Wall clock time and date at job start Wed Apr 1 2020 03:29:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30297 * 126.34691 * 2 1 4 4 N 1.28534 * 110.05344 * 180.30865 * 3 2 1 5 5 C 1.31213 * 109.85828 * 359.72021 * 4 3 2 6 6 N 1.38579 * 126.47204 * 180.02562 * 5 4 3 7 7 C 1.46905 * 111.00370 * 258.07426 * 6 5 4 8 8 C 1.46903 * 111.00040 * 22.03266 * 6 5 4 9 9 H 1.09003 * 109.46654 * 299.99654 * 8 6 5 10 10 C 1.52991 * 109.47229 * 59.99612 * 8 6 5 11 11 C 1.50704 * 109.47097 * 179.97438 * 8 6 5 12 12 H 1.08001 * 119.99839 * 359.97438 * 11 8 6 13 13 C 1.37878 * 119.99769 * 179.97438 * 11 8 6 14 14 N 1.31513 * 120.00025 * 179.97438 * 13 11 8 15 15 Si 1.86801 * 120.00029 * 0.02562 * 13 11 8 16 16 H 1.48503 * 109.46959 * 89.99431 * 15 13 11 17 17 H 1.48494 * 109.47160 * 209.99548 * 15 13 11 18 18 H 1.48502 * 109.47365 * 329.99757 * 15 13 11 19 19 N 1.36450 * 107.05414 * 0.02562 * 5 4 3 20 20 C 1.46510 * 127.13411 * 180.02562 * 19 5 4 21 21 C 1.52995 * 109.47199 * 93.17965 * 20 19 5 22 22 C 1.53009 * 109.46876 * 304.99456 * 21 20 19 23 23 O 1.42904 * 109.47465 * 64.99407 * 21 20 19 24 24 C 1.50695 * 109.47184 * 184.99975 * 21 20 19 25 25 C 1.38230 * 120.00094 * 29.71982 * 24 21 20 26 26 C 1.38244 * 120.00260 * 179.76512 * 25 24 21 27 27 C 1.38230 * 119.99618 * 0.51314 * 26 25 24 28 28 C 1.38242 * 119.99958 * 359.74213 * 27 26 25 29 29 C 1.38230 * 120.00153 * 0.02562 * 28 27 26 30 30 H 1.08996 * 109.47141 * 270.15037 * 1 2 3 31 31 H 1.08999 * 109.47112 * 30.15207 * 1 2 3 32 32 H 1.08999 * 109.46893 * 150.14802 * 1 2 3 33 33 H 1.08997 * 109.46529 * 66.14567 * 7 6 5 34 34 H 1.08999 * 109.47210 * 186.15157 * 7 6 5 35 35 H 1.09001 * 109.46523 * 306.15001 * 7 6 5 36 36 H 1.08999 * 109.47455 * 180.02562 * 10 8 6 37 37 H 1.09005 * 109.47454 * 299.99975 * 10 8 6 38 38 H 1.09003 * 109.47267 * 60.00418 * 10 8 6 39 39 H 0.96997 * 120.00168 * 180.02562 * 14 13 11 40 40 H 1.08995 * 109.47128 * 333.17171 * 20 19 5 41 41 H 1.09008 * 109.46645 * 213.17403 * 20 19 5 42 42 H 1.09004 * 109.47001 * 179.97438 * 22 21 20 43 43 H 1.08995 * 109.46938 * 300.00422 * 22 21 20 44 44 H 1.09006 * 109.46812 * 60.00377 * 22 21 20 45 45 H 0.96695 * 113.99408 * 60.00382 * 23 21 20 46 46 H 1.08005 * 120.00036 * 0.02562 * 25 24 21 47 47 H 1.07995 * 120.00089 * 180.23057 * 26 25 24 48 48 H 1.08000 * 120.00479 * 179.72092 * 27 26 25 49 49 H 1.07997 * 119.99592 * 179.97438 * 28 27 26 50 50 H 1.07999 * 119.99847 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2792 1.0495 0.0000 4 7 3.5130 0.6889 -0.0065 5 6 3.5946 -0.6207 -0.0050 6 7 4.7580 -1.3736 -0.0100 7 6 5.0390 -1.8995 -1.3526 8 6 5.8933 -0.5915 0.4973 9 1 6.0415 0.2850 -0.1335 10 6 5.6044 -0.1446 1.9317 11 6 7.1377 -1.4415 0.4775 12 1 7.0897 -2.4608 0.1238 13 6 8.3372 -0.9178 0.9109 14 7 9.4230 -1.6596 0.8942 15 14 8.4198 0.8451 1.5233 16 1 8.1633 0.8736 2.9858 17 1 9.7679 1.4027 1.2463 18 1 7.3938 1.6604 0.8249 19 7 2.3175 -1.1012 0.0024 20 6 1.9010 -2.5059 0.0072 21 6 1.6867 -2.9694 1.4494 22 6 2.9553 -2.7065 2.2634 23 8 0.5943 -2.2492 2.0239 24 6 1.3783 -4.4444 1.4624 25 6 1.8952 -5.2673 0.4794 26 6 1.6163 -6.6212 0.4941 27 6 0.8117 -7.1504 1.4858 28 6 0.2905 -6.3265 2.4659 29 6 0.5733 -4.9735 2.4539 30 1 -0.3633 0.0027 1.0276 31 1 -0.3633 0.8886 -0.5162 32 1 -0.3633 -0.8913 -0.5115 33 1 5.2639 -1.0731 -2.0267 34 1 5.8939 -2.5742 -1.3069 35 1 4.1677 -2.4415 -1.7201 36 1 6.4466 0.4361 2.3080 37 1 4.7043 0.4701 1.9464 38 1 5.4562 -1.0211 2.5625 39 1 10.2668 -1.2913 1.1994 40 1 2.6746 -3.1158 -0.4594 41 1 0.9701 -2.6107 -0.5503 42 1 2.8025 -3.0363 3.2911 43 1 3.7885 -3.2558 1.8252 44 1 3.1784 -1.6396 2.2540 45 1 -0.2444 -2.3694 1.5580 46 1 2.5205 -4.8532 -0.2978 47 1 2.0232 -7.2647 -0.2719 48 1 0.5901 -8.2073 1.4948 49 1 -0.3385 -6.7399 3.2404 50 1 0.1657 -4.3299 3.2194 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001381613975.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:29:25 Heat of formation + Delta-G solvation = 63.416989 kcal Electronic energy + Delta-G solvation = -32227.750377 eV Core-core repulsion = 28256.683704 eV Total energy + Delta-G solvation = -3971.066672 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -43.99669 -40.88053 -39.02391 -38.41464 -35.69717 -34.84776 -33.49707 -32.71230 -31.91601 -31.75927 -30.23972 -29.00624 -28.07514 -27.03573 -26.12858 -24.33655 -23.71878 -23.32033 -21.99856 -21.12708 -20.93737 -19.11059 -18.76439 -18.01517 -17.52872 -17.19013 -16.80441 -16.66963 -16.20072 -15.92145 -15.57255 -15.47675 -15.22807 -14.94903 -14.83228 -14.47315 -14.24352 -14.19691 -13.85505 -13.80514 -13.45183 -13.41432 -13.36202 -13.17628 -13.08258 -12.81128 -12.77075 -12.69917 -12.47685 -12.40665 -12.24772 -12.13414 -11.87280 -11.58506 -11.52355 -11.47824 -11.21590 -10.78227 -10.69533 -10.28288 -9.80444 -9.68817 -9.19379 -8.33593 -6.35850 0.38249 0.51732 0.85618 1.25427 1.32512 1.33234 1.43775 1.91308 2.27522 2.83740 2.84968 3.02664 3.13722 3.43098 3.48735 3.62797 3.68112 3.98063 4.06584 4.12206 4.16908 4.22529 4.34436 4.39268 4.44942 4.48103 4.54167 4.58385 4.63665 4.66672 4.68742 4.76718 4.78952 4.84813 4.92198 5.00949 5.03493 5.05890 5.07891 5.13252 5.18098 5.23811 5.29247 5.46392 5.57921 5.63084 5.65260 5.75413 5.85753 6.10800 6.18735 6.56628 6.68223 6.75336 7.28451 7.86955 8.80941 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.011423 B = 0.004125 C = 0.003401 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2450.672034 B = 6786.750559 C = 8230.380357 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 C 0.189 3.811 3 N -0.342 5.342 4 N -0.369 5.369 5 C 0.364 3.636 6 N -0.445 5.445 7 C 0.043 3.957 8 C 0.211 3.789 9 H -0.003 1.003 10 C -0.134 4.134 11 C -0.505 4.505 12 H 0.067 0.933 13 C 0.035 3.965 14 N -0.932 5.932 15 Si 0.925 3.075 16 H -0.269 1.269 17 H -0.291 1.291 18 H -0.266 1.266 19 N -0.462 5.462 20 C 0.082 3.918 21 C 0.182 3.818 22 C -0.126 4.126 23 O -0.552 6.552 24 C -0.118 4.118 25 C -0.122 4.122 26 C -0.125 4.125 27 C -0.121 4.121 28 C -0.126 4.126 29 C -0.107 4.107 30 H 0.101 0.899 31 H 0.096 0.904 32 H 0.106 0.894 33 H 0.020 0.980 34 H 0.087 0.913 35 H 0.084 0.916 36 H 0.036 0.964 37 H 0.039 0.961 38 H 0.055 0.945 39 H 0.268 0.732 40 H 0.110 0.890 41 H 0.134 0.866 42 H 0.057 0.943 43 H 0.071 0.929 44 H 0.037 0.963 45 H 0.391 0.609 46 H 0.129 0.871 47 H 0.139 0.861 48 H 0.142 0.858 49 H 0.141 0.859 50 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.579 -11.115 -1.629 27.937 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.079 4.079 3 N -0.181 5.181 4 N -0.212 5.212 5 C 0.006 3.994 6 N -0.169 5.169 7 C -0.103 4.103 8 C 0.104 3.896 9 H 0.015 0.985 10 C -0.192 4.192 11 C -0.543 4.543 12 H 0.085 0.915 13 C -0.164 4.164 14 N -0.572 5.572 15 Si 0.754 3.246 16 H -0.196 1.196 17 H -0.219 1.219 18 H -0.191 1.191 19 N -0.156 5.156 20 C -0.040 4.040 21 C 0.140 3.860 22 C -0.183 4.183 23 O -0.360 6.360 24 C -0.119 4.119 25 C -0.140 4.140 26 C -0.143 4.143 27 C -0.139 4.139 28 C -0.144 4.144 29 C -0.125 4.125 30 H 0.119 0.881 31 H 0.115 0.885 32 H 0.125 0.875 33 H 0.038 0.962 34 H 0.106 0.894 35 H 0.103 0.897 36 H 0.054 0.946 37 H 0.058 0.942 38 H 0.074 0.926 39 H 0.077 0.923 40 H 0.128 0.872 41 H 0.152 0.848 42 H 0.076 0.924 43 H 0.090 0.910 44 H 0.056 0.944 45 H 0.241 0.759 46 H 0.147 0.853 47 H 0.157 0.843 48 H 0.160 0.840 49 H 0.159 0.841 50 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -24.560 -9.890 -0.880 26.491 hybrid contribution 0.507 0.104 -0.292 0.595 sum -24.053 -9.786 -1.173 25.994 Atomic orbital electron populations 1.20433 0.80117 1.05726 1.05315 1.25619 0.98163 0.81487 1.02669 1.73861 0.96612 1.26314 1.21294 1.74592 1.12962 1.09600 1.24059 1.22715 0.86170 0.88782 1.01724 1.58865 0.99599 1.33977 1.24487 1.22373 1.02891 0.99492 0.85592 1.19347 0.86918 0.91347 0.92003 0.98502 1.22022 0.98894 0.99810 0.98450 1.21021 0.90823 0.99702 1.42745 0.91537 1.25378 0.95385 1.00174 0.95480 1.69942 1.00309 1.38024 1.48878 0.86211 0.76530 0.82462 0.79414 1.19582 1.21876 1.19109 1.46136 1.04472 1.08870 1.56110 1.22981 1.04558 0.77437 0.99019 1.19952 0.87885 0.87382 0.90787 1.21648 0.95381 1.01365 0.99942 1.86658 1.20090 1.71362 1.57849 1.20170 1.00020 0.94509 0.97168 1.21288 0.99666 0.94394 0.98653 1.21426 0.98356 0.95013 0.99518 1.21529 0.96965 1.00956 0.94471 1.21438 1.00290 0.93325 0.99306 1.21090 0.97709 0.95866 0.97795 0.88102 0.88506 0.87512 0.96164 0.89437 0.89716 0.94596 0.94210 0.92551 0.92262 0.87205 0.84820 0.92436 0.91027 0.94352 0.75913 0.85334 0.84318 0.84042 0.84149 0.85178 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.84 9.45 71.24 0.67 -0.17 16 2 C 0.19 5.37 7.82 137.64 1.08 6.45 16 3 N -0.34 -13.35 12.18 -49.54 -0.60 -13.96 16 4 N -0.37 -16.42 10.10 -58.01 -0.59 -17.00 16 5 C 0.36 14.00 4.38 260.12 1.14 15.13 16 6 N -0.44 -18.07 4.43 -711.00 -3.15 -21.23 16 7 C 0.04 1.56 9.05 127.69 1.16 2.71 16 8 C 0.21 10.41 1.32 44.17 0.06 10.47 16 9 H 0.00 -0.15 6.96 -2.39 -0.02 -0.16 16 10 C -0.13 -6.49 8.36 71.98 0.60 -5.89 16 11 C -0.50 -27.80 8.53 25.60 0.22 -27.59 16 12 H 0.07 3.85 6.64 -2.91 -0.02 3.83 16 13 C 0.04 2.03 5.45 84.66 0.46 2.49 16 14 N -0.93 -56.43 13.96 21.45 0.30 -56.13 16 15 Si 0.93 46.92 24.37 68.60 1.67 48.59 16 16 H -0.27 -13.22 6.87 99.48 0.68 -12.53 16 17 H -0.29 -14.45 7.11 99.48 0.71 -13.74 16 18 H -0.27 -13.65 6.53 99.48 0.65 -13.00 16 19 N -0.46 -13.10 2.29 -514.84 -1.18 -14.28 16 20 C 0.08 1.58 4.63 86.38 0.40 1.98 16 21 C 0.18 3.67 1.01 -11.54 -0.01 3.66 16 22 C -0.13 -3.73 8.09 71.99 0.58 -3.15 16 23 O -0.55 -9.77 10.79 -148.98 -1.61 -11.38 16 24 C -0.12 -2.06 4.81 -19.87 -0.10 -2.16 16 25 C -0.12 -2.03 9.14 22.27 0.20 -1.83 16 26 C -0.13 -1.83 10.05 22.27 0.22 -1.61 16 27 C -0.12 -1.61 10.05 22.27 0.22 -1.39 16 28 C -0.13 -1.74 10.05 22.27 0.22 -1.51 16 29 C -0.11 -1.72 9.35 22.27 0.21 -1.51 16 30 H 0.10 1.30 7.88 -2.39 -0.02 1.28 16 31 H 0.10 1.34 8.14 -2.39 -0.02 1.32 16 32 H 0.11 0.76 7.33 -2.39 -0.02 0.75 16 33 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 34 H 0.09 3.35 6.32 -2.39 -0.02 3.33 16 35 H 0.08 2.30 6.88 -2.39 -0.02 2.28 16 36 H 0.04 1.78 3.27 -2.39 -0.01 1.77 16 37 H 0.04 1.90 6.29 -2.38 -0.01 1.89 16 38 H 0.06 2.64 8.07 -2.39 -0.02 2.62 16 39 H 0.27 15.35 8.31 -92.71 -0.77 14.58 16 40 H 0.11 2.16 4.89 -2.39 -0.01 2.15 16 41 H 0.13 1.46 7.34 -2.38 -0.02 1.45 16 42 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 43 H 0.07 2.31 8.14 -2.39 -0.02 2.29 16 44 H 0.04 1.38 6.28 -2.38 -0.01 1.37 16 45 H 0.39 3.29 8.85 -74.06 -0.66 2.63 16 46 H 0.13 1.98 6.05 -2.91 -0.02 1.97 16 47 H 0.14 1.54 8.06 -2.91 -0.02 1.51 16 48 H 0.14 1.24 8.06 -2.91 -0.02 1.21 16 49 H 0.14 1.34 8.06 -2.91 -0.02 1.32 16 50 H 0.13 2.00 7.48 -2.91 -0.02 1.98 16 Total: -1.00 -77.21 385.73 2.42 -74.79 By element: Atomic # 1 Polarization: 14.26 SS G_CDS: 0.24 Total: 14.50 kcal Atomic # 6 Polarization: -11.25 SS G_CDS: 7.34 Total: -3.91 kcal Atomic # 7 Polarization: -117.38 SS G_CDS: -5.22 Total: -122.60 kcal Atomic # 8 Polarization: -9.77 SS G_CDS: -1.61 Total: -11.38 kcal Atomic # 14 Polarization: 46.92 SS G_CDS: 1.67 Total: 48.59 kcal Total: -77.21 2.42 -74.79 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001381613975.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.209 kcal (2) G-P(sol) polarization free energy of solvation -77.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.423 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.792 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds