Wall clock time and date at job start Wed Apr 1 2020 03:58:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 N 1.28384 * 124.37390 * 2 1 4 4 C 1.31570 * 111.97170 * 179.97438 * 3 2 1 5 5 C 1.47384 * 126.82684 * 179.97438 * 4 3 2 6 6 O 1.21618 * 120.00189 * 180.02562 * 5 4 3 7 7 N 1.34780 * 120.00217 * 0.02630 * 5 4 3 8 8 C 1.46495 * 120.00190 * 180.02562 * 7 5 4 9 9 H 1.08994 * 109.47053 * 324.99815 * 8 7 5 10 10 C 1.53007 * 109.46951 * 204.99951 * 8 7 5 11 11 N 1.46504 * 109.46878 * 55.00192 * 10 8 7 12 12 C 1.36930 * 119.99826 * 180.02562 * 11 10 8 13 13 H 1.08005 * 120.00576 * 359.97438 * 12 11 10 14 14 C 1.38819 * 120.00157 * 179.97438 * 12 11 10 15 15 N 1.31615 * 120.00320 * 179.97438 * 14 12 11 16 16 Si 1.86798 * 119.99564 * 359.97438 * 14 12 11 17 17 H 1.48503 * 109.46985 * 90.00252 * 16 14 12 18 18 H 1.48505 * 109.46755 * 209.99749 * 16 14 12 19 19 H 1.48490 * 109.47331 * 329.99893 * 16 14 12 20 20 C 1.52998 * 109.47317 * 85.00458 * 8 7 5 21 21 C 1.52999 * 109.47357 * 59.99378 * 20 8 7 22 22 C 1.53000 * 109.47111 * 179.97438 * 20 8 7 23 23 C 1.53007 * 109.46696 * 299.99649 * 20 8 7 24 24 C 1.46887 * 106.35070 * 0.02562 * 4 3 2 25 25 C 1.39193 * 135.55998 * 179.97438 * 24 4 3 26 26 C 1.36724 * 119.50624 * 180.02562 * 25 24 4 27 27 C 1.38898 * 120.52536 * 0.02924 * 26 25 24 28 28 C 1.36686 * 120.89319 * 359.95696 * 27 26 25 29 29 C 1.37051 * 124.37446 * 179.97438 * 2 1 3 30 30 H 1.09001 * 109.46937 * 269.99794 * 1 2 3 31 31 H 1.08993 * 109.47188 * 30.00466 * 1 2 3 32 32 H 1.09001 * 109.47080 * 150.00507 * 1 2 3 33 33 H 0.97006 * 119.99333 * 0.02562 * 7 5 4 34 34 H 1.08992 * 109.47009 * 174.99986 * 10 8 7 35 35 H 1.09000 * 109.47368 * 295.00338 * 10 8 7 36 36 H 0.97000 * 120.00013 * 359.97438 * 11 10 8 37 37 H 0.96993 * 120.00274 * 179.97438 * 15 14 12 38 38 H 1.09004 * 109.46929 * 60.00276 * 21 20 8 39 39 H 1.09001 * 109.47003 * 180.02562 * 21 20 8 40 40 H 1.09002 * 109.47414 * 300.00312 * 21 20 8 41 41 H 1.08997 * 109.47344 * 60.00196 * 22 20 8 42 42 H 1.09001 * 109.47072 * 179.97438 * 22 20 8 43 43 H 1.08992 * 109.46837 * 299.99294 * 22 20 8 44 44 H 1.09002 * 109.47156 * 60.00252 * 23 20 8 45 45 H 1.08998 * 109.46886 * 179.97438 * 23 20 8 46 46 H 1.08994 * 109.47131 * 300.00310 * 23 20 8 47 47 H 1.07989 * 120.24774 * 0.04629 * 25 24 4 48 48 H 1.08002 * 119.73263 * 179.97438 * 26 25 24 49 49 H 1.07998 * 119.55089 * 179.97438 * 27 26 25 50 50 H 1.07996 * 120.10398 * 180.30601 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.1898 1.0596 0.0000 4 6 3.4748 0.7771 0.0005 5 6 4.5910 1.7395 0.0002 6 8 5.7393 1.3390 0.0003 7 7 4.3392 3.0636 -0.0003 8 6 5.4486 4.0203 -0.0012 9 1 6.2737 3.6203 0.5880 10 6 4.9813 5.3437 0.6081 11 7 4.4231 5.0979 1.9401 12 6 3.9373 6.1412 2.6821 13 1 3.9661 7.1454 2.2856 14 6 3.4078 5.9082 3.9440 15 7 2.9414 6.9111 4.6574 16 14 3.3574 4.1713 4.6295 17 1 4.6109 3.8977 5.3773 18 1 2.1954 4.0338 5.5441 19 1 3.2256 3.2019 3.5125 20 6 5.9162 4.2576 -1.4385 21 6 4.7579 4.8190 -2.2656 22 6 7.0745 5.2572 -1.4395 23 6 6.3835 2.9342 -2.0478 24 6 3.5760 -0.6883 0.0003 25 6 4.6167 -1.6127 0.0002 26 6 4.3299 -2.9495 -0.0005 27 6 3.0121 -3.3884 -0.0018 28 6 1.9757 -2.4973 -0.0014 29 6 2.2388 -1.1312 0.0005 30 1 -0.3633 0.0000 1.0277 31 1 -0.3633 0.8899 -0.5139 32 1 -0.3633 -0.8900 -0.5138 33 1 3.4232 3.3830 0.0000 34 1 5.8279 6.0253 0.6892 35 1 4.2171 5.7877 -0.0298 36 1 4.3968 4.1959 2.2961 37 1 2.5711 6.7483 5.5390 38 1 4.4250 5.7618 -1.8315 39 1 5.0910 4.9876 -3.2897 40 1 3.9325 4.1072 -2.2649 41 1 7.8998 4.8576 -0.8502 42 1 7.4080 5.4260 -2.4634 43 1 6.7412 6.1999 -1.0056 44 1 5.5580 2.2223 -2.0471 45 1 6.7162 3.1031 -3.0719 46 1 7.2086 2.5342 -1.4586 47 1 5.6429 -1.2764 0.0010 48 1 5.1346 -3.6699 -0.0011 49 1 2.8036 -4.4481 -0.0028 50 1 0.9558 -2.8526 0.0026 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001571637580.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:58:00 Heat of formation + Delta-G solvation = 45.623559 kcal Electronic energy + Delta-G solvation = -31228.787267 eV Core-core repulsion = 27256.949013 eV Total energy + Delta-G solvation = -3971.838253 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -43.53867 -41.25911 -38.77248 -38.67570 -36.36579 -34.91307 -34.36424 -33.33054 -31.53984 -31.15951 -29.89350 -28.50968 -28.16642 -27.57755 -25.60816 -24.73852 -23.64418 -23.08903 -22.78496 -21.11315 -20.14210 -19.57185 -18.86754 -18.21131 -17.46100 -17.12615 -17.09594 -16.88792 -16.31942 -16.20336 -15.91432 -15.22184 -15.12613 -15.08986 -14.85524 -14.70109 -14.63445 -14.49214 -13.94903 -13.81767 -13.60357 -13.37546 -13.17895 -13.02384 -12.94174 -12.88081 -12.82767 -12.56401 -12.40735 -12.22042 -12.19969 -12.07865 -11.97826 -11.86954 -11.65821 -11.31964 -11.18200 -11.01913 -10.99457 -10.01465 -9.80462 -9.32505 -9.00398 -8.07173 -5.38680 -0.23496 0.34458 0.83435 1.28926 1.31121 1.36681 1.37174 2.07318 2.21128 2.40583 2.78940 3.16069 3.25612 3.39093 3.44179 3.67249 3.80369 3.99923 4.01973 4.05034 4.11999 4.27516 4.29435 4.34366 4.39309 4.42083 4.48369 4.59376 4.60399 4.75156 4.80844 4.84386 4.85409 4.95582 4.99363 5.05078 5.07391 5.11475 5.20110 5.23290 5.29603 5.39104 5.43779 5.53260 5.54421 5.58881 5.69861 5.73762 5.95896 6.17172 6.38915 6.75900 7.02737 7.11693 7.79123 7.96867 9.14416 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.008727 B = 0.004288 C = 0.003317 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3207.735402 B = 6528.663579 C = 8438.476654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -0.312 5.312 3 N -0.219 5.219 4 C -0.038 4.038 5 C 0.604 3.396 6 O -0.552 6.552 7 N -0.697 5.697 8 C 0.153 3.847 9 H 0.071 0.929 10 C 0.147 3.853 11 N -0.758 5.758 12 C -0.225 4.225 13 H 0.068 0.932 14 C -0.051 4.051 15 N -0.978 5.978 16 Si 0.941 3.059 17 H -0.284 1.284 18 H -0.291 1.291 19 H -0.269 1.269 20 C -0.069 4.069 21 C -0.138 4.138 22 C -0.139 4.139 23 C -0.120 4.120 24 C -0.137 4.137 25 C -0.074 4.074 26 C -0.132 4.132 27 C -0.081 4.081 28 C -0.113 4.113 29 C 0.048 3.952 30 H 0.091 0.909 31 H 0.102 0.898 32 H 0.127 0.873 33 H 0.408 0.592 34 H 0.052 0.948 35 H 0.047 0.953 36 H 0.361 0.639 37 H 0.258 0.742 38 H 0.060 0.940 39 H 0.071 0.929 40 H 0.045 0.955 41 H 0.053 0.947 42 H 0.075 0.925 43 H 0.061 0.939 44 H 0.034 0.966 45 H 0.064 0.936 46 H 0.047 0.953 47 H 0.122 0.878 48 H 0.155 0.845 49 H 0.172 0.828 50 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.566 -21.930 -17.062 27.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.106 5.106 3 N -0.050 5.050 4 C -0.207 4.207 5 C 0.390 3.610 6 O -0.429 6.429 7 N -0.347 5.347 8 C 0.048 3.952 9 H 0.089 0.911 10 C 0.021 3.979 11 N -0.404 5.404 12 C -0.356 4.356 13 H 0.086 0.914 14 C -0.243 4.243 15 N -0.629 5.629 16 Si 0.771 3.229 17 H -0.211 1.211 18 H -0.218 1.218 19 H -0.195 1.195 20 C -0.071 4.071 21 C -0.195 4.195 22 C -0.197 4.197 23 C -0.178 4.178 24 C -0.145 4.145 25 C -0.094 4.094 26 C -0.151 4.151 27 C -0.101 4.101 28 C -0.133 4.133 29 C -0.064 4.064 30 H 0.110 0.890 31 H 0.121 0.879 32 H 0.146 0.854 33 H 0.243 0.757 34 H 0.069 0.931 35 H 0.065 0.935 36 H 0.194 0.806 37 H 0.067 0.933 38 H 0.079 0.921 39 H 0.090 0.910 40 H 0.064 0.936 41 H 0.072 0.928 42 H 0.094 0.906 43 H 0.080 0.920 44 H 0.054 0.946 45 H 0.082 0.918 46 H 0.066 0.934 47 H 0.140 0.860 48 H 0.173 0.827 49 H 0.189 0.811 50 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -2.716 -21.054 -17.028 27.214 hybrid contribution -0.090 -0.791 1.139 1.390 sum -2.807 -21.845 -15.889 27.158 Atomic orbital electron populations 1.22555 0.70374 1.07295 1.05633 1.45630 1.08609 1.00348 1.56002 1.72845 1.03928 1.15282 1.12984 1.22755 0.90508 0.93212 1.14190 1.16760 0.86497 0.81712 0.76070 1.90741 1.21130 1.79230 1.51814 1.45827 1.10984 1.04745 1.73179 1.21301 0.88732 0.88079 0.97056 0.91112 1.21251 0.97328 0.94539 0.84827 1.42756 1.74826 1.05789 1.16982 1.19067 1.30448 0.89293 0.96834 0.91359 1.25252 1.01656 0.99869 0.97572 1.69830 1.48660 1.31517 1.12850 0.85619 0.77118 0.81942 0.78263 1.21103 1.21787 1.19462 1.20857 0.96804 0.96669 0.92773 1.21884 0.96993 1.00684 0.99981 1.21884 0.96666 0.98221 1.02891 1.21774 1.00443 0.95386 1.00165 1.19739 0.94873 0.91368 1.08482 1.20470 0.97983 0.92964 0.98005 1.21225 0.98579 0.94413 1.00852 1.21227 0.91179 1.01298 0.96436 1.20256 1.02315 0.86776 1.03996 1.19578 0.89754 0.91323 1.05767 0.89048 0.87889 0.85433 0.75671 0.93067 0.93497 0.80643 0.93300 0.92079 0.91029 0.93566 0.92814 0.90585 0.92031 0.94642 0.91751 0.93369 0.86014 0.82707 0.81097 0.81919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.03 11.24 127.77 1.44 2.47 16 2 N -0.31 -7.58 3.74 -361.15 -1.35 -8.93 16 3 N -0.22 -6.87 11.52 -44.88 -0.52 -7.39 16 4 C -0.04 -1.31 7.32 43.86 0.32 -0.99 16 5 C 0.60 21.92 6.17 86.65 0.53 22.45 16 6 O -0.55 -21.50 13.52 -4.09 -0.06 -21.55 16 7 N -0.70 -24.04 3.64 -445.84 -1.62 -25.66 16 8 C 0.15 5.12 1.69 44.99 0.08 5.19 16 9 H 0.07 2.65 7.58 -2.39 -0.02 2.63 16 10 C 0.15 5.57 5.10 86.38 0.44 6.01 16 11 N -0.76 -36.50 5.24 -343.44 -1.80 -38.30 16 12 C -0.23 -12.97 10.47 84.04 0.88 -12.08 16 13 H 0.07 4.19 8.06 -2.91 -0.02 4.17 16 14 C -0.05 -3.09 5.50 84.86 0.47 -2.63 16 15 N -0.98 -63.13 13.97 21.65 0.30 -62.83 16 16 Si 0.94 48.41 27.73 68.60 1.90 50.32 16 17 H -0.28 -14.54 7.11 99.48 0.71 -13.84 16 18 H -0.29 -14.88 7.11 99.48 0.71 -14.17 16 19 H -0.27 -13.30 6.52 99.48 0.65 -12.65 16 20 C -0.07 -1.86 0.62 -52.18 -0.03 -1.89 16 21 C -0.14 -3.35 7.97 71.98 0.57 -2.77 16 22 C -0.14 -3.27 8.12 71.98 0.58 -2.68 16 23 C -0.12 -3.31 7.00 71.98 0.50 -2.80 16 24 C -0.14 -4.15 6.34 -20.14 -0.13 -4.28 16 25 C -0.07 -1.94 9.87 22.14 0.22 -1.72 16 26 C -0.13 -2.32 9.98 22.07 0.22 -2.10 16 27 C -0.08 -1.08 9.96 22.06 0.22 -0.86 16 28 C -0.11 -1.74 9.94 22.12 0.22 -1.52 16 29 C 0.05 1.14 6.85 39.18 0.27 1.41 16 30 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 31 H 0.10 1.24 8.14 -2.39 -0.02 1.22 16 32 H 0.13 0.70 8.09 -2.39 -0.02 0.68 16 33 H 0.41 14.16 8.34 -92.70 -0.77 13.39 16 34 H 0.05 1.93 6.71 -2.39 -0.02 1.91 16 35 H 0.05 1.73 6.17 -2.39 -0.01 1.72 16 36 H 0.36 17.64 5.20 -92.71 -0.48 17.16 16 37 H 0.26 15.92 8.31 -92.71 -0.77 15.15 16 38 H 0.06 1.52 6.32 -2.38 -0.02 1.50 16 39 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 40 H 0.05 1.18 7.60 -2.39 -0.02 1.16 16 41 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 42 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 43 H 0.06 1.48 6.54 -2.39 -0.02 1.47 16 44 H 0.03 1.09 5.78 -2.39 -0.01 1.07 16 45 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 46 H 0.05 1.45 7.53 -2.39 -0.02 1.44 16 47 H 0.12 3.43 7.65 -2.92 -0.02 3.41 16 48 H 0.16 1.81 8.06 -2.91 -0.02 1.78 16 49 H 0.17 0.89 8.06 -2.91 -0.02 0.87 16 50 H 0.16 1.23 8.06 -2.91 -0.02 1.21 16 Total: -1.00 -78.54 397.13 3.32 -75.22 By element: Atomic # 1 Polarization: 38.26 SS G_CDS: -0.34 Total: 37.92 kcal Atomic # 6 Polarization: -5.60 SS G_CDS: 6.80 Total: 1.20 kcal Atomic # 7 Polarization: -138.12 SS G_CDS: -4.99 Total: -143.10 kcal Atomic # 8 Polarization: -21.50 SS G_CDS: -0.06 Total: -21.55 kcal Atomic # 14 Polarization: 48.41 SS G_CDS: 1.90 Total: 50.32 kcal Total: -78.54 3.32 -75.22 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001571637580.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.841 kcal (2) G-P(sol) polarization free energy of solvation -78.539 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.302 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.321 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.218 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.624 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds