Wall clock time and date at job start Wed Apr 1 2020 03:43:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17409 * 1 3 3 C 1.47195 * 179.97438 * 2 1 4 4 N 1.46500 * 109.46783 * 158.30509 * 3 2 1 5 5 C 1.34778 * 120.00322 * 266.24681 * 4 3 2 6 6 O 1.21602 * 120.00674 * 184.57482 * 5 4 3 7 7 C 1.47428 * 119.99640 * 4.57592 * 5 4 3 8 8 C 1.38047 * 126.41735 * 53.71350 * 7 5 4 9 9 N 1.34261 * 107.41851 * 179.86897 * 8 7 5 10 10 C 1.46494 * 125.75347 * 180.10789 * 9 8 7 11 11 N 1.39937 * 108.49170 * 0.39949 * 9 8 7 12 12 C 1.30446 * 108.89705 * 359.74899 * 11 9 8 13 13 C 1.50697 * 125.99074 * 180.02562 * 12 11 9 14 14 C 1.53004 * 109.47205 * 269.99773 * 13 12 11 15 15 C 1.46504 * 120.00268 * 86.24501 * 4 3 2 16 16 C 1.53042 * 109.46000 * 300.00313 * 15 4 3 17 17 C 1.53188 * 109.31353 * 181.38115 * 16 15 4 18 18 N 1.46927 * 108.89462 * 305.29376 * 17 16 15 19 19 C 1.36926 * 120.63163 * 233.67533 * 18 17 16 20 20 H 1.07996 * 120.00365 * 35.41943 * 19 18 17 21 21 C 1.38820 * 120.00223 * 215.42784 * 19 18 17 22 22 N 1.31622 * 119.99610 * 13.35475 * 21 19 18 23 23 Si 1.86797 * 119.99961 * 193.35837 * 21 19 18 24 24 H 1.48496 * 109.47284 * 59.99674 * 23 21 19 25 25 H 1.48508 * 109.46781 * 179.97438 * 23 21 19 26 26 H 1.48498 * 109.46899 * 299.99316 * 23 21 19 27 27 C 1.47211 * 118.55378 * 53.53748 * 18 17 16 28 28 C 1.53043 * 109.45645 * 60.06608 * 15 4 3 29 29 H 4.40638 * 5.51299 * 180.02562 * 4 1 2 30 30 H 1.08998 * 109.47139 * 38.31024 * 3 2 1 31 31 H 1.08997 * 109.47575 * 278.30113 * 3 2 1 32 32 H 1.08003 * 126.29109 * 0.02793 * 8 7 5 33 33 H 1.09003 * 109.47613 * 270.30990 * 10 9 8 34 34 H 1.08994 * 109.47486 * 30.31505 * 10 9 8 35 35 H 1.09004 * 109.47061 * 150.31356 * 10 9 8 36 36 H 1.09004 * 109.47273 * 29.99693 * 13 12 11 37 37 H 1.08998 * 109.47282 * 149.99475 * 13 12 11 38 38 H 1.08995 * 109.46742 * 299.99557 * 14 13 12 39 39 H 1.09004 * 109.46820 * 59.99707 * 14 13 12 40 40 H 1.08997 * 109.47181 * 179.97438 * 14 13 12 41 41 H 1.08995 * 109.45192 * 180.02562 * 15 4 3 42 42 H 1.08997 * 109.49597 * 61.42827 * 16 15 4 43 43 H 1.08999 * 109.49735 * 301.33761 * 16 15 4 44 44 H 1.09006 * 109.58241 * 65.15035 * 17 16 15 45 45 H 1.08999 * 109.58776 * 185.43289 * 17 16 15 46 46 H 0.97002 * 119.99638 * 179.97438 * 22 21 19 47 47 H 1.08998 * 109.53194 * 186.67399 * 27 18 17 48 48 H 1.09004 * 109.67741 * 66.36758 * 27 18 17 49 49 H 1.08996 * 109.49687 * 298.56875 * 28 15 4 50 50 H 1.09000 * 109.49450 * 58.66978 * 28 15 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1337 1.2843 -0.5106 5 6 3.4303 1.4206 -1.8182 6 8 3.9133 2.4590 -2.2272 7 6 3.1691 0.3108 -2.7529 8 6 1.9682 -0.3467 -2.9293 9 7 2.1579 -1.2845 -3.8712 10 6 1.1417 -2.2138 -4.3708 11 7 3.4919 -1.2289 -4.2904 12 6 4.1028 -0.2833 -3.6315 13 6 5.5504 0.1076 -3.7814 14 6 6.4026 -0.7082 -2.8071 15 6 3.2990 2.4198 0.4002 16 6 1.9504 2.7633 1.0369 17 6 2.1201 3.9725 1.9619 18 7 3.1859 3.6841 2.9313 19 6 2.9589 3.8101 4.2758 20 1 1.9924 3.5578 4.6863 21 6 3.9711 4.2625 5.1112 22 7 5.0497 4.8157 4.5982 23 14 3.8024 4.0860 6.9631 24 1 3.6637 2.6496 7.3129 25 1 5.0099 4.6420 7.6253 26 1 2.6000 4.8260 7.4233 27 6 4.4998 3.2543 2.4254 28 6 4.3033 2.0531 1.4952 29 1 -1.0502 -0.0004 0.0004 30 1 3.0097 -0.8055 -0.6371 31 1 3.0095 -0.1475 1.0168 32 1 1.0449 -0.1424 -2.4075 33 1 1.1477 -3.1194 -3.7642 34 1 0.1598 -1.7442 -4.3127 35 1 1.3613 -2.4695 -5.4074 36 1 5.8763 -0.0901 -4.8026 37 1 5.6646 1.1694 -3.5629 38 1 6.0768 -0.5103 -1.7860 39 1 6.2884 -1.7700 -3.0258 40 1 7.4497 -0.4258 -2.9159 41 1 3.6676 3.2812 -0.1568 42 1 1.5931 1.9107 1.6144 43 1 1.2292 3.0016 0.2551 44 1 2.3899 4.8486 1.3722 45 1 1.1862 4.1616 2.4911 46 1 5.7568 5.1322 5.1820 47 1 5.1367 2.9680 3.2623 48 1 4.9659 4.0710 1.8741 49 1 3.9238 1.2072 2.0684 50 1 5.2569 1.7861 1.0396 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001483985128.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:43:32 Heat of formation + Delta-G solvation = 100.518523 kcal Electronic energy + Delta-G solvation = -31208.471952 eV Core-core repulsion = 27239.014123 eV Total energy + Delta-G solvation = -3969.457829 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.56532 -40.89865 -38.87295 -36.99237 -35.70521 -34.67005 -33.50675 -32.77400 -32.02392 -31.58747 -30.87896 -28.20503 -27.90343 -26.84448 -24.94606 -23.92893 -23.84392 -22.80890 -21.30267 -20.78759 -20.30322 -19.15248 -18.53260 -18.23731 -17.78519 -16.95695 -16.58643 -16.52111 -16.16601 -15.73950 -15.60630 -15.38300 -15.15334 -14.93735 -14.78465 -14.57414 -14.31061 -14.19887 -14.07896 -14.00008 -13.70171 -13.50436 -13.21156 -12.99393 -12.92167 -12.67779 -12.58736 -12.44885 -12.20804 -12.13823 -12.05662 -11.95021 -11.77100 -11.55482 -11.36125 -11.30595 -11.09956 -10.80799 -10.55973 -10.38205 -9.82700 -9.60190 -8.59360 -7.86869 -5.41268 0.59622 1.11824 1.40677 1.48737 1.50587 1.57637 1.58318 1.90412 1.93566 2.43045 2.51845 3.29660 3.33089 3.52885 3.65822 3.67924 3.76022 3.98077 4.04860 4.10174 4.19797 4.21789 4.35127 4.38862 4.43182 4.45798 4.48340 4.53939 4.62187 4.66719 4.67195 4.70118 4.79281 4.86171 5.02321 5.03677 5.06550 5.12759 5.13188 5.17552 5.24923 5.31455 5.42060 5.45299 5.56588 5.65925 5.67602 5.88650 6.35800 6.43218 6.55721 6.71824 7.14465 7.15890 7.82615 8.41499 9.19755 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.017180 B = 0.002935 C = 0.002696 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1629.436331 B = 9538.291485 C =10383.569528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.233 4.233 3 C 0.217 3.783 4 N -0.591 5.591 5 C 0.599 3.401 6 O -0.578 6.578 7 C -0.307 4.307 8 C 0.116 3.884 9 N -0.357 5.357 10 C 0.086 3.914 11 N -0.316 5.316 12 C 0.116 3.884 13 C -0.052 4.052 14 C -0.136 4.136 15 C 0.157 3.843 16 C -0.113 4.113 17 C 0.145 3.855 18 N -0.606 5.606 19 C -0.268 4.268 20 H 0.065 0.935 21 C -0.043 4.043 22 N -0.934 5.934 23 Si 0.969 3.031 24 H -0.274 1.274 25 H -0.296 1.296 26 H -0.275 1.275 27 C 0.187 3.813 28 C -0.128 4.128 29 H 0.248 0.752 30 H 0.110 0.890 31 H 0.104 0.896 32 H 0.201 0.799 33 H 0.097 0.903 34 H 0.117 0.883 35 H 0.098 0.902 36 H 0.092 0.908 37 H 0.073 0.927 38 H 0.044 0.956 39 H 0.062 0.938 40 H 0.077 0.923 41 H 0.069 0.931 42 H 0.069 0.931 43 H 0.065 0.935 44 H 0.005 0.995 45 H 0.060 0.940 46 H 0.251 0.749 47 H 0.049 0.951 48 H -0.007 1.007 49 H 0.068 0.932 50 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.360 -18.698 -16.873 26.869 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.235 4.235 3 C 0.095 3.905 4 N -0.321 5.321 5 C 0.388 3.612 6 O -0.457 6.457 7 C -0.322 4.322 8 C -0.036 4.036 9 N -0.134 5.134 10 C -0.052 4.052 11 N -0.138 5.138 12 C -0.051 4.051 13 C -0.091 4.091 14 C -0.194 4.194 15 C 0.054 3.946 16 C -0.153 4.153 17 C 0.019 3.981 18 N -0.330 5.330 19 C -0.398 4.398 20 H 0.083 0.917 21 C -0.239 4.239 22 N -0.579 5.579 23 Si 0.796 3.204 24 H -0.200 1.200 25 H -0.222 1.222 26 H -0.200 1.200 27 C 0.061 3.939 28 C -0.168 4.168 29 H 0.265 0.735 30 H 0.128 0.872 31 H 0.122 0.878 32 H 0.218 0.782 33 H 0.115 0.885 34 H 0.135 0.865 35 H 0.117 0.883 36 H 0.110 0.890 37 H 0.092 0.908 38 H 0.063 0.937 39 H 0.081 0.919 40 H 0.096 0.904 41 H 0.087 0.913 42 H 0.088 0.912 43 H 0.084 0.916 44 H 0.023 0.977 45 H 0.079 0.921 46 H 0.060 0.940 47 H 0.068 0.932 48 H 0.011 0.989 49 H 0.087 0.913 50 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -8.968 -19.123 -17.971 27.732 hybrid contribution 0.008 1.213 1.702 2.090 sum -8.960 -17.910 -16.270 25.802 Atomic orbital electron populations 1.25673 0.96474 0.97301 0.99039 1.23542 0.95016 1.02919 1.01990 1.18455 0.84730 0.85314 1.01987 1.48027 1.64409 1.12489 1.07158 1.17717 0.76144 0.85933 0.81411 1.90742 1.46129 1.31029 1.77838 1.20038 0.96265 1.06757 1.09114 1.23287 0.99484 0.89029 0.91848 1.48645 1.08553 1.27085 1.29156 1.22409 0.88338 0.92265 1.02227 1.77076 0.89944 1.22674 1.24068 1.22499 0.97219 0.92691 0.92644 1.20098 0.86209 1.00702 1.02079 1.21637 0.99859 0.99848 0.98065 1.20833 0.96142 0.88219 0.89412 1.22117 0.95668 0.99346 0.98194 1.20992 0.92144 0.94133 0.90872 1.44261 1.09112 1.77686 1.01894 1.19384 0.99159 1.37692 0.83611 0.91713 1.26040 0.97954 0.97356 1.02588 1.70168 1.09677 1.42560 1.35446 0.85341 0.76760 0.78126 0.80161 1.19964 1.22175 1.20013 1.20449 0.87258 0.91774 0.94425 1.22297 0.98341 0.99692 0.96465 0.73534 0.87196 0.87823 0.78238 0.88501 0.86474 0.88334 0.88968 0.90833 0.93667 0.91874 0.90375 0.91255 0.91188 0.91648 0.97695 0.92141 0.94018 0.93199 0.98897 0.91317 0.91934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.58 18.76 74.32 1.39 -1.18 16 2 C -0.23 -4.67 9.63 31.12 0.30 -4.37 16 3 C 0.22 4.92 5.05 84.57 0.43 5.34 16 4 N -0.59 -17.42 2.39 -812.03 -1.94 -19.36 16 5 C 0.60 19.28 7.28 86.66 0.63 19.91 16 6 O -0.58 -23.45 15.77 -4.04 -0.06 -23.52 16 7 C -0.31 -8.07 4.62 -20.15 -0.09 -8.17 16 8 C 0.12 2.25 9.70 84.28 0.82 3.07 16 9 N -0.36 -6.27 3.98 -367.79 -1.46 -7.73 16 10 C 0.09 0.59 11.44 127.77 1.46 2.05 16 11 N -0.32 -7.47 12.50 -46.67 -0.58 -8.05 16 12 C 0.12 2.99 6.52 43.52 0.28 3.28 16 13 C -0.05 -1.21 6.33 29.85 0.19 -1.03 16 14 C -0.14 -2.75 9.90 71.98 0.71 -2.03 16 15 C 0.16 5.61 2.48 45.02 0.11 5.72 16 16 C -0.11 -3.93 4.65 30.67 0.14 -3.79 16 17 C 0.14 6.21 6.50 86.36 0.56 6.77 16 18 N -0.61 -30.77 2.96 -698.37 -2.07 -32.84 16 19 C -0.27 -14.71 9.52 84.04 0.80 -13.91 16 20 H 0.07 3.44 7.86 -2.91 -0.02 3.41 16 21 C -0.04 -2.40 4.96 84.86 0.42 -1.98 16 22 N -0.93 -55.92 11.56 21.65 0.25 -55.67 16 23 Si 0.97 44.50 29.57 68.60 2.03 46.52 16 24 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 25 H -0.30 -13.72 7.11 99.48 0.71 -13.01 16 26 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 27 C 0.19 9.21 5.26 86.31 0.45 9.66 16 28 C -0.13 -4.89 5.30 30.67 0.16 -4.73 16 29 H 0.25 1.89 7.80 -4.41 -0.03 1.86 16 30 H 0.11 2.19 6.43 -2.39 -0.02 2.18 16 31 H 0.10 2.39 6.47 -2.39 -0.02 2.37 16 32 H 0.20 3.00 5.99 -2.91 -0.02 2.98 16 33 H 0.10 0.38 8.14 -2.39 -0.02 0.36 16 34 H 0.12 0.19 8.14 -2.39 -0.02 0.17 16 35 H 0.10 0.60 8.14 -2.39 -0.02 0.58 16 36 H 0.09 1.87 8.14 -2.38 -0.02 1.85 16 37 H 0.07 2.04 7.37 -2.39 -0.02 2.02 16 38 H 0.04 1.02 8.14 -2.39 -0.02 1.00 16 39 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 40 H 0.08 1.34 8.14 -2.39 -0.02 1.33 16 41 H 0.07 2.92 6.91 -2.39 -0.02 2.90 16 42 H 0.07 2.35 6.83 -2.39 -0.02 2.33 16 43 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 44 H 0.01 0.23 8.14 -2.38 -0.02 0.21 16 45 H 0.06 2.50 7.93 -2.39 -0.02 2.48 16 46 H 0.25 14.56 8.31 -92.71 -0.77 13.79 16 47 H 0.05 2.72 6.55 -2.39 -0.02 2.70 16 48 H -0.01 -0.38 8.14 -2.38 -0.02 -0.40 16 49 H 0.07 2.47 6.75 -2.39 -0.02 2.46 16 50 H 0.06 2.26 8.14 -2.39 -0.02 2.25 16 Total: -1.00 -75.71 402.73 5.86 -69.85 By element: Atomic # 1 Polarization: 15.25 SS G_CDS: 0.93 Total: 16.18 kcal Atomic # 6 Polarization: 5.84 SS G_CDS: 8.78 Total: 14.62 kcal Atomic # 7 Polarization: -117.84 SS G_CDS: -5.81 Total: -123.65 kcal Atomic # 8 Polarization: -23.45 SS G_CDS: -0.06 Total: -23.52 kcal Atomic # 14 Polarization: 44.50 SS G_CDS: 2.03 Total: 46.52 kcal Total: -75.71 5.86 -69.85 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001483985128.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 170.365 kcal (2) G-P(sol) polarization free energy of solvation -75.710 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.655 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.863 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.847 kcal (6) G-S(sol) free energy of system = (1) + (5) 100.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds