Wall clock time and date at job start Wed Apr 1 2020 03:58:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 N 1.28384 * 124.37390 * 2 1 4 4 C 1.31570 * 111.97170 * 179.97438 * 3 2 1 5 5 C 1.47384 * 126.82684 * 179.97438 * 4 3 2 6 6 O 1.21618 * 120.00189 * 180.02562 * 5 4 3 7 7 N 1.34780 * 120.00217 * 0.02630 * 5 4 3 8 8 C 1.46495 * 120.00190 * 180.02562 * 7 5 4 9 9 H 1.08994 * 109.47053 * 324.99815 * 8 7 5 10 10 C 1.53007 * 109.46951 * 204.99951 * 8 7 5 11 11 N 1.46504 * 109.46878 * 55.00192 * 10 8 7 12 12 C 1.36930 * 119.99826 * 180.02562 * 11 10 8 13 13 H 1.08005 * 120.00576 * 359.97438 * 12 11 10 14 14 C 1.38819 * 120.00157 * 179.97438 * 12 11 10 15 15 N 1.31615 * 120.00320 * 179.97438 * 14 12 11 16 16 Si 1.86798 * 119.99564 * 359.97438 * 14 12 11 17 17 H 1.48503 * 109.46985 * 90.00252 * 16 14 12 18 18 H 1.48505 * 109.46755 * 209.99749 * 16 14 12 19 19 H 1.48490 * 109.47331 * 329.99893 * 16 14 12 20 20 C 1.52998 * 109.47317 * 85.00458 * 8 7 5 21 21 C 1.52999 * 109.47357 * 59.99378 * 20 8 7 22 22 C 1.53000 * 109.47111 * 179.97438 * 20 8 7 23 23 C 1.53007 * 109.46696 * 299.99649 * 20 8 7 24 24 C 1.46887 * 106.35070 * 0.02562 * 4 3 2 25 25 C 1.39193 * 135.55998 * 179.97438 * 24 4 3 26 26 C 1.36724 * 119.50624 * 180.02562 * 25 24 4 27 27 C 1.38898 * 120.52536 * 0.02924 * 26 25 24 28 28 C 1.36686 * 120.89319 * 359.95696 * 27 26 25 29 29 C 1.37051 * 124.37446 * 179.97438 * 2 1 3 30 30 H 1.09001 * 109.46937 * 269.99794 * 1 2 3 31 31 H 1.08993 * 109.47188 * 30.00466 * 1 2 3 32 32 H 1.09001 * 109.47080 * 150.00507 * 1 2 3 33 33 H 0.97006 * 119.99333 * 0.02562 * 7 5 4 34 34 H 1.08992 * 109.47009 * 174.99986 * 10 8 7 35 35 H 1.09000 * 109.47368 * 295.00338 * 10 8 7 36 36 H 0.97000 * 120.00013 * 359.97438 * 11 10 8 37 37 H 0.96993 * 120.00274 * 179.97438 * 15 14 12 38 38 H 1.09004 * 109.46929 * 60.00276 * 21 20 8 39 39 H 1.09001 * 109.47003 * 180.02562 * 21 20 8 40 40 H 1.09002 * 109.47414 * 300.00312 * 21 20 8 41 41 H 1.08997 * 109.47344 * 60.00196 * 22 20 8 42 42 H 1.09001 * 109.47072 * 179.97438 * 22 20 8 43 43 H 1.08992 * 109.46837 * 299.99294 * 22 20 8 44 44 H 1.09002 * 109.47156 * 60.00252 * 23 20 8 45 45 H 1.08998 * 109.46886 * 179.97438 * 23 20 8 46 46 H 1.08994 * 109.47131 * 300.00310 * 23 20 8 47 47 H 1.07989 * 120.24774 * 0.04629 * 25 24 4 48 48 H 1.08002 * 119.73263 * 179.97438 * 26 25 24 49 49 H 1.07998 * 119.55089 * 179.97438 * 27 26 25 50 50 H 1.07996 * 120.10398 * 180.30601 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.1898 1.0596 0.0000 4 6 3.4748 0.7771 0.0005 5 6 4.5910 1.7395 0.0002 6 8 5.7393 1.3390 0.0003 7 7 4.3392 3.0636 -0.0003 8 6 5.4486 4.0203 -0.0012 9 1 6.2737 3.6203 0.5880 10 6 4.9813 5.3437 0.6081 11 7 4.4231 5.0979 1.9401 12 6 3.9373 6.1412 2.6821 13 1 3.9661 7.1454 2.2856 14 6 3.4078 5.9082 3.9440 15 7 2.9414 6.9111 4.6574 16 14 3.3574 4.1713 4.6295 17 1 4.6109 3.8977 5.3773 18 1 2.1954 4.0338 5.5441 19 1 3.2256 3.2019 3.5125 20 6 5.9162 4.2576 -1.4385 21 6 4.7579 4.8190 -2.2656 22 6 7.0745 5.2572 -1.4395 23 6 6.3835 2.9342 -2.0478 24 6 3.5760 -0.6883 0.0003 25 6 4.6167 -1.6127 0.0002 26 6 4.3299 -2.9495 -0.0005 27 6 3.0121 -3.3884 -0.0018 28 6 1.9757 -2.4973 -0.0014 29 6 2.2388 -1.1312 0.0005 30 1 -0.3633 0.0000 1.0277 31 1 -0.3633 0.8899 -0.5139 32 1 -0.3633 -0.8900 -0.5138 33 1 3.4232 3.3830 0.0000 34 1 5.8279 6.0253 0.6892 35 1 4.2171 5.7877 -0.0298 36 1 4.3968 4.1959 2.2961 37 1 2.5711 6.7483 5.5390 38 1 4.4250 5.7618 -1.8315 39 1 5.0910 4.9876 -3.2897 40 1 3.9325 4.1072 -2.2649 41 1 7.8998 4.8576 -0.8502 42 1 7.4080 5.4260 -2.4634 43 1 6.7412 6.1999 -1.0056 44 1 5.5580 2.2223 -2.0471 45 1 6.7162 3.1031 -3.0719 46 1 7.2086 2.5342 -1.4586 47 1 5.6429 -1.2764 0.0010 48 1 5.1346 -3.6699 -0.0011 49 1 2.8036 -4.4481 -0.0028 50 1 0.9558 -2.8526 0.0026 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001571637580.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:58:01 Heat of formation + Delta-G solvation = 68.426609 kcal Electronic energy + Delta-G solvation = -31227.798452 eV Core-core repulsion = 27256.949013 eV Total energy + Delta-G solvation = -3970.849439 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.58760 -39.96096 -37.94532 -37.37532 -34.56074 -33.81349 -33.12685 -31.28092 -30.73701 -30.27359 -28.37399 -27.49290 -27.12093 -26.46874 -24.14108 -23.50418 -22.54309 -22.07072 -21.23604 -19.97187 -18.64932 -18.16604 -17.49798 -17.23472 -16.48238 -16.05474 -15.76447 -15.51923 -15.41564 -14.58192 -14.32443 -14.25846 -14.06644 -13.82008 -13.68177 -13.51077 -13.19334 -13.04976 -13.01395 -12.75776 -12.26461 -12.15718 -12.13418 -11.95687 -11.82340 -11.51806 -11.38337 -11.35188 -11.19605 -10.99696 -10.84011 -10.71272 -10.53873 -10.29272 -10.09724 -9.95965 -9.85361 -9.59536 -8.92830 -8.89651 -8.69048 -8.11947 -7.22636 -5.76917 -3.12041 0.70873 1.20278 1.85735 2.19099 3.29718 3.35088 3.39097 3.44424 3.46905 3.70721 4.10517 4.24655 4.60291 4.64471 4.77464 4.79085 4.85711 4.86427 4.98371 5.03772 5.11574 5.15678 5.21298 5.36804 5.47128 5.52353 5.52639 5.65611 5.75307 5.77000 5.83743 5.89931 5.91094 6.04010 6.06228 6.12158 6.15571 6.26877 6.30344 6.34794 6.39769 6.42781 6.48161 6.53294 6.60311 6.69961 6.72233 6.89133 7.61232 7.88925 7.99037 8.40721 8.42830 9.21337 9.94022 10.13585 11.41397 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.008727 B = 0.004288 C = 0.003317 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3207.735402 B = 6528.663579 C = 8438.476654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.093 3.907 2 N -0.318 5.318 3 N -0.204 5.204 4 C 0.003 3.997 5 C 0.605 3.395 6 O -0.531 6.531 7 N -0.697 5.697 8 C 0.145 3.855 9 H 0.090 0.910 10 C 0.146 3.854 11 N -0.755 5.755 12 C -0.243 4.243 13 H 0.091 0.909 14 C 0.008 3.992 15 N -0.933 5.933 16 Si 0.880 3.120 17 H -0.284 1.284 18 H -0.292 1.292 19 H -0.277 1.277 20 C -0.075 4.075 21 C -0.143 4.143 22 C -0.141 4.141 23 C -0.130 4.130 24 C -0.108 4.108 25 C -0.040 4.040 26 C -0.145 4.145 27 C -0.086 4.086 28 C -0.121 4.121 29 C 0.063 3.937 30 H 0.082 0.918 31 H 0.098 0.902 32 H 0.091 0.909 33 H 0.409 0.591 34 H 0.046 0.954 35 H 0.037 0.963 36 H 0.362 0.638 37 H 0.259 0.741 38 H 0.064 0.936 39 H 0.050 0.950 40 H 0.052 0.948 41 H 0.056 0.944 42 H 0.053 0.947 43 H 0.064 0.936 44 H 0.051 0.949 45 H 0.042 0.958 46 H 0.062 0.938 47 H 0.139 0.861 48 H 0.129 0.871 49 H 0.129 0.871 50 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.560 -18.797 -15.553 24.447 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 N -0.111 5.111 3 N -0.033 5.033 4 C -0.168 4.168 5 C 0.389 3.611 6 O -0.406 6.406 7 N -0.348 5.348 8 C 0.040 3.960 9 H 0.108 0.892 10 C 0.019 3.981 11 N -0.401 5.401 12 C -0.373 4.373 13 H 0.109 0.891 14 C -0.188 4.188 15 N -0.581 5.581 16 Si 0.710 3.290 17 H -0.211 1.211 18 H -0.218 1.218 19 H -0.203 1.203 20 C -0.077 4.077 21 C -0.200 4.200 22 C -0.199 4.199 23 C -0.188 4.188 24 C -0.116 4.116 25 C -0.060 4.060 26 C -0.164 4.164 27 C -0.107 4.107 28 C -0.142 4.142 29 C -0.049 4.049 30 H 0.101 0.899 31 H 0.116 0.884 32 H 0.110 0.890 33 H 0.245 0.755 34 H 0.064 0.936 35 H 0.055 0.945 36 H 0.195 0.805 37 H 0.069 0.931 38 H 0.083 0.917 39 H 0.069 0.931 40 H 0.071 0.929 41 H 0.075 0.925 42 H 0.072 0.928 43 H 0.083 0.917 44 H 0.070 0.930 45 H 0.061 0.939 46 H 0.081 0.919 47 H 0.157 0.843 48 H 0.147 0.853 49 H 0.147 0.853 50 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -1.728 -17.907 -15.474 23.730 hybrid contribution -0.366 -1.692 0.756 1.888 sum -2.094 -19.599 -14.718 24.599 Atomic orbital electron populations 1.22105 0.73041 1.05193 1.04399 1.45161 1.07209 1.00877 1.57843 1.72942 1.03931 1.13740 1.12693 1.22861 0.90354 0.92355 1.11187 1.16564 0.86247 0.81573 0.76677 1.90775 1.20223 1.78905 1.50734 1.45854 1.11208 1.04706 1.72993 1.21418 0.89452 0.89635 0.95495 0.89214 1.21091 0.97234 0.92856 0.86945 1.42718 1.74884 1.06969 1.15523 1.19041 1.32188 0.89182 0.96842 0.89086 1.24619 1.00796 0.96483 0.96871 1.69691 1.46650 1.29457 1.12336 0.86619 0.77425 0.86027 0.78928 1.21068 1.21820 1.20345 1.20890 0.95869 0.96187 0.94750 1.21926 0.97712 1.01283 0.99079 1.21891 0.97434 0.99031 1.01516 1.21893 1.01648 0.95938 0.99271 1.19450 0.93014 0.91867 1.07247 1.20422 0.98911 0.91569 0.95134 1.20828 0.96715 0.95421 1.03483 1.20711 0.92259 0.99301 0.98397 1.19731 1.00034 0.88411 1.06011 1.19189 0.90651 0.90068 1.04985 0.89941 0.88353 0.89018 0.75482 0.93644 0.94496 0.80453 0.93088 0.91744 0.93091 0.92891 0.92497 0.92787 0.91742 0.92997 0.93864 0.91888 0.84332 0.85347 0.85272 0.85687 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.71 11.24 59.85 0.67 1.39 16 2 N -0.32 -4.05 3.74 -65.50 -0.24 -4.30 16 3 N -0.20 -3.16 11.52 34.46 0.40 -2.77 16 4 C 0.00 0.05 7.32 -80.76 -0.59 -0.54 16 5 C 0.61 10.48 6.17 -12.54 -0.08 10.40 16 6 O -0.53 -9.77 13.52 5.26 0.07 -9.70 16 7 N -0.70 -11.65 3.64 -54.89 -0.20 -11.85 16 8 C 0.14 2.38 1.69 -67.93 -0.11 2.26 16 9 H 0.09 1.62 7.58 -51.93 -0.39 1.23 16 10 C 0.15 2.76 5.10 -4.04 -0.02 2.74 16 11 N -0.75 -18.00 5.24 -59.90 -0.31 -18.32 16 12 C -0.24 -6.87 10.47 -15.06 -0.16 -7.03 16 13 H 0.09 2.73 8.06 -52.48 -0.42 2.30 16 14 C 0.01 0.24 5.50 -17.43 -0.10 0.15 16 15 N -0.93 -29.50 13.97 55.49 0.78 -28.73 16 16 Si 0.88 22.98 27.73 -169.99 -4.71 18.27 16 17 H -0.28 -7.46 7.11 56.52 0.40 -7.05 16 18 H -0.29 -7.66 7.11 56.52 0.40 -7.26 16 19 H -0.28 -7.02 6.52 56.52 0.37 -6.65 16 20 C -0.08 -1.03 0.62 -154.51 -0.10 -1.12 16 21 C -0.14 -1.81 7.97 37.16 0.30 -1.51 16 22 C -0.14 -1.74 8.12 37.16 0.30 -1.44 16 23 C -0.13 -1.80 7.00 37.16 0.26 -1.54 16 24 C -0.11 -1.62 6.34 -105.05 -0.67 -2.28 16 25 C -0.04 -0.52 9.87 -39.77 -0.39 -0.91 16 26 C -0.15 -1.45 9.98 -39.88 -0.40 -1.84 16 27 C -0.09 -0.75 9.96 -39.90 -0.40 -1.15 16 28 C -0.12 -1.16 9.94 -39.81 -0.40 -1.56 16 29 C 0.06 0.80 6.85 -84.21 -0.58 0.23 16 30 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.10 0.68 8.14 -51.93 -0.42 0.25 16 32 H 0.09 0.43 8.09 -51.93 -0.42 0.01 16 33 H 0.41 6.89 8.34 -40.82 -0.34 6.55 16 34 H 0.05 0.86 6.71 -51.93 -0.35 0.51 16 35 H 0.04 0.69 6.17 -51.93 -0.32 0.37 16 36 H 0.36 8.80 5.20 -40.82 -0.21 8.59 16 37 H 0.26 7.82 8.31 -40.82 -0.34 7.49 16 38 H 0.06 0.84 6.32 -51.93 -0.33 0.51 16 39 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.05 0.69 7.60 -51.93 -0.39 0.29 16 41 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 42 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 43 H 0.06 0.81 6.54 -51.93 -0.34 0.47 16 44 H 0.05 0.78 5.78 -51.93 -0.30 0.48 16 45 H 0.04 0.53 8.14 -51.93 -0.42 0.10 16 46 H 0.06 0.93 7.53 -51.93 -0.39 0.54 16 47 H 0.14 1.81 7.65 -52.49 -0.40 1.41 16 48 H 0.13 0.95 8.06 -52.49 -0.42 0.52 16 49 H 0.13 0.73 8.06 -52.49 -0.42 0.31 16 50 H 0.13 0.83 8.06 -52.49 -0.42 0.40 16 LS Contribution 397.13 15.07 5.98 5.98 Total: -1.00 -34.76 397.13 -8.28 -43.04 By element: Atomic # 1 Polarization: 19.72 SS G_CDS: -7.59 Total: 12.13 kcal Atomic # 6 Polarization: -1.32 SS G_CDS: -2.45 Total: -3.77 kcal Atomic # 7 Polarization: -66.36 SS G_CDS: 0.41 Total: -65.95 kcal Atomic # 8 Polarization: -9.77 SS G_CDS: 0.07 Total: -9.70 kcal Atomic # 14 Polarization: 22.98 SS G_CDS: -4.71 Total: 18.27 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -34.76 -8.28 -43.04 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001571637580.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.469 kcal (2) G-P(sol) polarization free energy of solvation -34.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.707 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.042 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.427 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds