Wall clock time and date at job start Wed Apr 1 2020 03:29:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.30287 * 126.34684 * 2 1 4 4 N 1.28526 * 110.05583 * 180.02562 * 3 2 1 5 5 C 1.31220 * 109.85476 * 359.74179 * 4 3 2 6 6 N 1.38583 * 126.47222 * 180.25576 * 5 4 3 7 7 C 1.46901 * 111.00328 * 250.57578 * 6 5 4 8 8 C 1.46901 * 110.99838 * 14.52821 * 6 5 4 9 9 H 1.08995 * 109.47224 * 55.00065 * 8 6 5 10 10 C 1.52997 * 109.47169 * 294.99492 * 8 6 5 11 11 C 1.50701 * 109.46742 * 175.00102 * 8 6 5 12 12 H 1.08006 * 120.00480 * 92.31986 * 11 8 6 13 13 C 1.37878 * 119.99960 * 272.31116 * 11 8 6 14 14 N 1.31511 * 120.00217 * 186.10265 * 13 11 8 15 15 Si 1.86800 * 119.99859 * 6.10891 * 13 11 8 16 16 H 1.48500 * 109.47079 * 94.93667 * 15 13 11 17 17 H 1.48500 * 109.46939 * 214.93375 * 15 13 11 18 18 H 1.48494 * 109.47151 * 334.93452 * 15 13 11 19 19 N 1.36443 * 107.05481 * 0.40537 * 5 4 3 20 20 C 1.46500 * 127.13778 * 179.87074 * 19 5 4 21 21 C 1.53002 * 109.47077 * 84.48992 * 20 19 5 22 22 C 1.52995 * 109.47039 * 62.16569 * 21 20 19 23 23 O 1.42901 * 109.46934 * 302.16633 * 21 20 19 24 24 C 1.50697 * 109.47351 * 182.16601 * 21 20 19 25 25 C 1.38238 * 120.00063 * 329.72647 * 24 21 20 26 26 C 1.38235 * 120.00183 * 179.80481 * 25 24 21 27 27 C 1.38237 * 119.99900 * 0.40581 * 26 25 24 28 28 C 1.38233 * 119.99617 * 359.84534 * 27 26 25 29 29 C 1.38229 * 120.00439 * 359.96414 * 28 27 26 30 30 H 1.09002 * 109.46580 * 269.95924 * 1 2 3 31 31 H 1.08998 * 109.46781 * 29.95186 * 1 2 3 32 32 H 1.08988 * 109.47495 * 149.95812 * 1 2 3 33 33 H 1.09000 * 109.47417 * 58.44687 * 7 6 5 34 34 H 1.08996 * 109.47719 * 178.45628 * 7 6 5 35 35 H 1.09008 * 109.46648 * 298.45903 * 7 6 5 36 36 H 1.08999 * 109.47643 * 186.20062 * 10 8 6 37 37 H 1.08995 * 109.47597 * 306.20729 * 10 8 6 38 38 H 1.09007 * 109.47159 * 66.20477 * 10 8 6 39 39 H 0.97005 * 120.00193 * 179.97438 * 14 13 11 40 40 H 1.08998 * 109.47401 * 324.49254 * 20 19 5 41 41 H 1.09000 * 109.47558 * 204.49202 * 20 19 5 42 42 H 1.09000 * 109.47638 * 60.35381 * 22 21 20 43 43 H 1.09001 * 109.47272 * 180.35356 * 22 21 20 44 44 H 1.09003 * 109.47188 * 300.35127 * 22 21 20 45 45 H 0.96702 * 113.99872 * 299.99952 * 23 21 20 46 46 H 1.08000 * 119.99681 * 0.02562 * 25 24 21 47 47 H 1.08001 * 120.00272 * 180.22515 * 26 25 24 48 48 H 1.07994 * 120.00031 * 179.82868 * 27 26 25 49 49 H 1.08005 * 119.99641 * 179.97438 * 28 27 26 50 50 H 1.07999 * 120.00069 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2792 1.0494 0.0000 4 7 3.5129 0.6888 -0.0005 5 6 3.5945 -0.6208 0.0046 6 7 4.7579 -1.3737 0.0108 7 6 4.9558 -2.0475 -1.2795 8 6 5.9202 -0.5438 0.3550 9 1 5.7395 -0.0420 1.3055 10 6 6.1424 0.5017 -0.7397 11 6 7.1433 -1.4163 0.4720 12 1 7.7805 -1.5710 -0.3862 13 6 7.4491 -2.0171 1.6747 14 7 8.5771 -2.6792 1.8111 15 14 6.2609 -1.8906 3.1106 16 1 5.3866 -3.0907 3.1368 17 1 7.0263 -1.8080 4.3805 18 1 5.4255 -0.6727 2.9560 19 7 2.3174 -1.1013 -0.0006 20 6 1.9009 -2.5059 -0.0004 21 6 1.8820 -3.0320 1.4362 22 6 0.8581 -2.2432 2.2548 23 8 3.1782 -2.8766 2.0174 24 6 1.5052 -4.4911 1.4319 25 6 0.6718 -4.9868 0.4466 26 6 0.3293 -6.3261 0.4404 27 6 0.8134 -7.1679 1.4242 28 6 1.6425 -6.6711 2.4124 29 6 1.9882 -5.3327 2.4164 30 1 -0.3632 -0.0007 1.0277 31 1 -0.3633 0.8904 -0.5131 32 1 -0.3634 -0.8895 -0.5144 33 1 4.9985 -1.3037 -2.0751 34 1 5.8896 -2.6092 -1.2567 35 1 4.1259 -2.7297 -1.4641 36 1 7.0665 1.0447 -0.5414 37 1 6.2133 0.0052 -1.7074 38 1 5.3057 1.2003 -0.7502 39 1 8.7924 -3.1016 2.6574 40 1 2.6024 -3.0930 -0.5931 41 1 0.9030 -2.5890 -0.4309 42 1 -0.1316 -2.3668 1.8151 43 1 0.8491 -2.6138 3.2798 44 1 1.1272 -1.1869 2.2528 45 1 3.8788 -3.3508 1.5490 46 1 0.2912 -4.3285 -0.3203 47 1 -0.3188 -6.7141 -0.3315 48 1 0.5436 -8.2136 1.4209 49 1 2.0204 -7.3287 3.1813 50 1 2.6357 -4.9445 3.1887 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001381613972.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:29:18 Heat of formation + Delta-G solvation = 62.808598 kcal Electronic energy + Delta-G solvation = -32733.762685 eV Core-core repulsion = 28762.669630 eV Total energy + Delta-G solvation = -3971.093054 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -43.90149 -40.86313 -39.06934 -38.37610 -35.63668 -34.69453 -33.33299 -32.80427 -31.77420 -31.24678 -30.29420 -28.97754 -27.90748 -27.40538 -26.38084 -24.35618 -23.43047 -23.04693 -21.86098 -21.21121 -20.79538 -19.04574 -18.84986 -17.94480 -17.46696 -17.02736 -16.86528 -16.39716 -16.28760 -15.81580 -15.60668 -15.41292 -15.11596 -14.96092 -14.69591 -14.65664 -14.26121 -14.09553 -13.87127 -13.62745 -13.50457 -13.43298 -13.36331 -13.18864 -12.99484 -12.81204 -12.67364 -12.58301 -12.39561 -12.32093 -12.21506 -11.94814 -11.86511 -11.69741 -11.43086 -11.12251 -10.99558 -10.81775 -10.67678 -10.28948 -9.83126 -9.70077 -8.96898 -8.32018 -6.39599 0.37082 0.49013 0.94862 1.37237 1.39275 1.48345 1.60267 1.99188 2.37831 2.81281 2.84041 3.16592 3.34406 3.46763 3.54193 3.58330 3.72169 3.99529 4.10452 4.14284 4.16799 4.23968 4.30473 4.32680 4.43530 4.50302 4.59486 4.61469 4.69643 4.71508 4.76608 4.79467 4.81260 4.89612 4.94990 5.04606 5.07993 5.10021 5.14633 5.16274 5.17946 5.33050 5.39193 5.53469 5.60945 5.62039 5.63321 5.86972 6.05695 6.08960 6.27675 6.58997 6.64798 6.76077 7.33018 7.95815 8.80894 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.009522 B = 0.005618 C = 0.004123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2939.718783 B = 4982.864924 C = 6789.542787 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 C 0.172 3.828 3 N -0.339 5.339 4 N -0.371 5.371 5 C 0.374 3.626 6 N -0.452 5.452 7 C 0.040 3.960 8 C 0.194 3.806 9 H 0.034 0.966 10 C -0.163 4.163 11 C -0.495 4.495 12 H 0.048 0.952 13 C 0.045 3.955 14 N -0.930 5.930 15 Si 0.954 3.046 16 H -0.244 1.244 17 H -0.311 1.311 18 H -0.283 1.283 19 N -0.468 5.468 20 C 0.084 3.916 21 C 0.156 3.844 22 C -0.130 4.130 23 O -0.557 6.557 24 C -0.118 4.118 25 C -0.114 4.114 26 C -0.118 4.118 27 C -0.121 4.121 28 C -0.130 4.130 29 C -0.120 4.120 30 H 0.095 0.905 31 H 0.099 0.901 32 H 0.107 0.893 33 H 0.028 0.972 34 H 0.082 0.918 35 H 0.078 0.922 36 H 0.044 0.956 37 H 0.046 0.954 38 H 0.069 0.931 39 H 0.267 0.733 40 H 0.100 0.900 41 H 0.144 0.856 42 H 0.107 0.893 43 H 0.055 0.945 44 H 0.044 0.956 45 H 0.380 0.620 46 H 0.150 0.850 47 H 0.152 0.848 48 H 0.143 0.857 49 H 0.129 0.871 50 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.680 -9.650 -4.441 26.869 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.097 4.097 3 N -0.178 5.178 4 N -0.214 5.214 5 C 0.017 3.983 6 N -0.177 5.177 7 C -0.107 4.107 8 C 0.090 3.910 9 H 0.052 0.948 10 C -0.223 4.223 11 C -0.534 4.534 12 H 0.066 0.934 13 C -0.156 4.156 14 N -0.569 5.569 15 Si 0.783 3.217 16 H -0.168 1.168 17 H -0.240 1.240 18 H -0.209 1.209 19 N -0.163 5.163 20 C -0.039 4.039 21 C 0.114 3.886 22 C -0.187 4.187 23 O -0.365 6.365 24 C -0.119 4.119 25 C -0.131 4.131 26 C -0.136 4.136 27 C -0.139 4.139 28 C -0.148 4.148 29 C -0.138 4.138 30 H 0.113 0.887 31 H 0.118 0.882 32 H 0.126 0.874 33 H 0.047 0.953 34 H 0.100 0.900 35 H 0.096 0.904 36 H 0.063 0.937 37 H 0.064 0.936 38 H 0.088 0.912 39 H 0.076 0.924 40 H 0.118 0.882 41 H 0.161 0.839 42 H 0.126 0.874 43 H 0.074 0.926 44 H 0.063 0.937 45 H 0.229 0.771 46 H 0.167 0.833 47 H 0.169 0.831 48 H 0.161 0.839 49 H 0.147 0.853 50 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -24.506 -8.315 -3.567 26.122 hybrid contribution 0.774 -0.971 0.328 1.284 sum -23.732 -9.286 -3.239 25.689 Atomic orbital electron populations 1.20474 0.80335 1.06031 1.05059 1.25533 0.98038 0.81711 1.04393 1.73814 0.96993 1.26332 1.20632 1.74546 1.12208 1.09141 1.25513 1.23154 0.85996 0.89197 0.99937 1.59764 0.99128 1.28796 1.29977 1.22306 1.03423 0.97887 0.87081 1.19604 0.85917 0.90368 0.95159 0.94834 1.22385 1.01475 0.99753 0.98643 1.20909 1.06170 1.29344 0.96975 0.93380 1.25614 0.95484 0.93628 1.00863 1.70030 1.24128 1.35987 1.26725 0.85688 0.78551 0.80095 0.77383 1.16795 1.23951 1.20885 1.46148 1.04789 1.08624 1.56690 1.22962 1.04739 0.77551 0.98622 1.20422 0.85124 0.91285 0.91779 1.21811 0.97926 0.98725 1.00267 1.86712 1.16926 1.75920 1.56921 1.20265 1.00049 0.94454 0.97088 1.21308 0.97381 0.96621 0.97831 1.21495 0.99864 0.93241 0.99008 1.21519 0.96892 1.01078 0.94417 1.21361 0.98689 0.94903 0.99827 1.21034 0.99776 0.94368 0.98617 0.88667 0.88233 0.87406 0.95341 0.89958 0.90372 0.93659 0.93551 0.91223 0.92419 0.88162 0.83867 0.87401 0.92551 0.93741 0.77090 0.83284 0.83079 0.83915 0.85277 0.87655 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.91 9.63 71.24 0.69 -0.22 16 2 C 0.17 4.93 6.81 137.64 0.94 5.87 16 3 N -0.34 -13.23 12.18 -49.54 -0.60 -13.83 16 4 N -0.37 -16.37 9.00 -58.01 -0.52 -16.89 16 5 C 0.37 14.73 6.10 260.11 1.59 16.31 16 6 N -0.45 -18.61 3.72 -711.00 -2.64 -21.25 16 7 C 0.04 1.41 8.68 127.69 1.11 2.52 16 8 C 0.19 9.49 1.47 44.17 0.06 9.56 16 9 H 0.03 1.85 5.46 -2.39 -0.01 1.84 16 10 C -0.16 -7.44 8.56 71.98 0.62 -6.82 16 11 C -0.50 -27.22 7.62 25.60 0.19 -27.03 16 12 H 0.05 2.86 8.05 -2.91 -0.02 2.84 16 13 C 0.05 2.57 5.47 84.66 0.46 3.04 16 14 N -0.93 -55.99 13.96 21.45 0.30 -55.69 16 15 Si 0.95 48.06 26.50 68.60 1.82 49.88 16 16 H -0.24 -11.31 6.00 99.48 0.60 -10.72 16 17 H -0.31 -15.98 7.11 99.48 0.71 -15.27 16 18 H -0.28 -15.17 5.86 99.48 0.58 -14.58 16 19 N -0.47 -13.74 2.38 -514.86 -1.23 -14.97 16 20 C 0.08 1.71 4.37 86.38 0.38 2.09 16 21 C 0.16 3.63 0.99 -11.54 -0.01 3.62 16 22 C -0.13 -2.78 7.91 71.98 0.57 -2.21 16 23 O -0.56 -18.95 9.38 -148.98 -1.40 -20.35 16 24 C -0.12 -2.36 4.80 -19.87 -0.10 -2.45 16 25 C -0.11 -1.58 9.14 22.27 0.20 -1.37 16 26 C -0.12 -1.49 10.05 22.27 0.22 -1.26 16 27 C -0.12 -1.78 10.05 22.27 0.22 -1.55 16 28 C -0.13 -2.47 10.05 22.27 0.22 -2.24 16 29 C -0.12 -2.78 9.35 22.27 0.21 -2.57 16 30 H 0.09 1.23 7.55 -2.39 -0.02 1.21 16 31 H 0.10 1.37 8.14 -2.39 -0.02 1.35 16 32 H 0.11 0.82 7.18 -2.39 -0.02 0.80 16 33 H 0.03 1.00 6.46 -2.39 -0.02 0.99 16 34 H 0.08 3.23 6.93 -2.39 -0.02 3.21 16 35 H 0.08 2.17 5.88 -2.38 -0.01 2.16 16 36 H 0.04 2.06 8.14 -2.39 -0.02 2.04 16 37 H 0.05 1.97 6.18 -2.39 -0.01 1.96 16 38 H 0.07 3.21 5.57 -2.38 -0.01 3.19 16 39 H 0.27 15.20 8.31 -92.70 -0.77 14.43 16 40 H 0.10 2.08 5.86 -2.39 -0.01 2.06 16 41 H 0.14 1.57 5.61 -2.39 -0.01 1.56 16 42 H 0.11 1.40 8.14 -2.39 -0.02 1.38 16 43 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 44 H 0.04 1.17 6.15 -2.39 -0.01 1.15 16 45 H 0.38 13.49 8.00 -74.06 -0.59 12.90 16 46 H 0.15 1.14 6.23 -2.91 -0.02 1.13 16 47 H 0.15 1.02 8.06 -2.91 -0.02 1.00 16 48 H 0.14 1.40 8.06 -2.91 -0.02 1.38 16 49 H 0.13 2.13 8.06 -2.91 -0.02 2.11 16 50 H 0.11 2.88 7.48 -2.91 -0.02 2.86 16 Total: -1.00 -77.00 380.76 3.45 -73.55 By element: Atomic # 1 Polarization: 24.14 SS G_CDS: 0.15 Total: 24.29 kcal Atomic # 6 Polarization: -12.31 SS G_CDS: 7.58 Total: -4.73 kcal Atomic # 7 Polarization: -117.94 SS G_CDS: -4.70 Total: -122.63 kcal Atomic # 8 Polarization: -18.95 SS G_CDS: -1.40 Total: -20.35 kcal Atomic # 14 Polarization: 48.06 SS G_CDS: 1.82 Total: 49.88 kcal Total: -77.00 3.45 -73.55 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001381613972.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.356 kcal (2) G-P(sol) polarization free energy of solvation -77.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.355 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.547 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds