0.917 38 H 0.080 0.920 39 H 0.087 0.913 40 H 0.042 0.958 41 H 0.050 0.950 42 H 0.221 0.779 43 H 0.065 0.935 44 H 0.239 0.761 45 H 0.137 0.863 46 H 0.131 0.869 47 H 0.141 0.859 48 H 0.144 0.856 49 H 0.142 0.858 50 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -20.176 -9.029 -7.254 23.264 hybrid contribution 0.560 0.365 -0.355 0.757 sum -19.616 -8.664 -7.609 22.754 Atomic orbital electron populations 1.21732 0.96254 1.00716 1.01907 1.21569 0.95605 0.97776 1.01271 1.21657 0.94712 0.95231 1.03244 1.21976 0.96092 0.96338 1.02102 1.21277 0.95921 0.92381 0.86943 0.89605 1.20960 0.89335 0.89345 0.98713 1.42361 1.05413 1.02070 1.87782 1.19250 0.83682 0.92508 1.41872 0.91132 1.24754 0.97635 0.95693 1.02765 1.69677 1.32750 0.98989 1.56342 0.86133 0.85168 0.77752 0.77199 1.20578 1.21880 1.21907 1.45889 1.15765 1.57172 1.17162 1.20043 0.82110 0.78399 0.88971 1.90723 1.51303 1.58527 1.40245 1.20096 0.90970 1.02000 0.97973 1.22669 0.94157 0.90760 0.97366 1.76628 0.91200 1.19075 1.17661 1.45891 1.03207 1.13588 1.59673 0.71682 1.18851 0.94512 0.87962 0.97397 1.19796 0.92540 0.97933 1.06439 1.20678 0.99351 0.92634 0.96632 1.20618 0.92328 1.00338 1.05045 1.20338 0.96932 0.93192 0.95025 1.19717 0.91543 0.96308 1.09459 0.92952 0.92862 0.93408 0.92612 0.92557 0.91714 0.91670 0.91952 0.91288 0.95795 0.95037 0.77947 0.93535 0.76118 0.86322 0.86860 0.85892 0.85577 0.85764 0.85712 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.57 9.91 37.16 0.37 -1.20 16 2 C -0.12 -1.38 5.93 -26.73 -0.16 -1.54 16 3 C -0.11 -1.48 3.82 -26.73 -0.10 -1.59 16 4 C -0.13 -1.67 4.89 -26.73 -0.13 -1.80 16 5 C 0.14 2.26 2.42 -67.93 -0.16 2.10 16 6 H 0.09 1.63 7.58 -51.93 -0.39 1.24 16 7 C 0.14 2.74 5.82 -4.05 -0.02 2.72 16 8 N -0.73 -17.85 5.43 -59.91 -0.33 -18.18 16 9 C -0.24 -6.61 9.99 -15.06 -0.15 -6.76 16 10 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 11 C -0.01 -0.35 5.50 -17.43 -0.10 -0.44 16 12 N -0.93 -27.86 13.06 55.49 0.72 -27.14 16 13 Si 0.91 22.18 29.55 -169.99 -5.02 17.16 16 14 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 15 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 16 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 17 N -0.71 -10.62 4.47 -53.81 -0.24 -10.86 16 18 C 0.52 8.08 6.39 -10.98 -0.07 8.01 16 19 O -0.53 -9.94 13.17 5.56 0.07 -9.87 16 20 C -0.07 -0.87 6.30 -29.03 -0.18 -1.05 16 21 C 0.13 1.89 5.92 -80.19 -0.48 1.41 16 22 N -0.23 -3.67 12.55 34.84 0.44 -3.23 16 23 N -0.51 -6.56 7.37 32.36 0.24 -6.32 16 24 H 0.44 4.21 8.96 -182.77 -1.64 2.57 16 25 C 0.13 1.62 7.34 -84.18 -0.62 1.00 16 26 C -0.14 -1.42 10.03 -39.79 -0.40 -1.81 16 27 C -0.07 -0.62 9.96 -39.91 -0.40 -1.02 16 28 C -0.16 -1.49 9.97 -39.95 -0.40 -1.89 16 29 C -0.03 -0.37 10.07 -39.58 -0.40 -0.77 16 30 C -0.16 -2.15 6.33 -105.20 -0.67 -2.82 16 31 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 33 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.06 1.01 7.85 -51.93 -0.41 0.60 16 37 H 0.06 0.93 5.64 -51.93 -0.29 0.64 16 38 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 39 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 40 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 41 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 42 H 0.39 10.11 7.33 -40.82 -0.30 9.81 16 43 H 0.25 7.42 8.31 -40.82 -0.34 7.08 16 44 H 0.40 5.62 8.60 -40.82 -0.35 5.27 16 45 H 0.12 1.48 8.14 -51.93 -0.42 1.06 16 46 H 0.11 1.02 8.14 -51.93 -0.42 0.60 16 47 H 0.12 0.89 8.06 -52.49 -0.42 0.47 16 48 H 0.13 0.73 8.06 -52.49 -0.42 0.31 16 49 H 0.12 0.83 8.06 -52.49 -0.42 0.41 16 50 H 0.12 1.12 8.06 -52.49 -0.42 0.69 16 LS Contribution 411.40 15.07 6.20 6.20 Total: -1.00 -34.43 411.40 -11.25 -45.68 By element: Atomic # 1 Polarization: 23.28 SS G_CDS: -9.27 Total: 14.01 kcal Atomic # 6 Polarization: -3.39 SS G_CDS: -4.06 Total: -7.46 kcal Atomic # 7 Polarization: -66.56 SS G_CDS: 0.83 Total: -65.73 kcal Atomic # 8 Polarization: -9.94 SS G_CDS: 0.07 Total: -9.87 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -5.02 Total: 17.16 kcal Total LS contribution 6.20 Total: 6.20 kcal Total: -34.43 -11.25 -45.68 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329902752.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.464 kcal (2) G-P(sol) polarization free energy of solvation -34.429 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.249 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.678 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds