Wall clock time and date at job start Wed Apr 1 2020 03:03:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.31878 * 118.95417 * 2 1 4 4 C 1.32138 * 120.96826 * 179.68499 * 3 2 1 5 5 C 1.39969 * 118.91992 * 0.61219 * 4 3 2 6 6 C 1.47831 * 120.94009 * 179.70278 * 5 4 3 7 7 O 1.21555 * 120.00140 * 174.39458 * 6 5 4 8 8 N 1.34780 * 119.99914 * 354.38144 * 6 5 4 9 9 C 1.46495 * 120.00307 * 180.02562 * 8 6 5 10 10 H 1.08998 * 110.01527 * 326.40046 * 9 8 6 11 11 C 1.53875 * 110.07060 * 87.81265 * 9 8 6 12 12 C 1.54265 * 106.59643 * 119.31246 * 11 9 8 13 13 C 1.54887 * 104.19806 * 23.60814 * 12 11 9 14 14 C 1.54266 * 110.03655 * 205.00546 * 9 8 6 15 15 H 1.08998 * 110.48368 * 335.87144 * 14 9 8 16 16 C 1.52997 * 110.48552 * 98.37775 * 14 9 8 17 17 N 1.46502 * 109.47266 * 185.00317 * 16 14 9 18 18 C 1.36929 * 120.00389 * 179.97438 * 17 16 14 19 19 H 1.08001 * 120.00155 * 0.02562 * 18 17 16 20 20 C 1.38815 * 120.00296 * 179.97438 * 18 17 16 21 21 N 1.31625 * 119.99711 * 0.02562 * 20 18 17 22 22 Si 1.86793 * 120.00128 * 179.97438 * 20 18 17 23 23 H 1.48496 * 109.47420 * 0.02562 * 22 20 18 24 24 H 1.48507 * 109.47088 * 120.00724 * 22 20 18 25 25 H 1.48497 * 109.47530 * 240.00324 * 22 20 18 26 26 C 1.39935 * 118.12096 * 359.42604 * 5 4 3 27 27 C 1.50698 * 120.53603 * 180.29387 * 26 5 4 28 28 C 1.52993 * 117.49775 * 179.75558 * 27 26 5 29 29 C 1.53003 * 117.49965 * 111.09541 * 27 26 5 30 30 N 1.31854 * 118.95257 * 180.02562 * 2 1 3 31 31 H 1.09006 * 109.46939 * 269.97139 * 1 2 3 32 32 H 1.08995 * 109.47156 * 29.96943 * 1 2 3 33 33 H 1.08997 * 109.47256 * 149.97832 * 1 2 3 34 34 H 1.07997 * 120.54227 * 180.31257 * 4 3 2 35 35 H 0.97005 * 119.99762 * 0.02562 * 8 6 5 36 36 H 1.09003 * 110.03058 * 238.59374 * 11 9 8 37 37 H 1.09001 * 110.03368 * 0.02562 * 11 9 8 38 38 H 1.09000 * 110.48584 * 142.28848 * 12 11 9 39 39 H 1.09007 * 110.48228 * 264.79780 * 12 11 9 40 40 H 1.09002 * 110.75238 * 203.74833 * 13 12 11 41 41 H 1.08995 * 110.75610 * 80.37488 * 13 12 11 42 42 H 1.08999 * 109.47128 * 304.99822 * 16 14 9 43 43 H 1.09000 * 109.47394 * 65.00318 * 16 14 9 44 44 H 0.97005 * 119.99548 * 0.02562 * 17 16 14 45 45 H 0.96994 * 119.99800 * 179.97438 * 21 20 18 46 46 H 1.08997 * 115.54945 * 325.42535 * 27 26 5 47 47 H 1.09001 * 117.49899 * 0.02562 * 28 27 26 48 48 H 1.09002 * 117.50359 * 145.02359 * 28 27 26 49 49 H 1.08998 * 117.50010 * 214.97988 * 29 27 26 50 50 H 1.09002 * 117.49629 * 359.97148 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1454 1.1539 0.0000 4 6 3.4660 1.2004 0.0062 5 6 4.1855 -0.0002 -0.0002 6 6 5.6638 -0.0003 -0.0002 7 8 6.2716 -1.0485 0.0970 8 7 6.3378 1.1619 -0.1083 9 6 7.8027 1.1619 -0.1089 10 1 8.1760 0.3648 0.5341 11 6 8.3302 0.9735 -1.5421 12 6 9.1612 2.2300 -1.8745 13 6 9.5871 2.7807 -0.4909 14 6 8.3315 2.5263 0.3796 15 1 7.5867 3.3050 0.2154 16 6 8.7118 2.4543 1.8598 17 7 9.0969 3.7872 2.3304 18 6 9.4788 3.9697 3.6327 19 1 9.4965 3.1309 4.3128 20 6 9.8443 5.2325 4.0784 21 7 9.8232 6.2546 3.2493 22 14 10.3645 5.4815 5.8551 23 1 10.3025 4.1845 6.5755 24 1 11.7541 6.0038 5.8954 25 1 9.4511 6.4543 6.5067 26 6 3.4660 -1.2004 -0.0007 27 6 4.1856 -2.5245 -0.0008 28 6 3.3305 -3.7931 0.0045 29 6 4.0934 -3.3787 1.2652 30 7 2.1453 -1.1537 -0.0005 31 1 -0.3633 -0.0005 1.0277 32 1 -0.3633 0.8902 -0.5133 33 1 -0.3633 -0.8898 -0.5141 34 1 3.9817 2.1492 0.0113 35 1 5.8528 1.9984 -0.1857 36 1 8.9595 0.0851 -1.5946 37 1 7.4962 0.8825 -2.2380 38 1 10.0375 1.9627 -2.4649 39 1 8.5518 2.9604 -2.4069 40 1 9.8063 3.8469 -0.5503 41 1 10.4441 2.2301 -0.1031 42 1 7.8588 2.0977 2.4371 43 1 9.5491 1.7681 1.9870 44 1 9.0807 4.5406 1.7196 45 1 10.0782 7.1370 3.5609 46 1 5.1216 -2.5507 -0.5586 47 1 2.2475 -3.6701 0.0077 48 1 3.7041 -4.6543 -0.5495 49 1 4.9687 -3.9673 1.5400 50 1 3.5127 -2.9828 2.0983 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001496917748.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:03:25 Heat of formation + Delta-G solvation = 19.927460 kcal Electronic energy + Delta-G solvation = -29961.620745 eV Core-core repulsion = 25988.668225 eV Total energy + Delta-G solvation = -3972.952520 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.56207 -40.90843 -39.19547 -38.22419 -36.32834 -35.17353 -34.38412 -33.97920 -33.29286 -30.32580 -30.10740 -28.48794 -26.56600 -26.22816 -24.89868 -23.87851 -23.27181 -22.31370 -22.15834 -21.28775 -20.94915 -19.35699 -18.96445 -18.50116 -17.52422 -17.35350 -16.71001 -16.60121 -16.22469 -16.02970 -15.99494 -15.52301 -15.16090 -15.09915 -15.02242 -14.77760 -14.52986 -14.26903 -13.59997 -13.48542 -13.36137 -13.17475 -13.07208 -12.88603 -12.81546 -12.74795 -12.51556 -12.47811 -12.34907 -12.13871 -11.95885 -11.86822 -11.63210 -11.60021 -11.56933 -11.41857 -11.24905 -10.95223 -10.70749 -10.50903 -10.43045 -10.06103 -9.00167 -7.96591 -5.24522 -0.72587 -0.16973 1.46328 1.46606 1.56647 1.69068 1.97046 2.48962 2.54487 2.69697 2.85424 2.93154 3.23200 3.36662 3.43506 3.54689 3.67233 3.73293 3.90672 3.96721 3.99562 4.06215 4.16055 4.17171 4.41423 4.48101 4.52119 4.55430 4.59733 4.66059 4.67606 4.73036 4.74447 4.81983 4.84700 4.97320 4.99616 5.01484 5.07333 5.14811 5.19532 5.25454 5.26980 5.30452 5.34450 5.46709 5.51212 5.58163 5.75968 6.26297 6.39581 6.86882 7.07132 7.33395 8.08265 8.33461 9.26759 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.010975 B = 0.002564 C = 0.002390 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2550.622346 B =10918.345015 C =11710.288756 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C 0.331 3.669 3 N -0.538 5.538 4 C 0.194 3.806 5 C -0.260 4.260 6 C 0.572 3.428 7 O -0.550 6.550 8 N -0.704 5.704 9 C 0.156 3.844 10 H 0.077 0.923 11 C -0.123 4.123 12 C -0.112 4.112 13 C -0.111 4.111 14 C -0.092 4.092 15 H 0.086 0.914 16 C 0.162 3.838 17 N -0.739 5.739 18 C -0.245 4.245 19 H 0.069 0.931 20 C -0.071 4.071 21 N -0.965 5.965 22 Si 0.969 3.031 23 H -0.270 1.270 24 H -0.292 1.292 25 H -0.292 1.292 26 C 0.258 3.742 27 C -0.136 4.136 28 C -0.145 4.145 29 C -0.148 4.148 30 N -0.530 5.530 31 H 0.102 0.898 32 H 0.100 0.900 33 H 0.100 0.900 34 H 0.197 0.803 35 H 0.409 0.591 36 H 0.071 0.929 37 H 0.074 0.926 38 H 0.078 0.922 39 H 0.076 0.924 40 H 0.060 0.940 41 H 0.060 0.940 42 H 0.010 0.990 43 H 0.015 0.985 44 H 0.377 0.623 45 H 0.252 0.748 46 H 0.136 0.864 47 H 0.106 0.894 48 H 0.116 0.884 49 H 0.109 0.891 50 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.396 -16.090 -13.394 26.592 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.066 3.934 3 N -0.253 5.253 4 C 0.027 3.973 5 C -0.268 4.268 6 C 0.358 3.642 7 O -0.429 6.429 8 N -0.356 5.356 9 C 0.051 3.949 10 H 0.095 0.905 11 C -0.161 4.161 12 C -0.150 4.150 13 C -0.149 4.149 14 C -0.111 4.111 15 H 0.104 0.896 16 C 0.035 3.965 17 N -0.382 5.382 18 C -0.377 4.377 19 H 0.087 0.913 20 C -0.264 4.264 21 N -0.616 5.616 22 Si 0.798 3.202 23 H -0.195 1.195 24 H -0.219 1.219 25 H -0.219 1.219 26 C 0.112 3.888 27 C -0.154 4.154 28 C -0.182 4.182 29 C -0.186 4.186 30 N -0.245 5.245 31 H 0.120 0.880 32 H 0.119 0.881 33 H 0.118 0.882 34 H 0.213 0.787 35 H 0.246 0.754 36 H 0.090 0.910 37 H 0.093 0.907 38 H 0.097 0.903 39 H 0.095 0.905 40 H 0.079 0.921 41 H 0.079 0.921 42 H 0.028 0.972 43 H 0.033 0.967 44 H 0.209 0.791 45 H 0.061 0.939 46 H 0.153 0.847 47 H 0.124 0.876 48 H 0.134 0.866 49 H 0.128 0.872 50 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -16.947 -16.892 -13.157 27.306 hybrid contribution 1.322 1.301 1.055 2.134 sum -15.624 -15.591 -12.101 25.173 Atomic orbital electron populations 1.20792 0.82704 1.05601 1.05278 1.24275 1.00044 0.82885 0.86193 1.68405 1.09819 1.30381 1.16669 1.23898 0.89720 0.98192 0.85466 1.21491 0.95598 0.96634 1.13037 1.17819 0.86105 0.84111 0.76157 1.90718 1.69876 1.31627 1.50681 1.45979 1.07296 1.08810 1.73480 1.21552 0.78414 0.97304 0.97634 0.90461 1.22474 1.00055 0.98928 0.94669 1.22321 0.99992 0.96603 0.96078 1.22402 0.96337 1.01015 0.95122 1.22287 0.98609 0.96317 0.93870 0.89609 1.20778 0.95856 0.86929 0.92892 1.42472 1.80640 1.05853 1.09209 1.19605 1.35783 0.93780 0.88553 0.91289 1.25492 1.03401 0.95647 1.01837 1.69799 1.56301 0.99739 1.35755 0.85137 0.77136 0.77631 0.80246 1.19467 1.21876 1.21895 1.21209 0.88885 0.94278 0.84476 1.21253 1.01209 0.86833 1.06146 1.23085 0.99213 0.96023 0.99863 1.22916 1.03225 1.01444 0.91045 1.68176 1.08698 1.30551 1.17078 0.87971 0.88141 0.88166 0.78652 0.75358 0.90988 0.90703 0.90322 0.90495 0.92080 0.92106 0.97236 0.96667 0.79058 0.93930 0.84689 0.87581 0.86592 0.87218 0.89650 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.00 10.31 71.24 0.73 -0.27 16 2 C 0.33 6.65 7.64 138.71 1.06 7.71 16 3 N -0.54 -11.48 10.31 -186.79 -1.93 -13.40 16 4 C 0.19 3.91 10.80 85.07 0.92 4.83 16 5 C -0.26 -6.05 5.91 -19.91 -0.12 -6.16 16 6 C 0.57 14.46 7.75 86.78 0.67 15.14 16 7 O -0.55 -16.64 13.21 -3.89 -0.05 -16.69 16 8 N -0.70 -15.61 4.94 -441.99 -2.18 -17.80 16 9 C 0.16 3.91 2.81 45.72 0.13 4.04 16 10 H 0.08 2.28 7.26 -2.39 -0.02 2.26 16 11 C -0.12 -2.57 6.59 31.32 0.21 -2.37 16 12 C -0.11 -2.29 6.83 31.67 0.22 -2.07 16 13 C -0.11 -3.06 6.19 31.88 0.20 -2.87 16 14 C -0.09 -2.67 2.59 -9.72 -0.03 -2.70 16 15 H 0.09 2.42 7.74 -2.39 -0.02 2.40 16 16 C 0.16 6.40 5.54 86.38 0.48 6.88 16 17 N -0.74 -36.87 5.49 -343.46 -1.89 -38.75 16 18 C -0.25 -13.75 9.99 84.04 0.84 -12.91 16 19 H 0.07 3.80 7.83 -2.91 -0.02 3.77 16 20 C -0.07 -4.08 5.50 84.86 0.47 -3.61 16 21 N -0.97 -58.22 13.06 21.65 0.28 -57.94 16 22 Si 0.97 46.21 29.55 68.60 2.03 48.24 16 23 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 24 H -0.29 -13.83 7.11 99.48 0.71 -13.13 16 25 H -0.29 -13.84 7.11 99.48 0.71 -13.13 16 26 C 0.26 6.18 6.53 42.92 0.28 6.46 16 27 C -0.14 -3.03 4.75 -11.54 -0.05 -3.09 16 28 C -0.14 -2.48 10.05 30.62 0.31 -2.18 16 29 C -0.15 -2.93 10.24 30.62 0.31 -2.62 16 30 N -0.53 -11.79 9.34 -175.03 -1.63 -13.43 16 31 H 0.10 0.98 8.14 -2.38 -0.02 0.96 16 32 H 0.10 0.97 8.14 -2.39 -0.02 0.95 16 33 H 0.10 0.94 8.14 -2.39 -0.02 0.92 16 34 H 0.20 2.75 6.58 -2.91 -0.02 2.73 16 35 H 0.41 7.17 6.53 -92.70 -0.60 6.56 16 36 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 37 H 0.07 1.46 7.92 -2.39 -0.02 1.44 16 38 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 39 H 0.08 1.41 8.14 -2.38 -0.02 1.39 16 40 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 41 H 0.06 1.81 7.97 -2.39 -0.02 1.79 16 42 H 0.01 0.40 8.14 -2.39 -0.02 0.38 16 43 H 0.02 0.63 8.02 -2.39 -0.02 0.61 16 44 H 0.38 19.63 7.64 -92.70 -0.71 18.92 16 45 H 0.25 14.69 8.31 -92.71 -0.77 13.92 16 46 H 0.14 3.37 6.14 -2.39 -0.01 3.36 16 47 H 0.11 1.83 7.58 -2.39 -0.02 1.82 16 48 H 0.12 1.55 8.14 -2.39 -0.02 1.53 16 49 H 0.11 1.99 8.14 -2.39 -0.02 1.97 16 50 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 Total: -1.00 -70.10 406.31 0.91 -69.19 By element: Atomic # 1 Polarization: 36.71 SS G_CDS: -0.34 Total: 36.37 kcal Atomic # 6 Polarization: -2.41 SS G_CDS: 6.62 Total: 4.21 kcal Atomic # 7 Polarization: -133.97 SS G_CDS: -7.35 Total: -141.32 kcal Atomic # 8 Polarization: -16.64 SS G_CDS: -0.05 Total: -16.69 kcal Atomic # 14 Polarization: 46.21 SS G_CDS: 2.03 Total: 48.24 kcal Total: -70.10 0.91 -69.19 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001496917748.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.119 kcal (2) G-P(sol) polarization free energy of solvation -70.098 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.906 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.191 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds