Wall clock time and date at job start Wed Apr 1 2020 02:51:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.30110 * 124.95081 * 2 1 4 4 C 1.35788 * 109.64560 * 180.26375 * 3 2 1 5 5 C 1.39738 * 133.59977 * 179.74465 * 4 3 2 6 6 C 1.36609 * 119.88439 * 180.02562 * 5 4 3 7 7 C 1.38775 * 120.66770 * 359.96206 * 6 5 4 8 8 C 1.37854 * 120.45162 * 0.02562 * 7 6 5 9 9 C 1.38830 * 119.69106 * 359.97438 * 8 7 6 10 10 N 1.36033 * 124.95229 * 179.84220 * 2 1 3 11 11 C 1.46501 * 126.35044 * 0.02562 * 10 2 1 12 12 C 1.50700 * 109.47004 * 269.68549 * 11 10 2 13 13 O 1.21280 * 120.00133 * 359.97438 * 12 11 10 14 14 N 1.34775 * 120.00028 * 179.97438 * 12 11 10 15 15 C 1.46502 * 119.99947 * 179.97438 * 14 12 11 16 16 C 1.53004 * 109.46925 * 180.02562 * 15 14 12 17 17 H 1.08995 * 109.47216 * 295.00133 * 16 15 14 18 18 N 1.46498 * 109.47065 * 55.00022 * 16 15 14 19 19 C 1.36943 * 119.99752 * 204.72207 * 18 16 15 20 20 H 1.08002 * 119.99793 * 0.27665 * 19 18 16 21 21 C 1.38811 * 120.00012 * 180.27737 * 19 18 16 22 22 N 1.31624 * 119.99698 * 0.02562 * 21 19 18 23 23 Si 1.86795 * 120.00072 * 180.02562 * 21 19 18 24 24 H 1.48495 * 109.47159 * 0.02562 * 23 21 19 25 25 H 1.48505 * 109.47290 * 120.00044 * 23 21 19 26 26 H 1.48503 * 109.47163 * 240.00049 * 23 21 19 27 27 C 1.52999 * 109.47083 * 175.00128 * 16 15 14 28 28 C 1.52997 * 109.47278 * 179.97438 * 27 16 15 29 29 C 1.52999 * 109.47156 * 299.99894 * 27 16 15 30 30 H 1.08994 * 109.47418 * 270.14891 * 1 2 3 31 31 H 1.09006 * 109.46836 * 30.15709 * 1 2 3 32 32 H 1.09005 * 109.46957 * 150.14824 * 1 2 3 33 33 H 1.08000 * 120.05963 * 0.02562 * 5 4 3 34 34 H 1.07996 * 119.66625 * 179.97438 * 6 5 4 35 35 H 1.07995 * 119.77152 * 180.02562 * 7 6 5 36 36 H 1.08004 * 120.15394 * 179.97438 * 8 7 6 37 37 H 1.08992 * 109.47656 * 149.68337 * 11 10 2 38 38 H 1.08999 * 109.46853 * 29.67877 * 11 10 2 39 39 H 0.96997 * 119.99994 * 0.02562 * 14 12 11 40 40 H 1.08997 * 109.46993 * 60.00870 * 15 14 12 41 41 H 1.08999 * 109.47017 * 300.00291 * 15 14 12 42 42 H 0.97001 * 120.00384 * 25.00562 * 18 16 15 43 43 H 0.96999 * 119.99739 * 180.02562 * 22 21 19 44 44 H 1.09003 * 109.47054 * 59.99725 * 27 16 15 45 45 H 1.08996 * 109.47253 * 180.02562 * 28 27 16 46 46 H 1.08995 * 109.47275 * 300.00159 * 28 27 16 47 47 H 1.09003 * 109.47146 * 59.99973 * 28 27 16 48 48 H 1.09003 * 109.46926 * 60.00284 * 29 27 16 49 49 H 1.08998 * 109.47115 * 179.97438 * 29 27 16 50 50 H 1.08994 * 109.47213 * 300.00018 * 29 27 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2523 1.0664 0.0000 4 6 3.5620 0.7080 -0.0059 5 6 4.7586 1.4297 -0.0130 6 6 5.9532 0.7670 -0.0183 7 6 5.9931 -0.6202 -0.0160 8 6 4.8253 -1.3527 -0.0087 9 6 3.6019 -0.6965 -0.0032 10 7 2.2863 -1.1150 0.0031 11 6 1.8167 -2.5027 0.0064 12 6 1.6625 -2.9774 1.4283 13 8 1.9200 -2.2303 2.3483 14 7 1.2384 -4.2322 1.6776 15 6 1.0891 -4.6938 3.0599 16 6 0.5985 -6.1431 3.0634 17 1 -0.4024 -6.1889 2.6343 18 7 1.5094 -6.9689 2.2668 19 6 1.0604 -8.1315 1.6993 20 1 0.0335 -8.4372 1.8352 21 6 1.9250 -8.9169 0.9494 22 7 3.1766 -8.5444 0.7842 23 14 1.3122 -10.5023 0.1746 24 1 -0.1224 -10.6935 0.5069 25 1 1.4725 -10.4270 -1.2999 26 1 2.0994 -11.6466 0.7003 27 6 0.5616 -6.6656 4.5009 28 6 0.0704 -8.1146 4.5044 29 6 1.9666 -6.6014 5.1031 30 1 -0.3634 0.0027 1.0276 31 1 -0.3633 0.8886 -0.5163 32 1 -0.3633 -0.8914 -0.5116 33 1 4.7391 2.5095 -0.0143 34 1 6.8758 1.3283 -0.0243 35 1 6.9455 -1.1292 -0.0199 36 1 4.8620 -2.4321 -0.0073 37 1 2.5406 -3.1325 -0.5105 38 1 0.8547 -2.5618 -0.5027 39 1 1.0328 -4.8298 0.9418 40 1 0.3656 -4.0638 3.5772 41 1 2.0514 -4.6351 3.5685 42 1 2.4317 -6.6943 2.1448 43 1 3.7806 -9.0931 0.2598 44 1 -0.1162 -6.0511 5.0935 45 1 0.0437 -8.4867 5.5286 46 1 -0.9306 -8.1600 4.0756 47 1 0.7478 -8.7293 3.9117 48 1 2.3161 -5.5689 5.1007 49 1 1.9402 -6.9732 6.1274 50 1 2.6443 -7.2158 4.5106 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001496557356.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:51:06 Heat of formation + Delta-G solvation = 42.136975 kcal Electronic energy + Delta-G solvation = -30343.744233 eV Core-core repulsion = 26371.754790 eV Total energy + Delta-G solvation = -3971.989443 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.24579 -39.56184 -37.58148 -37.26447 -34.21580 -34.05128 -33.01162 -31.53449 -30.66344 -30.25641 -28.78445 -27.61004 -27.09494 -26.32276 -23.83327 -22.49700 -22.14132 -22.03719 -20.77210 -19.92010 -18.86687 -17.66801 -17.40266 -17.22314 -17.09113 -15.62223 -15.54624 -15.36265 -15.27261 -14.83591 -14.36960 -14.12445 -14.01171 -13.77898 -13.53723 -13.39402 -13.22821 -13.18454 -13.06020 -12.84092 -12.45040 -12.32086 -11.95831 -11.87167 -11.55900 -11.47246 -11.40799 -11.12275 -11.02167 -10.89941 -10.70983 -10.60607 -10.35268 -10.19106 -10.01857 -9.95099 -9.75600 -9.57081 -9.03344 -8.82261 -8.28304 -8.06560 -7.13575 -5.92392 -3.21545 0.95718 1.52057 2.34907 2.59564 2.74800 3.31252 3.38133 3.39600 3.40722 3.90535 4.07777 4.37245 4.44643 4.49881 4.75682 4.83128 4.98117 4.99485 5.10281 5.26038 5.31590 5.32845 5.36820 5.42036 5.43633 5.58455 5.64283 5.64789 5.72398 5.73544 5.77444 5.99395 6.11995 6.12684 6.26433 6.32059 6.44714 6.45573 6.51273 6.52741 6.54161 6.59777 6.70944 6.78479 6.87571 6.96953 7.04398 7.25834 7.57622 7.66303 7.88014 8.24530 8.28409 9.37331 9.90971 10.27117 11.29237 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.012264 B = 0.002744 C = 0.002576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2282.622754 B =10201.636983 C =10867.324375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.294 3.706 3 N -0.498 5.498 4 C 0.049 3.951 5 C -0.070 4.070 6 C -0.130 4.130 7 C -0.106 4.106 8 C -0.104 4.104 9 C 0.058 3.942 10 N -0.470 5.470 11 C 0.088 3.912 12 C 0.491 3.509 13 O -0.534 6.534 14 N -0.705 5.705 15 C 0.113 3.887 16 C 0.168 3.832 17 H 0.054 0.946 18 N -0.718 5.718 19 C -0.237 4.237 20 H 0.073 0.927 21 C -0.010 4.010 22 N -0.929 5.929 23 Si 0.901 3.099 24 H -0.280 1.280 25 H -0.292 1.292 26 H -0.292 1.292 27 C -0.107 4.107 28 C -0.141 4.141 29 C -0.142 4.142 30 H 0.089 0.911 31 H 0.095 0.905 32 H 0.078 0.922 33 H 0.126 0.874 34 H 0.127 0.873 35 H 0.129 0.871 36 H 0.122 0.878 37 H 0.123 0.877 38 H 0.122 0.878 39 H 0.412 0.588 40 H 0.063 0.937 41 H 0.070 0.930 42 H 0.385 0.615 43 H 0.255 0.745 44 H 0.049 0.951 45 H 0.031 0.969 46 H 0.040 0.960 47 H 0.088 0.912 48 H 0.044 0.956 49 H 0.039 0.961 50 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.316 13.859 -1.878 14.176 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.029 3.971 3 N -0.218 5.218 4 C -0.069 4.069 5 C -0.089 4.089 6 C -0.150 4.150 7 C -0.126 4.126 8 C -0.124 4.124 9 C -0.051 4.051 10 N -0.160 5.160 11 C -0.038 4.038 12 C 0.274 3.726 13 O -0.411 6.411 14 N -0.358 5.358 15 C -0.012 4.012 16 C 0.058 3.942 17 H 0.072 0.928 18 N -0.360 5.360 19 C -0.367 4.367 20 H 0.091 0.909 21 C -0.206 4.206 22 N -0.576 5.576 23 Si 0.733 3.267 24 H -0.206 1.206 25 H -0.220 1.220 26 H -0.219 1.219 27 C -0.129 4.129 28 C -0.198 4.198 29 C -0.199 4.199 30 H 0.108 0.892 31 H 0.114 0.886 32 H 0.097 0.903 33 H 0.144 0.856 34 H 0.144 0.856 35 H 0.147 0.853 36 H 0.140 0.860 37 H 0.141 0.859 38 H 0.140 0.860 39 H 0.248 0.752 40 H 0.081 0.919 41 H 0.088 0.912 42 H 0.219 0.781 43 H 0.065 0.935 44 H 0.067 0.933 45 H 0.050 0.950 46 H 0.059 0.941 47 H 0.107 0.893 48 H 0.063 0.937 49 H 0.058 0.942 50 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -2.558 14.944 -1.287 15.215 hybrid contribution 0.242 -2.257 -0.641 2.359 sum -2.316 12.687 -1.928 13.040 Atomic orbital electron populations 1.20392 0.84520 1.04349 1.04410 1.23541 0.95640 0.80531 0.97409 1.70391 1.00925 1.27028 1.23454 1.19001 0.92054 0.90273 1.05588 1.19954 0.89207 0.99523 1.00239 1.20608 0.97325 0.94356 1.02704 1.20859 0.97220 0.93949 1.00591 1.20028 0.89199 0.99696 1.03525 1.18807 0.85092 0.95158 1.05999 1.44681 1.04862 1.05986 1.60445 1.21649 1.04102 0.81336 0.96724 1.20639 0.78276 0.82770 0.90888 1.90756 1.49741 1.54915 1.45672 1.45923 1.66563 1.12843 1.10438 1.21801 1.01705 0.95947 0.81701 1.20542 0.94765 0.87442 0.91465 0.92822 1.42446 1.10411 1.24160 1.59012 1.19229 0.95495 0.97962 1.24064 0.90874 1.24715 0.95761 0.99043 1.01102 1.69663 1.04051 1.39272 1.44662 0.86212 0.77822 0.83818 0.78878 1.20566 1.21953 1.21931 1.21617 0.96358 0.97348 0.97599 1.21837 1.01176 0.96840 0.99935 1.21797 0.97714 1.00912 0.99510 0.89209 0.88579 0.90330 0.85626 0.85554 0.85336 0.85994 0.85935 0.85970 0.75179 0.91867 0.91228 0.78089 0.93518 0.93269 0.94959 0.94117 0.89348 0.93733 0.94232 0.91241 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.71 10.17 36.00 0.37 -0.35 16 2 C 0.29 4.03 7.85 -154.83 -1.22 2.82 16 3 N -0.50 -7.89 11.27 -8.24 -0.09 -7.98 16 4 C 0.05 0.76 7.23 -84.70 -0.61 0.15 16 5 C -0.07 -0.91 10.05 -39.61 -0.40 -1.31 16 6 C -0.13 -1.45 9.96 -39.97 -0.40 -1.85 16 7 C -0.11 -1.25 10.03 -39.52 -0.40 -1.64 16 8 C -0.10 -1.42 10.05 -39.50 -0.40 -1.81 16 9 C 0.06 0.88 6.87 -83.99 -0.58 0.30 16 10 N -0.47 -6.52 2.29 -112.44 -0.26 -6.77 16 11 C 0.09 1.01 6.41 -5.19 -0.03 0.97 16 12 C 0.49 7.18 7.90 -10.99 -0.09 7.09 16 13 O -0.53 -9.99 16.43 5.56 0.09 -9.90 16 14 N -0.71 -10.08 5.39 -60.29 -0.32 -10.41 16 15 C 0.11 1.74 5.02 -4.04 -0.02 1.72 16 16 C 0.17 2.82 2.35 -67.93 -0.16 2.66 16 17 H 0.05 0.91 8.08 -51.93 -0.42 0.49 16 18 N -0.72 -14.81 3.68 -53.43 -0.20 -15.01 16 19 C -0.24 -5.55 7.55 -15.06 -0.11 -5.66 16 20 H 0.07 1.70 7.38 -52.49 -0.39 1.32 16 21 C -0.01 -0.25 5.50 -17.43 -0.10 -0.34 16 22 N -0.93 -25.19 13.06 55.49 0.72 -24.47 16 23 Si 0.90 20.49 29.55 -169.99 -5.02 15.47 16 24 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 25 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 26 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 27 C -0.11 -1.73 2.80 -90.62 -0.25 -1.98 16 28 C -0.14 -2.39 8.26 37.16 0.31 -2.09 16 29 C -0.14 -2.32 8.69 37.16 0.32 -1.99 16 30 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.08 0.53 7.01 -51.93 -0.36 0.17 16 33 H 0.13 1.40 8.06 -52.49 -0.42 0.97 16 34 H 0.13 1.03 8.06 -52.49 -0.42 0.61 16 35 H 0.13 1.18 8.06 -52.49 -0.42 0.76 16 36 H 0.12 1.55 8.06 -52.48 -0.42 1.13 16 37 H 0.12 1.26 8.14 -51.93 -0.42 0.83 16 38 H 0.12 0.96 6.99 -51.93 -0.36 0.60 16 39 H 0.41 5.72 8.14 -40.82 -0.33 5.39 16 40 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 41 H 0.07 1.19 6.17 -51.93 -0.32 0.87 16 42 H 0.38 8.80 7.80 -40.82 -0.32 8.48 16 43 H 0.25 6.85 8.31 -40.82 -0.34 6.51 16 44 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 45 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 46 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 47 H 0.09 1.79 5.99 -51.93 -0.31 1.48 16 48 H 0.04 0.69 6.32 -51.93 -0.33 0.36 16 49 H 0.04 0.59 8.14 -51.93 -0.42 0.16 16 50 H 0.07 1.32 7.60 -51.93 -0.39 0.93 16 LS Contribution 406.86 15.07 6.13 6.13 Total: -1.00 -31.53 406.86 -10.46 -41.99 By element: Atomic # 1 Polarization: 22.00 SS G_CDS: -7.75 Total: 14.25 kcal Atomic # 6 Polarization: 0.45 SS G_CDS: -3.76 Total: -3.32 kcal Atomic # 7 Polarization: -64.48 SS G_CDS: -0.15 Total: -64.63 kcal Atomic # 8 Polarization: -9.99 SS G_CDS: 0.09 Total: -9.90 kcal Atomic # 14 Polarization: 20.49 SS G_CDS: -5.02 Total: 15.47 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -31.53 -10.46 -41.99 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001496557356.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.126 kcal (2) G-P(sol) polarization free energy of solvation -31.531 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.989 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.137 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds