Wall clock time and date at job start Wed Apr 1 2020 03:26:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30291 * 126.34940 * 2 1 4 4 N 1.28528 * 110.05825 * 179.69252 * 3 2 1 5 5 C 1.31215 * 109.85867 * 0.45519 * 4 3 2 6 6 N 1.38576 * 126.47461 * 179.82090 * 5 4 3 7 7 C 1.46894 * 111.00124 * 283.60209 * 6 5 4 8 8 C 1.46896 * 110.99965 * 47.55823 * 6 5 4 9 9 H 1.09003 * 109.47191 * 299.99992 * 8 6 5 10 10 C 1.53002 * 109.47405 * 59.99575 * 8 6 5 11 11 C 1.50699 * 109.47135 * 180.02562 * 8 6 5 12 12 H 1.08000 * 120.00181 * 359.97438 * 11 8 6 13 13 C 1.37881 * 120.00107 * 179.97438 * 11 8 6 14 14 N 1.31513 * 120.00266 * 180.02562 * 13 11 8 15 15 Si 1.86808 * 119.99780 * 0.02562 * 13 11 8 16 16 H 1.48497 * 109.47322 * 89.99952 * 15 13 11 17 17 H 1.48501 * 109.46840 * 209.99999 * 15 13 11 18 18 H 1.48496 * 109.47098 * 329.99480 * 15 13 11 19 19 N 1.36456 * 107.05503 * 359.55731 * 5 4 3 20 20 C 1.46495 * 127.14148 * 180.27897 * 19 5 4 21 21 C 1.50707 * 109.46833 * 87.79425 * 20 19 5 22 22 C 1.38230 * 120.00186 * 269.72837 * 21 20 19 23 23 C 1.38233 * 119.99987 * 179.76630 * 22 21 20 24 24 C 1.38233 * 119.99792 * 0.50512 * 23 22 21 25 25 C 1.50710 * 120.00000 * 179.72572 * 24 23 22 26 26 H 1.08995 * 109.47154 * 205.02490 * 25 24 23 27 27 C 1.53001 * 109.47230 * 85.02121 * 25 24 23 28 28 O 1.42904 * 109.46791 * 325.02273 * 25 24 23 29 29 C 1.38226 * 120.00313 * 359.74694 * 24 23 22 30 30 C 1.38233 * 119.99730 * 89.99979 * 21 20 19 31 31 H 1.09000 * 109.46674 * 270.03554 * 1 2 3 32 32 H 1.08997 * 109.46895 * 30.03963 * 1 2 3 33 33 H 1.08999 * 109.47060 * 150.03843 * 1 2 3 34 34 H 1.09000 * 109.47401 * 189.86171 * 7 6 5 35 35 H 1.08998 * 109.47226 * 309.86530 * 7 6 5 36 36 H 1.08998 * 109.47352 * 69.86354 * 7 6 5 37 37 H 1.08990 * 109.47382 * 300.00389 * 10 8 6 38 38 H 1.09004 * 109.46494 * 60.00597 * 10 8 6 39 39 H 1.09000 * 109.47369 * 179.97438 * 10 8 6 40 40 H 0.97001 * 120.00207 * 180.02562 * 14 13 11 41 41 H 1.09001 * 109.47696 * 207.79315 * 20 19 5 42 42 H 1.08998 * 109.46954 * 327.80250 * 20 19 5 43 43 H 1.08005 * 120.00172 * 359.97438 * 22 21 20 44 44 H 1.07998 * 119.99950 * 180.23417 * 23 22 21 45 45 H 1.08997 * 109.47280 * 180.02562 * 27 25 24 46 46 H 1.09002 * 109.46899 * 300.00726 * 27 25 24 47 47 H 1.09004 * 109.46811 * 59.99910 * 27 25 24 48 48 H 0.96698 * 113.99505 * 179.97438 * 28 25 24 49 49 H 1.08001 * 120.00537 * 179.97438 * 29 24 23 50 50 H 1.08004 * 120.00411 * 0.02562 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2793 1.0494 0.0000 4 7 3.5129 0.6889 0.0065 5 6 3.5946 -0.6207 0.0012 6 7 4.7580 -1.3736 0.0020 7 6 5.3798 -1.3831 -1.3288 8 6 5.6993 -0.8869 1.0193 9 1 5.9553 0.1518 0.8102 10 6 5.0512 -0.9839 2.4019 11 6 6.9497 -1.7275 0.9900 12 1 7.0363 -2.5422 0.2862 13 6 7.9832 -1.4566 1.8615 14 7 9.0746 -2.1899 1.8356 15 14 7.8331 -0.0480 3.0793 16 1 7.2297 -0.5467 4.3412 17 1 9.1807 0.5085 3.3610 18 1 6.9695 1.0141 2.5036 19 7 2.3175 -1.1014 0.0008 20 6 1.9010 -2.5059 0.0014 21 6 1.8099 -3.0022 1.4215 22 6 2.9133 -3.5750 2.0256 23 6 2.8311 -4.0258 3.3298 24 6 1.6423 -3.9132 4.0263 25 6 1.5508 -4.4103 5.4461 26 1 0.5149 -4.6566 5.6788 27 6 2.0429 -3.3205 6.4007 28 8 2.3629 -5.5767 5.5956 29 6 0.5374 -3.3452 3.4204 30 6 0.6211 -2.8896 2.1179 31 1 -0.3633 0.0006 1.0277 32 1 -0.3633 0.8896 -0.5144 33 1 -0.3633 -0.8903 -0.5132 34 1 6.1868 -2.1156 -1.3476 35 1 4.6324 -1.6467 -2.0772 36 1 5.7816 -0.3942 -1.5493 37 1 4.1470 -0.3756 2.4228 38 1 4.7953 -2.0226 2.6110 39 1 5.7498 -0.6232 3.1568 40 1 9.8015 -1.9996 2.4490 41 1 0.9264 -2.5962 -0.4783 42 1 2.6318 -3.1018 -0.5454 43 1 3.8408 -3.6673 1.4799 44 1 3.6943 -4.4699 3.8031 45 1 1.9771 -3.6802 7.4275 46 1 3.0788 -3.0742 6.1679 47 1 1.4235 -2.4308 6.2866 48 1 2.3523 -5.9516 6.4869 49 1 -0.3915 -3.2576 3.9644 50 1 -0.2424 -2.4464 1.6443 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001390906651.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:26:37 Heat of formation + Delta-G solvation = 49.867427 kcal Electronic energy + Delta-G solvation = -31838.588536 eV Core-core repulsion = 27866.934310 eV Total energy + Delta-G solvation = -3971.654225 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -43.95891 -40.61255 -38.99634 -38.20101 -36.17319 -34.92944 -33.28036 -32.84017 -32.08620 -31.74797 -30.70461 -28.73922 -27.50797 -27.17474 -26.19299 -24.24429 -23.81719 -23.40628 -22.02282 -21.35095 -20.98343 -19.01442 -18.18280 -18.05740 -17.88829 -17.24539 -16.79680 -16.72561 -16.11898 -16.05553 -15.67043 -15.37769 -15.24302 -15.00118 -14.85768 -14.47828 -14.29120 -14.18699 -13.94228 -13.87599 -13.57974 -13.48257 -13.41649 -13.21481 -13.05758 -12.91831 -12.80596 -12.73929 -12.51923 -12.51331 -12.18793 -11.92858 -11.81384 -11.60445 -11.56999 -11.28030 -11.10072 -11.02545 -10.81921 -10.01840 -9.80260 -9.64360 -9.49841 -8.36217 -6.38331 0.15732 0.50538 0.81557 1.19033 1.27756 1.36653 1.45194 1.85562 2.22943 2.71000 2.94953 3.03064 3.31371 3.55801 3.64319 3.67445 3.91451 4.00648 4.05252 4.09815 4.18128 4.20006 4.28750 4.37689 4.41223 4.41656 4.49449 4.55136 4.57300 4.65271 4.68367 4.76354 4.79626 4.83734 4.86319 4.99600 5.02161 5.03878 5.05208 5.09297 5.17954 5.21275 5.22039 5.43194 5.43885 5.64715 5.66110 5.73426 5.84903 6.05329 6.17299 6.57478 6.66144 6.90145 7.25404 7.79378 8.78702 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.007722 B = 0.005485 C = 0.003732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3625.123412 B = 5103.417154 C = 7501.153700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 C 0.185 3.815 3 N -0.339 5.339 4 N -0.364 5.364 5 C 0.359 3.641 6 N -0.453 5.453 7 C 0.053 3.947 8 C 0.209 3.791 9 H -0.008 1.008 10 C -0.126 4.126 11 C -0.503 4.503 12 H 0.065 0.935 13 C 0.035 3.965 14 N -0.931 5.931 15 Si 0.924 3.076 16 H -0.268 1.268 17 H -0.289 1.289 18 H -0.270 1.270 19 N -0.459 5.459 20 C 0.153 3.847 21 C -0.122 4.122 22 C -0.099 4.099 23 C -0.119 4.119 24 C -0.085 4.085 25 C 0.143 3.857 26 H 0.093 0.907 27 C -0.180 4.180 28 O -0.584 6.584 29 C -0.118 4.118 30 C -0.094 4.094 31 H 0.102 0.898 32 H 0.101 0.899 33 H 0.111 0.889 34 H 0.083 0.917 35 H 0.077 0.923 36 H 0.019 0.981 37 H 0.023 0.977 38 H 0.065 0.935 39 H 0.034 0.966 40 H 0.268 0.732 41 H 0.146 0.854 42 H 0.100 0.900 43 H 0.108 0.892 44 H 0.103 0.897 45 H 0.085 0.915 46 H 0.036 0.964 47 H 0.072 0.928 48 H 0.397 0.603 49 H 0.158 0.842 50 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.900 -5.555 3.473 26.716 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.083 4.083 3 N -0.179 5.179 4 N -0.207 5.207 5 C 0.001 3.999 6 N -0.179 5.179 7 C -0.094 4.094 8 C 0.102 3.898 9 H 0.010 0.990 10 C -0.184 4.184 11 C -0.541 4.541 12 H 0.083 0.917 13 C -0.165 4.165 14 N -0.571 5.571 15 Si 0.753 3.247 16 H -0.194 1.194 17 H -0.216 1.216 18 H -0.195 1.195 19 N -0.152 5.152 20 C 0.032 3.968 21 C -0.123 4.123 22 C -0.117 4.117 23 C -0.137 4.137 24 C -0.086 4.086 25 C 0.085 3.915 26 H 0.111 0.889 27 C -0.237 4.237 28 O -0.393 6.393 29 C -0.136 4.136 30 C -0.112 4.112 31 H 0.120 0.880 32 H 0.120 0.880 33 H 0.130 0.870 34 H 0.101 0.899 35 H 0.095 0.905 36 H 0.038 0.962 37 H 0.042 0.958 38 H 0.084 0.916 39 H 0.053 0.947 40 H 0.078 0.922 41 H 0.164 0.836 42 H 0.118 0.882 43 H 0.127 0.873 44 H 0.122 0.878 45 H 0.104 0.896 46 H 0.056 0.944 47 H 0.091 0.909 48 H 0.247 0.753 49 H 0.175 0.825 50 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -25.295 -4.517 3.021 25.872 hybrid contribution 1.218 -0.015 1.144 1.671 sum -24.077 -4.533 4.165 24.851 Atomic orbital electron populations 1.20523 0.79600 1.06342 1.05525 1.25812 0.98409 0.81530 1.02567 1.73868 0.96526 1.26321 1.21227 1.74561 1.13319 1.10329 1.22522 1.22602 0.86907 0.88173 1.02243 1.58867 1.02353 1.48897 1.07734 1.22229 0.99468 1.00974 0.86708 1.19421 0.89385 0.93401 0.87580 0.99031 1.21973 0.97595 1.01213 0.97585 1.20993 0.97974 1.15527 1.19628 0.91737 1.25391 0.94918 0.97696 0.98463 1.69944 1.06958 1.40918 1.39236 0.86223 0.76518 0.81268 0.80678 1.19430 1.21595 1.19480 1.46596 1.04840 1.09133 1.54618 1.20971 1.04601 0.76515 0.94725 1.19960 0.94718 1.01264 0.96317 1.21211 0.98237 0.96989 0.95300 1.20959 0.98234 0.99938 0.94599 1.20013 0.93848 0.98962 0.95744 1.20651 0.95011 0.85145 0.90707 0.88908 1.22486 1.01322 0.99731 1.00161 1.86552 1.71274 1.43921 1.37543 1.21220 0.98312 0.98793 0.95229 1.21344 0.97252 0.98241 0.94341 0.87997 0.88046 0.87017 0.89862 0.90468 0.96206 0.95810 0.91569 0.94747 0.92223 0.83592 0.88160 0.87349 0.87836 0.89636 0.94430 0.90888 0.75320 0.82477 0.82032 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.81 10.25 71.24 0.73 -0.08 16 2 C 0.19 5.14 8.07 137.64 1.11 6.25 16 3 N -0.34 -13.05 12.18 -49.53 -0.60 -13.65 16 4 N -0.36 -16.26 11.82 -58.01 -0.69 -16.95 16 5 C 0.36 14.19 5.14 260.11 1.34 15.53 16 6 N -0.45 -19.26 4.66 -711.03 -3.31 -22.57 16 7 C 0.05 2.11 9.10 127.69 1.16 3.27 16 8 C 0.21 10.53 1.49 44.17 0.07 10.60 16 9 H -0.01 -0.44 7.00 -2.39 -0.02 -0.46 16 10 C -0.13 -6.07 8.55 71.98 0.62 -5.45 16 11 C -0.50 -28.33 8.57 25.60 0.22 -28.11 16 12 H 0.06 3.86 6.66 -2.91 -0.02 3.84 16 13 C 0.03 2.03 5.45 84.66 0.46 2.49 16 14 N -0.93 -57.13 13.96 21.45 0.30 -56.83 16 15 Si 0.92 47.30 24.37 68.60 1.67 48.98 16 16 H -0.27 -13.15 6.87 99.48 0.68 -12.47 16 17 H -0.29 -14.41 7.11 99.48 0.71 -13.70 16 18 H -0.27 -13.99 6.53 99.48 0.65 -13.34 16 19 N -0.46 -13.51 2.79 -518.91 -1.45 -14.96 16 20 C 0.15 3.25 6.17 85.64 0.53 3.78 16 21 C -0.12 -2.89 5.46 -19.87 -0.11 -3.00 16 22 C -0.10 -3.06 8.17 22.27 0.18 -2.88 16 23 C -0.12 -3.65 9.35 22.27 0.21 -3.44 16 24 C -0.09 -2.01 5.01 -19.87 -0.10 -2.11 16 25 C 0.14 2.63 3.79 29.85 0.11 2.74 16 26 H 0.09 1.14 8.05 -2.39 -0.02 1.12 16 27 C -0.18 -3.20 9.52 71.98 0.69 -2.52 16 28 O -0.58 -12.11 12.47 -148.98 -1.86 -13.97 16 29 C -0.12 -2.10 9.68 22.27 0.22 -1.88 16 30 C -0.09 -1.63 9.70 22.27 0.22 -1.41 16 31 H 0.10 1.04 8.14 -2.39 -0.02 1.02 16 32 H 0.10 1.22 8.14 -2.39 -0.02 1.20 16 33 H 0.11 0.67 7.23 -2.39 -0.02 0.65 16 34 H 0.08 3.43 6.46 -2.39 -0.02 3.41 16 35 H 0.08 2.50 8.06 -2.39 -0.02 2.48 16 36 H 0.02 0.82 8.12 -2.39 -0.02 0.80 16 37 H 0.02 1.10 7.21 -2.39 -0.02 1.09 16 38 H 0.07 3.08 6.19 -2.38 -0.01 3.07 16 39 H 0.03 1.70 3.27 -2.39 -0.01 1.70 16 40 H 0.27 15.54 8.31 -92.71 -0.77 14.77 16 41 H 0.15 1.63 7.13 -2.39 -0.02 1.61 16 42 H 0.10 2.32 8.08 -2.39 -0.02 2.30 16 43 H 0.11 3.98 7.78 -2.91 -0.02 3.96 16 44 H 0.10 3.58 7.63 -2.91 -0.02 3.55 16 45 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 46 H 0.04 0.90 8.14 -2.39 -0.02 0.88 16 47 H 0.07 1.20 8.14 -2.38 -0.02 1.18 16 48 H 0.40 4.31 9.08 -74.06 -0.67 3.64 16 49 H 0.16 1.64 8.06 -2.91 -0.02 1.61 16 50 H 0.16 1.46 8.06 -2.91 -0.02 1.44 16 Total: -1.00 -81.67 399.31 1.91 -79.76 By element: Atomic # 1 Polarization: 16.20 SS G_CDS: 0.20 Total: 16.40 kcal Atomic # 6 Polarization: -13.86 SS G_CDS: 7.64 Total: -6.22 kcal Atomic # 7 Polarization: -119.20 SS G_CDS: -5.75 Total: -124.95 kcal Atomic # 8 Polarization: -12.11 SS G_CDS: -1.86 Total: -13.97 kcal Atomic # 14 Polarization: 47.30 SS G_CDS: 1.67 Total: 48.98 kcal Total: -81.67 1.91 -79.76 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001390906651.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.626 kcal (2) G-P(sol) polarization free energy of solvation -81.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.955 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.912 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.759 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.867 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds