Wall clock time and date at job start Wed Apr 1 2020 02:51:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.30110 * 124.95081 * 2 1 4 4 C 1.35788 * 109.64560 * 180.26375 * 3 2 1 5 5 C 1.39738 * 133.59977 * 179.74465 * 4 3 2 6 6 C 1.36609 * 119.88439 * 180.02562 * 5 4 3 7 7 C 1.38775 * 120.66770 * 359.96206 * 6 5 4 8 8 C 1.37854 * 120.45162 * 0.02562 * 7 6 5 9 9 C 1.38830 * 119.69106 * 359.97438 * 8 7 6 10 10 N 1.36033 * 124.95229 * 179.84220 * 2 1 3 11 11 C 1.46501 * 126.35044 * 0.02562 * 10 2 1 12 12 C 1.50700 * 109.47004 * 269.68549 * 11 10 2 13 13 O 1.21280 * 120.00133 * 359.97438 * 12 11 10 14 14 N 1.34775 * 120.00028 * 179.97438 * 12 11 10 15 15 C 1.46502 * 119.99947 * 179.97438 * 14 12 11 16 16 C 1.53004 * 109.46925 * 180.02562 * 15 14 12 17 17 H 1.08995 * 109.47216 * 295.00133 * 16 15 14 18 18 N 1.46498 * 109.47065 * 55.00022 * 16 15 14 19 19 C 1.36943 * 119.99752 * 204.72207 * 18 16 15 20 20 H 1.08002 * 119.99793 * 0.27665 * 19 18 16 21 21 C 1.38811 * 120.00012 * 180.27737 * 19 18 16 22 22 N 1.31624 * 119.99698 * 0.02562 * 21 19 18 23 23 Si 1.86795 * 120.00072 * 180.02562 * 21 19 18 24 24 H 1.48495 * 109.47159 * 0.02562 * 23 21 19 25 25 H 1.48505 * 109.47290 * 120.00044 * 23 21 19 26 26 H 1.48503 * 109.47163 * 240.00049 * 23 21 19 27 27 C 1.52999 * 109.47083 * 175.00128 * 16 15 14 28 28 C 1.52997 * 109.47278 * 179.97438 * 27 16 15 29 29 C 1.52999 * 109.47156 * 299.99894 * 27 16 15 30 30 H 1.08994 * 109.47418 * 270.14891 * 1 2 3 31 31 H 1.09006 * 109.46836 * 30.15709 * 1 2 3 32 32 H 1.09005 * 109.46957 * 150.14824 * 1 2 3 33 33 H 1.08000 * 120.05963 * 0.02562 * 5 4 3 34 34 H 1.07996 * 119.66625 * 179.97438 * 6 5 4 35 35 H 1.07995 * 119.77152 * 180.02562 * 7 6 5 36 36 H 1.08004 * 120.15394 * 179.97438 * 8 7 6 37 37 H 1.08992 * 109.47656 * 149.68337 * 11 10 2 38 38 H 1.08999 * 109.46853 * 29.67877 * 11 10 2 39 39 H 0.96997 * 119.99994 * 0.02562 * 14 12 11 40 40 H 1.08997 * 109.46993 * 60.00870 * 15 14 12 41 41 H 1.08999 * 109.47017 * 300.00291 * 15 14 12 42 42 H 0.97001 * 120.00384 * 25.00562 * 18 16 15 43 43 H 0.96999 * 119.99739 * 180.02562 * 22 21 19 44 44 H 1.09003 * 109.47054 * 59.99725 * 27 16 15 45 45 H 1.08996 * 109.47253 * 180.02562 * 28 27 16 46 46 H 1.08995 * 109.47275 * 300.00159 * 28 27 16 47 47 H 1.09003 * 109.47146 * 59.99973 * 28 27 16 48 48 H 1.09003 * 109.46926 * 60.00284 * 29 27 16 49 49 H 1.08998 * 109.47115 * 179.97438 * 29 27 16 50 50 H 1.08994 * 109.47213 * 300.00018 * 29 27 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2523 1.0664 0.0000 4 6 3.5620 0.7080 -0.0059 5 6 4.7586 1.4297 -0.0130 6 6 5.9532 0.7670 -0.0183 7 6 5.9931 -0.6202 -0.0160 8 6 4.8253 -1.3527 -0.0087 9 6 3.6019 -0.6965 -0.0032 10 7 2.2863 -1.1150 0.0031 11 6 1.8167 -2.5027 0.0064 12 6 1.6625 -2.9774 1.4283 13 8 1.9200 -2.2303 2.3483 14 7 1.2384 -4.2322 1.6776 15 6 1.0891 -4.6938 3.0599 16 6 0.5985 -6.1431 3.0634 17 1 -0.4024 -6.1889 2.6343 18 7 1.5094 -6.9689 2.2668 19 6 1.0604 -8.1315 1.6993 20 1 0.0335 -8.4372 1.8352 21 6 1.9250 -8.9169 0.9494 22 7 3.1766 -8.5444 0.7842 23 14 1.3122 -10.5023 0.1746 24 1 -0.1224 -10.6935 0.5069 25 1 1.4725 -10.4270 -1.2999 26 1 2.0994 -11.6466 0.7003 27 6 0.5616 -6.6656 4.5009 28 6 0.0704 -8.1146 4.5044 29 6 1.9666 -6.6014 5.1031 30 1 -0.3634 0.0027 1.0276 31 1 -0.3633 0.8886 -0.5163 32 1 -0.3633 -0.8914 -0.5116 33 1 4.7391 2.5095 -0.0143 34 1 6.8758 1.3283 -0.0243 35 1 6.9455 -1.1292 -0.0199 36 1 4.8620 -2.4321 -0.0073 37 1 2.5406 -3.1325 -0.5105 38 1 0.8547 -2.5618 -0.5027 39 1 1.0328 -4.8298 0.9418 40 1 0.3656 -4.0638 3.5772 41 1 2.0514 -4.6351 3.5685 42 1 2.4317 -6.6943 2.1448 43 1 3.7806 -9.0931 0.2598 44 1 -0.1162 -6.0511 5.0935 45 1 0.0437 -8.4867 5.5286 46 1 -0.9306 -8.1600 4.0756 47 1 0.7478 -8.7293 3.9117 48 1 2.3161 -5.5689 5.1007 49 1 1.9402 -6.9732 6.1274 50 1 2.6443 -7.2158 4.5106 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001496557356.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:51:05 Heat of formation + Delta-G solvation = 23.688574 kcal Electronic energy + Delta-G solvation = -30344.544216 eV Core-core repulsion = 26371.754790 eV Total energy + Delta-G solvation = -3972.789426 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -43.23318 -40.78430 -38.90289 -38.30575 -35.37767 -35.22586 -34.72634 -32.38800 -32.02011 -31.49082 -30.08807 -28.54528 -28.24196 -27.68201 -25.53666 -23.81425 -23.14099 -23.04973 -21.92586 -20.98524 -20.21273 -19.25961 -18.46372 -18.34342 -18.22890 -16.87654 -16.81888 -16.43983 -16.27265 -16.18963 -15.91862 -15.24774 -15.16392 -14.98638 -14.90399 -14.67972 -14.46144 -14.22718 -13.98171 -13.85080 -13.65866 -13.43923 -13.09420 -12.93077 -12.81095 -12.79460 -12.67802 -12.49593 -12.42303 -12.40250 -12.14539 -11.93015 -11.88356 -11.74585 -11.39127 -11.19504 -10.99605 -10.97836 -10.79396 -10.07193 -9.27113 -9.07101 -8.92346 -7.85146 -5.10702 -0.01939 0.53445 1.37928 1.45929 1.49861 1.54223 1.60038 1.75471 2.28211 2.61711 2.90861 3.19978 3.44527 3.48886 3.63842 3.68727 3.90868 3.94791 4.00412 4.06087 4.14478 4.27519 4.34293 4.36981 4.42159 4.43927 4.50346 4.63765 4.67561 4.68378 4.75050 4.87207 4.94631 4.96171 4.97683 5.11767 5.19539 5.21468 5.27414 5.32054 5.46853 5.49472 5.56017 5.56407 5.58352 5.66237 5.82305 5.95629 6.09258 6.35210 6.50091 6.86251 7.12480 7.44312 8.15382 8.40472 9.37576 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.012264 B = 0.002744 C = 0.002576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2282.622754 B =10201.636983 C =10867.324375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.286 3.714 3 N -0.531 5.531 4 C 0.016 3.984 5 C -0.085 4.085 6 C -0.122 4.122 7 C -0.105 4.105 8 C -0.124 4.124 9 C 0.032 3.968 10 N -0.475 5.475 11 C 0.091 3.909 12 C 0.495 3.505 13 O -0.577 6.577 14 N -0.700 5.700 15 C 0.121 3.879 16 C 0.171 3.829 17 H 0.062 0.938 18 N -0.720 5.720 19 C -0.207 4.207 20 H 0.080 0.920 21 C -0.069 4.069 22 N -0.965 5.965 23 Si 0.952 3.048 24 H -0.267 1.267 25 H -0.300 1.300 26 H -0.307 1.307 27 C -0.106 4.106 28 C -0.136 4.136 29 C -0.135 4.135 30 H 0.089 0.911 31 H 0.108 0.892 32 H 0.106 0.894 33 H 0.138 0.862 34 H 0.161 0.839 35 H 0.156 0.844 36 H 0.123 0.877 37 H 0.134 0.866 38 H 0.163 0.837 39 H 0.416 0.584 40 H 0.077 0.923 41 H 0.052 0.948 42 H 0.373 0.627 43 H 0.245 0.755 44 H 0.077 0.923 45 H 0.048 0.952 46 H 0.047 0.953 47 H 0.051 0.949 48 H 0.049 0.951 49 H 0.054 0.946 50 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.688 14.296 -1.759 14.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.021 3.979 3 N -0.252 5.252 4 C -0.101 4.101 5 C -0.105 4.105 6 C -0.142 4.142 7 C -0.124 4.124 8 C -0.145 4.145 9 C -0.077 4.077 10 N -0.164 5.164 11 C -0.035 4.035 12 C 0.280 3.720 13 O -0.457 6.457 14 N -0.352 5.352 15 C -0.003 4.003 16 C 0.062 3.938 17 H 0.080 0.920 18 N -0.361 5.361 19 C -0.339 4.339 20 H 0.097 0.903 21 C -0.261 4.261 22 N -0.617 5.617 23 Si 0.784 3.216 24 H -0.192 1.192 25 H -0.228 1.228 26 H -0.236 1.236 27 C -0.127 4.127 28 C -0.194 4.194 29 C -0.193 4.193 30 H 0.107 0.893 31 H 0.127 0.873 32 H 0.125 0.875 33 H 0.156 0.844 34 H 0.179 0.821 35 H 0.173 0.827 36 H 0.141 0.859 37 H 0.152 0.848 38 H 0.181 0.819 39 H 0.253 0.747 40 H 0.095 0.905 41 H 0.070 0.930 42 H 0.205 0.795 43 H 0.054 0.946 44 H 0.096 0.904 45 H 0.067 0.933 46 H 0.066 0.934 47 H 0.070 0.930 48 H 0.068 0.932 49 H 0.073 0.927 50 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -3.987 15.375 -1.157 15.926 hybrid contribution 0.651 -2.334 -0.570 2.490 sum -3.337 13.041 -1.728 13.571 Atomic orbital electron populations 1.20591 0.81588 1.06404 1.04906 1.24367 0.97249 0.80161 0.96092 1.70359 1.01415 1.28381 1.25069 1.19500 0.92811 0.91104 1.06721 1.20299 0.89227 1.00381 1.00547 1.21011 0.98015 0.94393 1.00791 1.21274 0.97715 0.94423 0.99020 1.20267 0.89594 1.00049 1.04593 1.19160 0.86133 0.95469 1.06906 1.44834 1.04519 1.06732 1.60341 1.21843 1.06484 0.80431 0.94707 1.21121 0.76923 0.82134 0.91815 1.90740 1.51615 1.55997 1.47346 1.45862 1.66288 1.12913 1.10093 1.21635 1.01040 0.95185 0.82441 1.20670 0.94137 0.87520 0.91445 0.91981 1.42517 1.10367 1.23883 1.59295 1.19475 0.95225 0.97812 1.21401 0.90265 1.25252 0.96096 1.01645 1.03129 1.69792 1.05072 1.40245 1.46566 0.85381 0.77728 0.80941 0.77559 1.19153 1.22758 1.23556 1.21598 0.96684 0.97273 0.97175 1.21755 1.00538 0.96699 1.00393 1.21715 0.97185 1.00620 0.99762 0.89254 0.87311 0.87539 0.84383 0.82117 0.82662 0.85860 0.84836 0.81916 0.74723 0.90528 0.92973 0.79475 0.94605 0.90431 0.93298 0.93350 0.92955 0.93192 0.92725 0.94579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.27 10.17 71.23 0.72 -0.55 16 2 C 0.29 7.73 7.85 137.92 1.08 8.81 16 3 N -0.53 -17.07 11.27 -179.97 -2.03 -19.10 16 4 C 0.02 0.51 7.23 39.45 0.29 0.79 16 5 C -0.09 -2.20 10.05 22.25 0.22 -1.98 16 6 C -0.12 -2.56 9.96 22.02 0.22 -2.34 16 7 C -0.10 -2.34 10.03 22.31 0.22 -2.12 16 8 C -0.12 -3.40 10.05 22.32 0.22 -3.17 16 9 C 0.03 0.97 6.87 38.86 0.27 1.24 16 10 N -0.47 -12.93 2.29 -509.65 -1.17 -14.10 16 11 C 0.09 1.93 6.41 85.63 0.55 2.48 16 12 C 0.50 13.97 7.90 87.66 0.69 14.66 16 13 O -0.58 -21.46 16.43 -3.03 -0.05 -21.51 16 14 N -0.70 -19.04 5.39 -463.06 -2.49 -21.54 16 15 C 0.12 3.57 5.02 86.38 0.43 4.01 16 16 C 0.17 5.42 2.35 44.99 0.11 5.52 16 17 H 0.06 1.92 8.08 -2.39 -0.02 1.90 16 18 N -0.72 -29.24 3.68 -322.94 -1.19 -30.43 16 19 C -0.21 -9.55 7.55 84.03 0.63 -8.91 16 20 H 0.08 3.54 7.38 -2.91 -0.02 3.52 16 21 C -0.07 -3.50 5.50 84.86 0.47 -3.03 16 22 N -0.97 -53.36 13.06 21.65 0.28 -53.08 16 23 Si 0.95 42.31 29.55 68.60 2.03 44.34 16 24 H -0.27 -11.10 7.11 99.48 0.71 -10.39 16 25 H -0.30 -13.55 7.11 99.48 0.71 -12.84 16 26 H -0.31 -14.28 7.11 99.48 0.71 -13.57 16 27 C -0.11 -3.16 2.80 -10.80 -0.03 -3.19 16 28 C -0.14 -4.35 8.26 71.98 0.59 -3.76 16 29 C -0.14 -4.25 8.69 71.98 0.63 -3.63 16 30 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 31 H 0.11 1.50 8.14 -2.38 -0.02 1.48 16 32 H 0.11 1.11 7.01 -2.38 -0.02 1.09 16 33 H 0.14 3.04 8.06 -2.91 -0.02 3.01 16 34 H 0.16 2.17 8.06 -2.91 -0.02 2.14 16 35 H 0.16 2.52 8.06 -2.91 -0.02 2.49 16 36 H 0.12 3.18 8.06 -2.91 -0.02 3.16 16 37 H 0.13 2.57 8.14 -2.39 -0.02 2.56 16 38 H 0.16 2.05 6.99 -2.39 -0.02 2.04 16 39 H 0.42 10.86 8.14 -92.71 -0.75 10.10 16 40 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 41 H 0.05 1.75 6.17 -2.39 -0.01 1.73 16 42 H 0.37 17.17 7.80 -92.71 -0.72 16.45 16 43 H 0.24 13.53 8.31 -92.71 -0.77 12.76 16 44 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 45 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 46 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 47 H 0.05 2.06 5.99 -2.39 -0.01 2.04 16 48 H 0.05 1.50 6.32 -2.39 -0.02 1.48 16 49 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 50 H 0.04 1.36 7.60 -2.39 -0.02 1.35 16 Total: -1.00 -70.50 406.86 2.19 -68.31 By element: Atomic # 1 Polarization: 42.79 SS G_CDS: -0.51 Total: 42.27 kcal Atomic # 6 Polarization: -2.48 SS G_CDS: 7.32 Total: 4.85 kcal Atomic # 7 Polarization: -131.66 SS G_CDS: -6.60 Total: -138.26 kcal Atomic # 8 Polarization: -21.46 SS G_CDS: -0.05 Total: -21.51 kcal Atomic # 14 Polarization: 42.31 SS G_CDS: 2.03 Total: 44.34 kcal Total: -70.50 2.19 -68.31 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001496557356.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.000 kcal (2) G-P(sol) polarization free energy of solvation -70.501 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.499 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.311 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds