Wall clock time and date at job start Wed Apr 1 2020 03:03:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.31878 * 118.95417 * 2 1 4 4 C 1.32138 * 120.96826 * 179.68499 * 3 2 1 5 5 C 1.39969 * 118.91992 * 0.61219 * 4 3 2 6 6 C 1.47831 * 120.94009 * 179.70278 * 5 4 3 7 7 O 1.21555 * 120.00140 * 174.39458 * 6 5 4 8 8 N 1.34780 * 119.99914 * 354.38144 * 6 5 4 9 9 C 1.46495 * 120.00307 * 180.02562 * 8 6 5 10 10 H 1.08998 * 110.01527 * 326.40046 * 9 8 6 11 11 C 1.53875 * 110.07060 * 87.81265 * 9 8 6 12 12 C 1.54265 * 106.59643 * 119.31246 * 11 9 8 13 13 C 1.54887 * 104.19806 * 23.60814 * 12 11 9 14 14 C 1.54266 * 110.03655 * 205.00546 * 9 8 6 15 15 H 1.08998 * 110.48368 * 335.87144 * 14 9 8 16 16 C 1.52997 * 110.48552 * 98.37775 * 14 9 8 17 17 N 1.46502 * 109.47266 * 185.00317 * 16 14 9 18 18 C 1.36929 * 120.00389 * 179.97438 * 17 16 14 19 19 H 1.08001 * 120.00155 * 0.02562 * 18 17 16 20 20 C 1.38815 * 120.00296 * 179.97438 * 18 17 16 21 21 N 1.31625 * 119.99711 * 0.02562 * 20 18 17 22 22 Si 1.86793 * 120.00128 * 179.97438 * 20 18 17 23 23 H 1.48496 * 109.47420 * 0.02562 * 22 20 18 24 24 H 1.48507 * 109.47088 * 120.00724 * 22 20 18 25 25 H 1.48497 * 109.47530 * 240.00324 * 22 20 18 26 26 C 1.39935 * 118.12096 * 359.42604 * 5 4 3 27 27 C 1.50698 * 120.53603 * 180.29387 * 26 5 4 28 28 C 1.52993 * 117.49775 * 179.75558 * 27 26 5 29 29 C 1.53003 * 117.49965 * 111.09541 * 27 26 5 30 30 N 1.31854 * 118.95257 * 180.02562 * 2 1 3 31 31 H 1.09006 * 109.46939 * 269.97139 * 1 2 3 32 32 H 1.08995 * 109.47156 * 29.96943 * 1 2 3 33 33 H 1.08997 * 109.47256 * 149.97832 * 1 2 3 34 34 H 1.07997 * 120.54227 * 180.31257 * 4 3 2 35 35 H 0.97005 * 119.99762 * 0.02562 * 8 6 5 36 36 H 1.09003 * 110.03058 * 238.59374 * 11 9 8 37 37 H 1.09001 * 110.03368 * 0.02562 * 11 9 8 38 38 H 1.09000 * 110.48584 * 142.28848 * 12 11 9 39 39 H 1.09007 * 110.48228 * 264.79780 * 12 11 9 40 40 H 1.09002 * 110.75238 * 203.74833 * 13 12 11 41 41 H 1.08995 * 110.75610 * 80.37488 * 13 12 11 42 42 H 1.08999 * 109.47128 * 304.99822 * 16 14 9 43 43 H 1.09000 * 109.47394 * 65.00318 * 16 14 9 44 44 H 0.97005 * 119.99548 * 0.02562 * 17 16 14 45 45 H 0.96994 * 119.99800 * 179.97438 * 21 20 18 46 46 H 1.08997 * 115.54945 * 325.42535 * 27 26 5 47 47 H 1.09001 * 117.49899 * 0.02562 * 28 27 26 48 48 H 1.09002 * 117.50359 * 145.02359 * 28 27 26 49 49 H 1.08998 * 117.50010 * 214.97988 * 29 27 26 50 50 H 1.09002 * 117.49629 * 359.97148 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1454 1.1539 0.0000 4 6 3.4660 1.2004 0.0062 5 6 4.1855 -0.0002 -0.0002 6 6 5.6638 -0.0003 -0.0002 7 8 6.2716 -1.0485 0.0970 8 7 6.3378 1.1619 -0.1083 9 6 7.8027 1.1619 -0.1089 10 1 8.1760 0.3648 0.5341 11 6 8.3302 0.9735 -1.5421 12 6 9.1612 2.2300 -1.8745 13 6 9.5871 2.7807 -0.4909 14 6 8.3315 2.5263 0.3796 15 1 7.5867 3.3050 0.2154 16 6 8.7118 2.4543 1.8598 17 7 9.0969 3.7872 2.3304 18 6 9.4788 3.9697 3.6327 19 1 9.4965 3.1309 4.3128 20 6 9.8443 5.2325 4.0784 21 7 9.8232 6.2546 3.2493 22 14 10.3645 5.4815 5.8551 23 1 10.3025 4.1845 6.5755 24 1 11.7541 6.0038 5.8954 25 1 9.4511 6.4543 6.5067 26 6 3.4660 -1.2004 -0.0007 27 6 4.1856 -2.5245 -0.0008 28 6 3.3305 -3.7931 0.0045 29 6 4.0934 -3.3787 1.2652 30 7 2.1453 -1.1537 -0.0005 31 1 -0.3633 -0.0005 1.0277 32 1 -0.3633 0.8902 -0.5133 33 1 -0.3633 -0.8898 -0.5141 34 1 3.9817 2.1492 0.0113 35 1 5.8528 1.9984 -0.1857 36 1 8.9595 0.0851 -1.5946 37 1 7.4962 0.8825 -2.2380 38 1 10.0375 1.9627 -2.4649 39 1 8.5518 2.9604 -2.4069 40 1 9.8063 3.8469 -0.5503 41 1 10.4441 2.2301 -0.1031 42 1 7.8588 2.0977 2.4371 43 1 9.5491 1.7681 1.9870 44 1 9.0807 4.5406 1.7196 45 1 10.0782 7.1370 3.5609 46 1 5.1216 -2.5507 -0.5586 47 1 2.2475 -3.6701 0.0077 48 1 3.7041 -4.6543 -0.5495 49 1 4.9687 -3.9673 1.5400 50 1 3.5127 -2.9828 2.0983 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001496917748.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:03:26 Heat of formation + Delta-G solvation = 39.523470 kcal Electronic energy + Delta-G solvation = -29960.770998 eV Core-core repulsion = 25988.668225 eV Total energy + Delta-G solvation = -3972.102773 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.70985 -39.87664 -38.09633 -37.37801 -34.57329 -34.16390 -33.46341 -33.13207 -31.42849 -29.47424 -28.62179 -27.50374 -25.63132 -24.60066 -23.94427 -22.53058 -22.18079 -21.35452 -21.30447 -20.11870 -19.88092 -18.09659 -17.86639 -16.97893 -16.64034 -16.28515 -15.86141 -15.37183 -15.14392 -14.91224 -14.63127 -14.34191 -14.19351 -13.84866 -13.70741 -13.40769 -13.20494 -12.98758 -12.86671 -12.82435 -12.28451 -12.14181 -11.93461 -11.78644 -11.73618 -11.57967 -11.38647 -10.99432 -10.87763 -10.82270 -10.73400 -10.51369 -10.43672 -10.41726 -10.33606 -9.99337 -9.77082 -9.69197 -9.63241 -9.58405 -9.05726 -8.88945 -6.93384 -5.78392 -3.06615 0.13036 0.67839 2.64147 2.94817 3.32851 3.42311 3.46817 3.48520 3.50415 3.62352 3.73797 4.03007 4.40052 4.49770 4.56734 4.67884 4.76037 4.78477 4.81536 4.84565 4.92687 4.99351 5.14735 5.16313 5.41174 5.47515 5.49083 5.52037 5.52463 5.59154 5.61970 5.67996 5.72687 5.77531 5.86412 5.94718 5.97879 6.01276 6.04646 6.13505 6.17960 6.24906 6.48763 6.50384 6.52850 6.60165 6.74493 6.86317 7.34206 7.69767 7.69935 8.04153 8.40739 9.52259 10.09490 10.44510 11.44576 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.010975 B = 0.002564 C = 0.002390 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2550.622346 B =10918.345015 C =11710.288756 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C 0.339 3.661 3 N -0.525 5.525 4 C 0.191 3.809 5 C -0.246 4.246 6 C 0.570 3.430 7 O -0.524 6.524 8 N -0.712 5.712 9 C 0.147 3.853 10 H 0.097 0.903 11 C -0.131 4.131 12 C -0.125 4.125 13 C -0.110 4.110 14 C -0.102 4.102 15 H 0.079 0.921 16 C 0.161 3.839 17 N -0.731 5.731 18 C -0.237 4.237 19 H 0.070 0.930 20 C -0.014 4.014 21 N -0.934 5.934 22 Si 0.906 3.094 23 H -0.280 1.280 24 H -0.291 1.291 25 H -0.292 1.292 26 C 0.269 3.731 27 C -0.119 4.119 28 C -0.164 4.164 29 C -0.146 4.146 30 N -0.522 5.522 31 H 0.090 0.910 32 H 0.089 0.911 33 H 0.088 0.912 34 H 0.174 0.826 35 H 0.398 0.602 36 H 0.069 0.931 37 H 0.064 0.936 38 H 0.063 0.937 39 H 0.063 0.937 40 H 0.075 0.925 41 H 0.072 0.928 42 H 0.017 0.983 43 H 0.021 0.979 44 H 0.384 0.616 45 H 0.254 0.746 46 H 0.148 0.852 47 H 0.106 0.894 48 H 0.098 0.902 49 H 0.104 0.896 50 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.276 -15.499 -12.726 25.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.073 3.927 3 N -0.240 5.240 4 C 0.024 3.976 5 C -0.253 4.253 6 C 0.355 3.645 7 O -0.401 6.401 8 N -0.363 5.363 9 C 0.043 3.957 10 H 0.115 0.885 11 C -0.170 4.170 12 C -0.163 4.163 13 C -0.148 4.148 14 C -0.122 4.122 15 H 0.098 0.902 16 C 0.033 3.967 17 N -0.375 5.375 18 C -0.369 4.369 19 H 0.088 0.912 20 C -0.210 4.210 21 N -0.583 5.583 22 Si 0.737 3.263 23 H -0.206 1.206 24 H -0.219 1.219 25 H -0.219 1.219 26 C 0.122 3.878 27 C -0.138 4.138 28 C -0.201 4.201 29 C -0.184 4.184 30 N -0.237 5.237 31 H 0.108 0.892 32 H 0.108 0.892 33 H 0.106 0.894 34 H 0.191 0.809 35 H 0.233 0.767 36 H 0.088 0.912 37 H 0.082 0.918 38 H 0.082 0.918 39 H 0.082 0.918 40 H 0.094 0.906 41 H 0.090 0.910 42 H 0.035 0.965 43 H 0.039 0.961 44 H 0.217 0.783 45 H 0.064 0.936 46 H 0.166 0.834 47 H 0.124 0.876 48 H 0.116 0.884 49 H 0.122 0.878 50 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -15.805 -16.278 -12.480 25.894 hybrid contribution 1.015 1.166 0.834 1.757 sum -14.790 -15.112 -11.645 24.140 Atomic orbital electron populations 1.20643 0.85258 1.04472 1.04248 1.23509 0.98452 0.83229 0.87508 1.68299 1.09638 1.30069 1.15965 1.23515 0.89692 0.97696 0.86718 1.21557 0.96279 0.96028 1.11453 1.17689 0.85684 0.84361 0.76726 1.90729 1.69292 1.30699 1.49412 1.46100 1.07846 1.08449 1.73869 1.21773 0.77664 0.99431 0.96851 0.88545 1.22543 0.99732 0.98736 0.95943 1.22390 0.99300 0.96738 0.97868 1.22451 0.97145 1.01922 0.93283 1.22443 0.97874 0.94867 0.96988 0.90232 1.20681 0.96654 0.89478 0.89845 1.42325 1.80748 1.04245 1.10149 1.19271 1.36631 0.93753 0.87216 0.91222 1.24726 1.02563 0.95757 0.97963 1.69664 1.54969 0.99548 1.34074 0.86130 0.77907 0.77570 0.84689 1.20566 1.21857 1.21885 1.20985 0.88361 0.93827 0.84617 1.21297 1.01046 0.86150 1.05299 1.23034 0.99501 0.96704 1.00910 1.22888 1.02785 1.01573 0.91180 1.68097 1.09046 1.30114 1.16443 0.89171 0.89233 0.89359 0.80934 0.76678 0.91191 0.91771 0.91776 0.91837 0.90649 0.90973 0.96524 0.96072 0.78271 0.93592 0.83419 0.87585 0.88381 0.87804 0.89036 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.60 10.31 36.01 0.37 -0.23 16 2 C 0.34 3.62 7.64 -157.07 -1.20 2.42 16 3 N -0.53 -5.94 10.31 -10.39 -0.11 -6.05 16 4 C 0.19 2.03 10.80 -16.77 -0.18 1.85 16 5 C -0.25 -2.92 5.91 -104.69 -0.62 -3.53 16 6 C 0.57 7.31 7.75 -12.33 -0.10 7.22 16 7 O -0.52 -7.88 13.21 5.32 0.07 -7.81 16 8 N -0.71 -8.23 4.94 -53.67 -0.27 -8.49 16 9 C 0.15 1.90 2.81 -66.81 -0.19 1.71 16 10 H 0.10 1.42 7.26 -51.93 -0.38 1.04 16 11 C -0.13 -1.49 6.59 -25.61 -0.17 -1.66 16 12 C -0.13 -1.41 6.83 -25.07 -0.17 -1.58 16 13 C -0.11 -1.56 6.19 -24.74 -0.15 -1.71 16 14 C -0.10 -1.52 2.59 -88.96 -0.23 -1.75 16 15 H 0.08 1.16 7.74 -51.93 -0.40 0.76 16 16 C 0.16 3.15 5.54 -4.04 -0.02 3.13 16 17 N -0.73 -18.01 5.49 -59.91 -0.33 -18.34 16 18 C -0.24 -6.61 9.99 -15.06 -0.15 -6.76 16 19 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 20 C -0.01 -0.41 5.50 -17.43 -0.10 -0.51 16 21 N -0.93 -27.91 13.06 55.49 0.72 -27.18 16 22 Si 0.91 22.42 29.55 -169.99 -5.02 17.39 16 23 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 24 H -0.29 -7.24 7.11 56.52 0.40 -6.83 16 25 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 26 C 0.27 3.26 6.53 -81.82 -0.53 2.73 16 27 C -0.12 -1.34 4.75 -91.77 -0.44 -1.78 16 28 C -0.16 -1.50 10.05 -26.70 -0.27 -1.76 16 29 C -0.15 -1.47 10.24 -26.69 -0.27 -1.74 16 30 N -0.52 -6.03 9.34 -6.68 -0.06 -6.10 16 31 H 0.09 0.53 8.14 -51.93 -0.42 0.10 16 32 H 0.09 0.53 8.14 -51.93 -0.42 0.10 16 33 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.17 1.36 6.58 -52.49 -0.35 1.02 16 35 H 0.40 3.78 6.53 -40.82 -0.27 3.52 16 36 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 37 H 0.06 0.70 7.92 -51.93 -0.41 0.29 16 38 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.06 0.67 8.14 -51.92 -0.42 0.25 16 40 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 41 H 0.07 1.07 7.97 -51.93 -0.41 0.66 16 42 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 43 H 0.02 0.43 8.02 -51.93 -0.42 0.01 16 44 H 0.38 9.84 7.64 -40.82 -0.31 9.52 16 45 H 0.25 7.35 8.31 -40.82 -0.34 7.01 16 46 H 0.15 1.81 6.14 -51.93 -0.32 1.50 16 47 H 0.11 0.98 7.58 -51.93 -0.39 0.59 16 48 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 49 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 50 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 LS Contribution 406.31 15.07 6.12 6.12 Total: -1.00 -32.69 406.31 -11.14 -43.83 By element: Atomic # 1 Polarization: 18.44 SS G_CDS: -7.85 Total: 10.59 kcal Atomic # 6 Polarization: 0.45 SS G_CDS: -4.42 Total: -3.97 kcal Atomic # 7 Polarization: -66.12 SS G_CDS: -0.04 Total: -66.16 kcal Atomic # 8 Polarization: -7.88 SS G_CDS: 0.07 Total: -7.81 kcal Atomic # 14 Polarization: 22.42 SS G_CDS: -5.02 Total: 17.39 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -32.69 -11.14 -43.83 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001496917748.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.353 kcal (2) G-P(sol) polarization free energy of solvation -32.692 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.661 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.138 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.830 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.523 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds