Wall clock time and date at job start Wed Apr 1 2020 03:26:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30291 * 126.34940 * 2 1 4 4 N 1.28528 * 110.05825 * 179.69252 * 3 2 1 5 5 C 1.31215 * 109.85867 * 0.45519 * 4 3 2 6 6 N 1.38576 * 126.47461 * 179.82090 * 5 4 3 7 7 C 1.46894 * 111.00124 * 283.60209 * 6 5 4 8 8 C 1.46896 * 110.99965 * 47.55823 * 6 5 4 9 9 H 1.09003 * 109.47191 * 299.99992 * 8 6 5 10 10 C 1.53002 * 109.47405 * 59.99575 * 8 6 5 11 11 C 1.50699 * 109.47135 * 180.02562 * 8 6 5 12 12 H 1.08000 * 120.00181 * 359.97438 * 11 8 6 13 13 C 1.37881 * 120.00107 * 179.97438 * 11 8 6 14 14 N 1.31513 * 120.00266 * 180.02562 * 13 11 8 15 15 Si 1.86808 * 119.99780 * 0.02562 * 13 11 8 16 16 H 1.48497 * 109.47322 * 89.99952 * 15 13 11 17 17 H 1.48501 * 109.46840 * 209.99999 * 15 13 11 18 18 H 1.48496 * 109.47098 * 329.99480 * 15 13 11 19 19 N 1.36456 * 107.05503 * 359.55731 * 5 4 3 20 20 C 1.46495 * 127.14148 * 180.27897 * 19 5 4 21 21 C 1.50707 * 109.46833 * 87.79425 * 20 19 5 22 22 C 1.38230 * 120.00186 * 269.72837 * 21 20 19 23 23 C 1.38233 * 119.99987 * 179.76630 * 22 21 20 24 24 C 1.38233 * 119.99792 * 0.50512 * 23 22 21 25 25 C 1.50710 * 120.00000 * 179.72572 * 24 23 22 26 26 H 1.08995 * 109.47154 * 205.02490 * 25 24 23 27 27 C 1.53001 * 109.47230 * 85.02121 * 25 24 23 28 28 O 1.42904 * 109.46791 * 325.02273 * 25 24 23 29 29 C 1.38226 * 120.00313 * 359.74694 * 24 23 22 30 30 C 1.38233 * 119.99730 * 89.99979 * 21 20 19 31 31 H 1.09000 * 109.46674 * 270.03554 * 1 2 3 32 32 H 1.08997 * 109.46895 * 30.03963 * 1 2 3 33 33 H 1.08999 * 109.47060 * 150.03843 * 1 2 3 34 34 H 1.09000 * 109.47401 * 189.86171 * 7 6 5 35 35 H 1.08998 * 109.47226 * 309.86530 * 7 6 5 36 36 H 1.08998 * 109.47352 * 69.86354 * 7 6 5 37 37 H 1.08990 * 109.47382 * 300.00389 * 10 8 6 38 38 H 1.09004 * 109.46494 * 60.00597 * 10 8 6 39 39 H 1.09000 * 109.47369 * 179.97438 * 10 8 6 40 40 H 0.97001 * 120.00207 * 180.02562 * 14 13 11 41 41 H 1.09001 * 109.47696 * 207.79315 * 20 19 5 42 42 H 1.08998 * 109.46954 * 327.80250 * 20 19 5 43 43 H 1.08005 * 120.00172 * 359.97438 * 22 21 20 44 44 H 1.07998 * 119.99950 * 180.23417 * 23 22 21 45 45 H 1.08997 * 109.47280 * 180.02562 * 27 25 24 46 46 H 1.09002 * 109.46899 * 300.00726 * 27 25 24 47 47 H 1.09004 * 109.46811 * 59.99910 * 27 25 24 48 48 H 0.96698 * 113.99505 * 179.97438 * 28 25 24 49 49 H 1.08001 * 120.00537 * 179.97438 * 29 24 23 50 50 H 1.08004 * 120.00411 * 0.02562 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2793 1.0494 0.0000 4 7 3.5129 0.6889 0.0065 5 6 3.5946 -0.6207 0.0012 6 7 4.7580 -1.3736 0.0020 7 6 5.3798 -1.3831 -1.3288 8 6 5.6993 -0.8869 1.0193 9 1 5.9553 0.1518 0.8102 10 6 5.0512 -0.9839 2.4019 11 6 6.9497 -1.7275 0.9900 12 1 7.0363 -2.5422 0.2862 13 6 7.9832 -1.4566 1.8615 14 7 9.0746 -2.1899 1.8356 15 14 7.8331 -0.0480 3.0793 16 1 7.2297 -0.5467 4.3412 17 1 9.1807 0.5085 3.3610 18 1 6.9695 1.0141 2.5036 19 7 2.3175 -1.1014 0.0008 20 6 1.9010 -2.5059 0.0014 21 6 1.8099 -3.0022 1.4215 22 6 2.9133 -3.5750 2.0256 23 6 2.8311 -4.0258 3.3298 24 6 1.6423 -3.9132 4.0263 25 6 1.5508 -4.4103 5.4461 26 1 0.5149 -4.6566 5.6788 27 6 2.0429 -3.3205 6.4007 28 8 2.3629 -5.5767 5.5956 29 6 0.5374 -3.3452 3.4204 30 6 0.6211 -2.8896 2.1179 31 1 -0.3633 0.0006 1.0277 32 1 -0.3633 0.8896 -0.5144 33 1 -0.3633 -0.8903 -0.5132 34 1 6.1868 -2.1156 -1.3476 35 1 4.6324 -1.6467 -2.0772 36 1 5.7816 -0.3942 -1.5493 37 1 4.1470 -0.3756 2.4228 38 1 4.7953 -2.0226 2.6110 39 1 5.7498 -0.6232 3.1568 40 1 9.8015 -1.9996 2.4490 41 1 0.9264 -2.5962 -0.4783 42 1 2.6318 -3.1018 -0.5454 43 1 3.8408 -3.6673 1.4799 44 1 3.6943 -4.4699 3.8031 45 1 1.9771 -3.6802 7.4275 46 1 3.0788 -3.0742 6.1679 47 1 1.4235 -2.4308 6.2866 48 1 2.3523 -5.9516 6.4869 49 1 -0.3915 -3.2576 3.9644 50 1 -0.2424 -2.4464 1.6443 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001390906651.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:26:38 Heat of formation + Delta-G solvation = 73.273630 kcal Electronic energy + Delta-G solvation = -31837.573567 eV Core-core repulsion = 27866.934310 eV Total energy + Delta-G solvation = -3970.639256 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.60396 -39.68852 -37.37313 -37.25509 -35.04046 -32.90728 -32.31284 -31.49910 -30.92322 -30.20557 -29.75054 -27.43517 -26.52285 -25.32194 -24.46433 -23.29103 -22.79719 -21.78873 -20.96816 -20.21734 -19.42172 -17.38808 -17.21325 -16.72245 -16.47692 -16.00121 -15.33544 -15.24026 -15.10723 -14.75778 -14.49889 -14.14224 -13.98854 -13.73982 -13.37459 -13.28285 -13.03173 -12.88581 -12.76461 -12.64163 -12.57344 -12.33185 -12.21001 -12.12530 -11.87629 -11.77577 -11.29001 -11.08351 -10.98470 -10.89818 -10.70935 -10.69307 -10.33654 -10.22950 -10.09189 -9.82290 -9.56154 -9.24169 -8.82030 -8.69583 -8.62105 -8.53760 -7.84251 -6.13213 -4.13466 1.13862 1.46837 2.11326 2.67413 3.25607 3.26499 3.38605 3.44265 3.73495 4.03381 4.37510 4.43131 4.54868 4.55895 4.58459 4.73531 4.85029 4.94358 4.99848 5.02788 5.09263 5.19869 5.30630 5.40561 5.46628 5.50675 5.57352 5.58295 5.66382 5.74692 5.90388 5.95267 5.99966 6.07221 6.13681 6.22409 6.29232 6.37061 6.38798 6.40880 6.52880 6.61398 6.65604 6.66673 6.84334 6.99011 7.03052 7.17000 7.44810 7.45844 7.68123 7.97317 8.52095 8.89026 9.17790 9.47972 10.98514 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.007722 B = 0.005485 C = 0.003732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3625.123412 B = 5103.417154 C = 7501.153700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 C 0.158 3.842 3 N -0.293 5.293 4 N -0.320 5.320 5 C 0.378 3.622 6 N -0.459 5.459 7 C 0.050 3.950 8 C 0.198 3.802 9 H 0.021 0.979 10 C -0.143 4.143 11 C -0.511 4.511 12 H 0.086 0.914 13 C 0.079 3.921 14 N -0.894 5.894 15 Si 0.877 3.123 16 H -0.279 1.279 17 H -0.295 1.295 18 H -0.263 1.263 19 N -0.466 5.466 20 C 0.158 3.842 21 C -0.114 4.114 22 C -0.077 4.077 23 C -0.092 4.092 24 C -0.078 4.078 25 C 0.144 3.856 26 H 0.061 0.939 27 C -0.183 4.183 28 O -0.560 6.560 29 C -0.122 4.122 30 C -0.103 4.103 31 H 0.080 0.920 32 H 0.090 0.910 33 H 0.072 0.928 34 H 0.095 0.905 35 H 0.044 0.956 36 H 0.036 0.964 37 H 0.022 0.978 38 H 0.061 0.939 39 H 0.045 0.955 40 H 0.266 0.734 41 H 0.095 0.905 42 H 0.108 0.892 43 H 0.142 0.858 44 H 0.130 0.870 45 H 0.060 0.940 46 H 0.069 0.931 47 H 0.067 0.933 48 H 0.378 0.622 49 H 0.120 0.880 50 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.815 -5.495 2.843 21.715 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.109 4.109 3 N -0.134 5.134 4 N -0.163 5.163 5 C 0.022 3.978 6 N -0.186 5.186 7 C -0.098 4.098 8 C 0.092 3.908 9 H 0.039 0.961 10 C -0.200 4.200 11 C -0.549 4.549 12 H 0.104 0.896 13 C -0.124 4.124 14 N -0.531 5.531 15 Si 0.707 3.293 16 H -0.206 1.206 17 H -0.222 1.222 18 H -0.188 1.188 19 N -0.160 5.160 20 C 0.035 3.965 21 C -0.115 4.115 22 C -0.095 4.095 23 C -0.110 4.110 24 C -0.078 4.078 25 C 0.085 3.915 26 H 0.079 0.921 27 C -0.240 4.240 28 O -0.366 6.366 29 C -0.140 4.140 30 C -0.122 4.122 31 H 0.098 0.902 32 H 0.109 0.891 33 H 0.091 0.909 34 H 0.113 0.887 35 H 0.063 0.937 36 H 0.055 0.945 37 H 0.042 0.958 38 H 0.080 0.920 39 H 0.064 0.936 40 H 0.076 0.924 41 H 0.114 0.886 42 H 0.126 0.874 43 H 0.160 0.840 44 H 0.148 0.852 45 H 0.079 0.921 46 H 0.088 0.912 47 H 0.086 0.914 48 H 0.225 0.775 49 H 0.138 0.862 50 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -20.188 -4.440 2.383 20.807 hybrid contribution -0.235 0.039 1.382 1.403 sum -20.423 -4.400 3.765 21.228 Atomic orbital electron populations 1.20116 0.84427 1.03812 1.03428 1.24624 0.96298 0.82927 1.07078 1.73951 0.96889 1.24281 1.18265 1.74689 1.11395 1.08906 1.21350 1.22828 0.86123 0.88417 1.00413 1.59011 1.02408 1.49070 1.08085 1.22255 0.98831 1.02338 0.86358 1.19788 0.89386 0.95774 0.85846 0.96124 1.22183 0.98177 1.01049 0.98631 1.20844 0.96880 1.16363 1.20863 0.89589 1.24795 0.95012 0.95772 0.96793 1.69851 1.06105 1.39205 1.37952 0.87007 0.76502 0.83759 0.82055 1.20572 1.22224 1.18832 1.46426 1.06431 1.07547 1.55636 1.20610 1.02331 0.78811 0.94738 1.19874 0.94599 1.01208 0.95793 1.21395 0.98287 0.94829 0.95007 1.21058 0.97584 0.98174 0.94147 1.19633 0.94324 0.99277 0.94577 1.20520 0.93561 0.85313 0.92079 0.92070 1.22509 1.03347 0.99413 0.98774 1.86584 1.70751 1.43554 1.35695 1.20757 0.97711 1.00490 0.95026 1.20881 0.97110 0.99734 0.94469 0.90163 0.89123 0.90914 0.88689 0.93673 0.94532 0.95845 0.92027 0.93643 0.92449 0.88635 0.87403 0.84019 0.85161 0.92069 0.91184 0.91443 0.77454 0.86219 0.86208 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.56 10.25 36.01 0.37 -0.19 16 2 C 0.16 2.45 8.07 -154.01 -1.24 1.21 16 3 N -0.29 -5.79 12.18 32.99 0.40 -5.39 16 4 N -0.32 -7.09 11.82 30.31 0.36 -6.73 16 5 C 0.38 7.49 5.14 -318.88 -1.64 5.85 16 6 N -0.46 -9.45 4.66 -176.09 -0.82 -10.27 16 7 C 0.05 0.94 9.10 60.06 0.55 1.49 16 8 C 0.20 4.78 1.49 -68.87 -0.10 4.68 16 9 H 0.02 0.56 7.00 -51.93 -0.36 0.20 16 10 C -0.14 -3.34 8.55 37.16 0.32 -3.02 16 11 C -0.51 -13.72 8.57 -34.44 -0.30 -14.02 16 12 H 0.09 2.42 6.66 -52.49 -0.35 2.08 16 13 C 0.08 2.23 5.45 -17.82 -0.10 2.13 16 14 N -0.89 -26.47 13.96 55.43 0.77 -25.70 16 15 Si 0.88 22.29 24.37 -169.99 -4.14 18.14 16 16 H -0.28 -6.92 6.87 56.52 0.39 -6.53 16 17 H -0.29 -7.46 7.11 56.52 0.40 -7.06 16 18 H -0.26 -6.76 6.53 56.52 0.37 -6.39 16 19 N -0.47 -7.40 2.79 -115.37 -0.32 -7.72 16 20 C 0.16 1.93 6.17 -5.19 -0.03 1.89 16 21 C -0.11 -1.49 5.46 -104.62 -0.57 -2.06 16 22 C -0.08 -1.16 8.17 -39.59 -0.32 -1.49 16 23 C -0.09 -1.36 9.35 -39.59 -0.37 -1.73 16 24 C -0.08 -0.98 5.01 -104.62 -0.52 -1.51 16 25 C 0.14 1.48 3.79 -27.88 -0.11 1.37 16 26 H 0.06 0.51 8.05 -51.93 -0.42 0.09 16 27 C -0.18 -1.78 9.52 37.16 0.35 -1.43 16 28 O -0.56 -6.03 12.47 -35.23 -0.44 -6.46 16 29 C -0.12 -1.35 9.68 -39.59 -0.38 -1.73 16 30 C -0.10 -1.15 9.70 -39.58 -0.38 -1.54 16 31 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.09 0.79 8.14 -51.93 -0.42 0.36 16 33 H 0.07 0.50 7.23 -51.93 -0.38 0.13 16 34 H 0.09 1.85 6.46 -51.93 -0.34 1.51 16 35 H 0.04 0.73 8.06 -51.93 -0.42 0.31 16 36 H 0.04 0.73 8.12 -51.93 -0.42 0.31 16 37 H 0.02 0.53 7.21 -51.93 -0.37 0.16 16 38 H 0.06 1.37 6.19 -51.93 -0.32 1.05 16 39 H 0.05 1.11 3.27 -51.93 -0.17 0.94 16 40 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 41 H 0.10 0.83 7.13 -51.93 -0.37 0.46 16 42 H 0.11 1.32 8.08 -51.93 -0.42 0.90 16 43 H 0.14 2.40 7.78 -52.48 -0.41 1.99 16 44 H 0.13 2.04 7.63 -52.49 -0.40 1.64 16 45 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 46 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 47 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 48 H 0.38 2.30 9.08 45.56 0.41 2.71 16 49 H 0.12 1.01 8.06 -52.49 -0.42 0.59 16 50 H 0.12 1.01 8.06 -52.48 -0.42 0.59 16 LS Contribution 399.31 15.07 6.02 6.02 Total: -1.00 -34.61 399.31 -9.53 -44.14 By element: Atomic # 1 Polarization: 10.94 SS G_CDS: -6.87 Total: 4.07 kcal Atomic # 6 Polarization: -5.61 SS G_CDS: -4.48 Total: -10.09 kcal Atomic # 7 Polarization: -56.20 SS G_CDS: 0.39 Total: -55.81 kcal Atomic # 8 Polarization: -6.03 SS G_CDS: -0.44 Total: -6.46 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -4.14 Total: 18.14 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -34.61 -9.53 -44.14 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001390906651.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.409 kcal (2) G-P(sol) polarization free energy of solvation -34.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.804 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.530 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.135 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.274 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds