Wall clock time and date at job start Wed Apr 1 2020 03:29:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.30287 * 126.34684 * 2 1 4 4 N 1.28526 * 110.05583 * 180.02562 * 3 2 1 5 5 C 1.31220 * 109.85476 * 359.74179 * 4 3 2 6 6 N 1.38583 * 126.47222 * 180.25576 * 5 4 3 7 7 C 1.46901 * 111.00328 * 250.57578 * 6 5 4 8 8 C 1.46901 * 110.99838 * 14.52821 * 6 5 4 9 9 H 1.08995 * 109.47224 * 55.00065 * 8 6 5 10 10 C 1.52997 * 109.47169 * 294.99492 * 8 6 5 11 11 C 1.50701 * 109.46742 * 175.00102 * 8 6 5 12 12 H 1.08006 * 120.00480 * 92.31986 * 11 8 6 13 13 C 1.37878 * 119.99960 * 272.31116 * 11 8 6 14 14 N 1.31511 * 120.00217 * 186.10265 * 13 11 8 15 15 Si 1.86800 * 119.99859 * 6.10891 * 13 11 8 16 16 H 1.48500 * 109.47079 * 94.93667 * 15 13 11 17 17 H 1.48500 * 109.46939 * 214.93375 * 15 13 11 18 18 H 1.48494 * 109.47151 * 334.93452 * 15 13 11 19 19 N 1.36443 * 107.05481 * 0.40537 * 5 4 3 20 20 C 1.46500 * 127.13778 * 179.87074 * 19 5 4 21 21 C 1.53002 * 109.47077 * 84.48992 * 20 19 5 22 22 C 1.52995 * 109.47039 * 62.16569 * 21 20 19 23 23 O 1.42901 * 109.46934 * 302.16633 * 21 20 19 24 24 C 1.50697 * 109.47351 * 182.16601 * 21 20 19 25 25 C 1.38238 * 120.00063 * 329.72647 * 24 21 20 26 26 C 1.38235 * 120.00183 * 179.80481 * 25 24 21 27 27 C 1.38237 * 119.99900 * 0.40581 * 26 25 24 28 28 C 1.38233 * 119.99617 * 359.84534 * 27 26 25 29 29 C 1.38229 * 120.00439 * 359.96414 * 28 27 26 30 30 H 1.09002 * 109.46580 * 269.95924 * 1 2 3 31 31 H 1.08998 * 109.46781 * 29.95186 * 1 2 3 32 32 H 1.08988 * 109.47495 * 149.95812 * 1 2 3 33 33 H 1.09000 * 109.47417 * 58.44687 * 7 6 5 34 34 H 1.08996 * 109.47719 * 178.45628 * 7 6 5 35 35 H 1.09008 * 109.46648 * 298.45903 * 7 6 5 36 36 H 1.08999 * 109.47643 * 186.20062 * 10 8 6 37 37 H 1.08995 * 109.47597 * 306.20729 * 10 8 6 38 38 H 1.09007 * 109.47159 * 66.20477 * 10 8 6 39 39 H 0.97005 * 120.00193 * 179.97438 * 14 13 11 40 40 H 1.08998 * 109.47401 * 324.49254 * 20 19 5 41 41 H 1.09000 * 109.47558 * 204.49202 * 20 19 5 42 42 H 1.09000 * 109.47638 * 60.35381 * 22 21 20 43 43 H 1.09001 * 109.47272 * 180.35356 * 22 21 20 44 44 H 1.09003 * 109.47188 * 300.35127 * 22 21 20 45 45 H 0.96702 * 113.99872 * 299.99952 * 23 21 20 46 46 H 1.08000 * 119.99681 * 0.02562 * 25 24 21 47 47 H 1.08001 * 120.00272 * 180.22515 * 26 25 24 48 48 H 1.07994 * 120.00031 * 179.82868 * 27 26 25 49 49 H 1.08005 * 119.99641 * 179.97438 * 28 27 26 50 50 H 1.07999 * 120.00069 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2792 1.0494 0.0000 4 7 3.5129 0.6888 -0.0005 5 6 3.5945 -0.6208 0.0046 6 7 4.7579 -1.3737 0.0108 7 6 4.9558 -2.0475 -1.2795 8 6 5.9202 -0.5438 0.3550 9 1 5.7395 -0.0420 1.3055 10 6 6.1424 0.5017 -0.7397 11 6 7.1433 -1.4163 0.4720 12 1 7.7805 -1.5710 -0.3862 13 6 7.4491 -2.0171 1.6747 14 7 8.5771 -2.6792 1.8111 15 14 6.2609 -1.8906 3.1106 16 1 5.3866 -3.0907 3.1368 17 1 7.0263 -1.8080 4.3805 18 1 5.4255 -0.6727 2.9560 19 7 2.3174 -1.1013 -0.0006 20 6 1.9009 -2.5059 -0.0004 21 6 1.8820 -3.0320 1.4362 22 6 0.8581 -2.2432 2.2548 23 8 3.1782 -2.8766 2.0174 24 6 1.5052 -4.4911 1.4319 25 6 0.6718 -4.9868 0.4466 26 6 0.3293 -6.3261 0.4404 27 6 0.8134 -7.1679 1.4242 28 6 1.6425 -6.6711 2.4124 29 6 1.9882 -5.3327 2.4164 30 1 -0.3632 -0.0007 1.0277 31 1 -0.3633 0.8904 -0.5131 32 1 -0.3634 -0.8895 -0.5144 33 1 4.9985 -1.3037 -2.0751 34 1 5.8896 -2.6092 -1.2567 35 1 4.1259 -2.7297 -1.4641 36 1 7.0665 1.0447 -0.5414 37 1 6.2133 0.0052 -1.7074 38 1 5.3057 1.2003 -0.7502 39 1 8.7924 -3.1016 2.6574 40 1 2.6024 -3.0930 -0.5931 41 1 0.9030 -2.5890 -0.4309 42 1 -0.1316 -2.3668 1.8151 43 1 0.8491 -2.6138 3.2798 44 1 1.1272 -1.1869 2.2528 45 1 3.8788 -3.3508 1.5490 46 1 0.2912 -4.3285 -0.3203 47 1 -0.3188 -6.7141 -0.3315 48 1 0.5436 -8.2136 1.4209 49 1 2.0204 -7.3287 3.1813 50 1 2.6357 -4.9445 3.1887 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001381613972.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:29:19 Heat of formation + Delta-G solvation = 82.687891 kcal Electronic energy + Delta-G solvation = -32732.900654 eV Core-core repulsion = 28762.669630 eV Total energy + Delta-G solvation = -3970.231023 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.54078 -40.00427 -37.46274 -37.33422 -34.37591 -32.71649 -32.28727 -31.49553 -31.04103 -29.65302 -29.32041 -27.72653 -26.81178 -25.51896 -24.79069 -23.47121 -22.65759 -21.49215 -20.79669 -19.98566 -19.20387 -17.90471 -16.95217 -16.88396 -16.16507 -15.94694 -15.47502 -15.30641 -14.81016 -14.73917 -14.45448 -14.14992 -13.80642 -13.61499 -13.52438 -13.44844 -12.95104 -12.84900 -12.76847 -12.57523 -12.46393 -12.27973 -12.09854 -12.03910 -11.75939 -11.60394 -11.39279 -11.13558 -11.00084 -10.80578 -10.73653 -10.59736 -10.37366 -10.20417 -9.62121 -9.51038 -9.43191 -9.11223 -9.06985 -8.94680 -8.82246 -8.59974 -7.41477 -6.15208 -4.21583 1.10737 1.21534 2.25262 2.65748 3.41086 3.42462 3.46559 3.57332 3.64859 4.17304 4.31714 4.44602 4.49785 4.52945 4.57632 4.68133 4.77698 4.80153 4.97538 5.03286 5.06977 5.27130 5.32219 5.34149 5.40698 5.43752 5.64053 5.65122 5.67328 5.73497 5.80207 5.86488 5.91872 6.03379 6.06410 6.21357 6.24365 6.29779 6.33583 6.39959 6.47880 6.60775 6.69655 6.79220 6.83736 6.98588 7.23410 7.32238 7.58284 7.80464 7.84110 8.14064 8.49894 8.88175 9.36574 9.48688 10.93945 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.009522 B = 0.005618 C = 0.004123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2939.718783 B = 4982.864924 C = 6789.542787 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 C 0.145 3.855 3 N -0.290 5.290 4 N -0.330 5.330 5 C 0.393 3.607 6 N -0.454 5.454 7 C 0.035 3.965 8 C 0.181 3.819 9 H 0.063 0.937 10 C -0.173 4.173 11 C -0.503 4.503 12 H 0.075 0.925 13 C 0.083 3.917 14 N -0.889 5.889 15 Si 0.896 3.104 16 H -0.264 1.264 17 H -0.303 1.303 18 H -0.262 1.262 19 N -0.476 5.476 20 C 0.088 3.912 21 C 0.159 3.841 22 C -0.135 4.135 23 O -0.529 6.529 24 C -0.111 4.111 25 C -0.117 4.117 26 C -0.121 4.121 27 C -0.120 4.120 28 C -0.118 4.118 29 C -0.095 4.095 30 H 0.078 0.922 31 H 0.088 0.912 32 H 0.068 0.932 33 H 0.030 0.970 34 H 0.100 0.900 35 H 0.041 0.959 36 H 0.052 0.948 37 H 0.036 0.964 38 H 0.069 0.931 39 H 0.265 0.735 40 H 0.099 0.901 41 H 0.096 0.904 42 H 0.068 0.932 43 H 0.067 0.933 44 H 0.068 0.932 45 H 0.387 0.613 46 H 0.121 0.879 47 H 0.121 0.879 48 H 0.120 0.880 49 H 0.123 0.877 50 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.096 -7.922 -2.902 21.795 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.123 4.123 3 N -0.130 5.130 4 N -0.174 5.174 5 C 0.038 3.962 6 N -0.179 5.179 7 C -0.112 4.112 8 C 0.079 3.921 9 H 0.081 0.919 10 C -0.233 4.233 11 C -0.542 4.542 12 H 0.093 0.907 13 C -0.122 4.122 14 N -0.525 5.525 15 Si 0.725 3.275 16 H -0.190 1.190 17 H -0.230 1.230 18 H -0.187 1.187 19 N -0.172 5.172 20 C -0.036 4.036 21 C 0.116 3.884 22 C -0.192 4.192 23 O -0.336 6.336 24 C -0.112 4.112 25 C -0.135 4.135 26 C -0.139 4.139 27 C -0.138 4.138 28 C -0.136 4.136 29 C -0.113 4.113 30 H 0.097 0.903 31 H 0.107 0.893 32 H 0.087 0.913 33 H 0.048 0.952 34 H 0.119 0.881 35 H 0.060 0.940 36 H 0.071 0.929 37 H 0.055 0.945 38 H 0.088 0.912 39 H 0.075 0.925 40 H 0.117 0.883 41 H 0.114 0.886 42 H 0.087 0.913 43 H 0.086 0.914 44 H 0.087 0.913 45 H 0.238 0.762 46 H 0.139 0.861 47 H 0.139 0.861 48 H 0.138 0.862 49 H 0.141 0.859 50 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -19.883 -6.567 -2.018 21.037 hybrid contribution -0.484 -1.508 -0.091 1.586 sum -20.367 -8.075 -2.109 22.011 Atomic orbital electron populations 1.20109 0.84817 1.03499 1.03245 1.24435 0.96016 0.82937 1.08888 1.73897 0.97224 1.24324 1.17564 1.74703 1.10474 1.07760 1.24435 1.23442 0.84978 0.89416 0.98365 1.60244 0.99669 1.29517 1.28490 1.22287 1.02801 0.97787 0.88317 1.20018 0.85636 0.90596 0.95864 0.91869 1.22500 1.01889 1.00171 0.98694 1.20882 1.05410 1.29837 0.98071 0.90743 1.25123 0.94562 0.93537 0.98979 1.69947 1.22566 1.34009 1.26023 0.86575 0.80434 0.80398 0.80142 1.18966 1.23011 1.18670 1.46060 1.06396 1.07001 1.57717 1.22614 1.02292 0.79918 0.98788 1.20226 0.86834 0.89853 0.91497 1.21788 0.96284 1.00688 1.00406 1.86742 1.15255 1.75719 1.55924 1.20439 0.98825 0.95694 0.96200 1.21033 0.98412 0.95781 0.98252 1.21098 1.00321 0.93591 0.98859 1.21184 0.97842 0.99708 0.95028 1.21198 0.98111 0.95454 0.98862 1.21090 0.98819 0.93187 0.98217 0.90326 0.89328 0.91326 0.95182 0.88139 0.93992 0.92934 0.94532 0.91241 0.92542 0.88294 0.88561 0.91290 0.91440 0.91265 0.76204 0.86139 0.86056 0.86161 0.85933 0.85147 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.58 9.63 36.01 0.35 -0.23 16 2 C 0.14 2.28 6.81 -154.02 -1.05 1.23 16 3 N -0.29 -5.78 12.18 32.99 0.40 -5.38 16 4 N -0.33 -7.24 9.00 30.31 0.27 -6.97 16 5 C 0.39 7.84 6.10 -318.88 -1.94 5.90 16 6 N -0.45 -9.30 3.72 -176.08 -0.65 -9.95 16 7 C 0.04 0.63 8.68 60.07 0.52 1.16 16 8 C 0.18 4.30 1.47 -68.87 -0.10 4.19 16 9 H 0.06 1.67 5.46 -51.93 -0.28 1.39 16 10 C -0.17 -3.84 8.56 37.16 0.32 -3.52 16 11 C -0.50 -13.32 7.62 -34.44 -0.26 -13.58 16 12 H 0.07 2.12 8.05 -52.48 -0.42 1.70 16 13 C 0.08 2.29 5.47 -17.82 -0.10 2.19 16 14 N -0.89 -25.90 13.96 55.43 0.77 -25.13 16 15 Si 0.90 22.14 26.50 -169.99 -4.50 17.64 16 16 H -0.26 -6.12 6.00 56.52 0.34 -5.78 16 17 H -0.30 -7.69 7.11 56.52 0.40 -7.29 16 18 H -0.26 -6.80 5.86 56.52 0.33 -6.47 16 19 N -0.48 -7.59 2.38 -114.09 -0.27 -7.87 16 20 C 0.09 1.08 4.37 -4.04 -0.02 1.06 16 21 C 0.16 2.04 0.99 -91.77 -0.09 1.95 16 22 C -0.13 -1.62 7.91 37.16 0.29 -1.33 16 23 O -0.53 -9.06 9.38 -35.23 -0.33 -9.39 16 24 C -0.11 -1.26 4.80 -104.62 -0.50 -1.76 16 25 C -0.12 -1.10 9.14 -39.58 -0.36 -1.46 16 26 C -0.12 -1.06 10.05 -39.58 -0.40 -1.45 16 27 C -0.12 -1.09 10.05 -39.58 -0.40 -1.48 16 28 C -0.12 -1.22 10.05 -39.59 -0.40 -1.62 16 29 C -0.10 -1.14 9.35 -39.59 -0.37 -1.51 16 30 H 0.08 0.71 7.55 -51.93 -0.39 0.31 16 31 H 0.09 0.82 8.14 -51.93 -0.42 0.39 16 32 H 0.07 0.51 7.18 -51.94 -0.37 0.14 16 33 H 0.03 0.54 6.46 -51.93 -0.34 0.21 16 34 H 0.10 1.95 6.93 -51.93 -0.36 1.59 16 35 H 0.04 0.63 5.88 -51.92 -0.31 0.32 16 36 H 0.05 1.16 8.14 -51.93 -0.42 0.73 16 37 H 0.04 0.76 6.18 -51.93 -0.32 0.44 16 38 H 0.07 1.56 5.57 -51.93 -0.29 1.27 16 39 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 40 H 0.10 1.22 5.86 -51.93 -0.30 0.92 16 41 H 0.10 0.86 5.61 -51.93 -0.29 0.57 16 42 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 43 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 44 H 0.07 0.99 6.15 -51.93 -0.32 0.67 16 45 H 0.39 6.83 8.00 45.56 0.36 7.20 16 46 H 0.12 0.89 6.23 -52.49 -0.33 0.56 16 47 H 0.12 0.79 8.06 -52.49 -0.42 0.36 16 48 H 0.12 0.83 8.06 -52.49 -0.42 0.41 16 49 H 0.12 1.06 8.06 -52.48 -0.42 0.64 16 50 H 0.13 1.71 7.48 -52.49 -0.39 1.32 16 LS Contribution 380.76 15.07 5.74 5.74 Total: -1.00 -32.73 380.76 -9.66 -42.39 By element: Atomic # 1 Polarization: 15.76 SS G_CDS: -6.58 Total: 9.18 kcal Atomic # 6 Polarization: -5.76 SS G_CDS: -4.51 Total: -10.27 kcal Atomic # 7 Polarization: -55.82 SS G_CDS: 0.52 Total: -55.30 kcal Atomic # 8 Polarization: -9.06 SS G_CDS: -0.33 Total: -9.39 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -4.50 Total: 17.64 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -32.73 -9.66 -42.39 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001381613972.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.078 kcal (2) G-P(sol) polarization free energy of solvation -32.726 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.352 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.664 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.390 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.688 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds