Wall clock time and date at job start Wed Apr 1 2020 03:08:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.31800 * 119.12374 * 2 1 4 4 C 1.32328 * 120.82018 * 179.97438 * 3 2 1 5 5 C 1.38620 * 119.09740 * 359.74976 * 4 3 2 6 6 C 1.38579 * 118.40121 * 0.47018 * 5 4 3 7 7 C 1.50698 * 120.44855 * 179.80513 * 6 5 4 8 8 C 1.53003 * 109.47240 * 124.71742 * 7 6 5 9 9 C 1.50698 * 109.47240 * 179.97438 * 8 7 6 10 10 O 1.21286 * 119.99720 * 0.02562 * 9 8 7 11 11 N 1.34774 * 120.00209 * 180.02562 * 9 8 7 12 12 C 1.46497 * 120.00028 * 180.02562 * 11 9 8 13 13 H 1.08997 * 115.55454 * 350.68106 * 12 11 9 14 14 C 1.53030 * 117.50161 * 136.41794 * 12 11 9 15 15 C 1.52826 * 117.50073 * 205.00251 * 12 11 9 16 16 C 1.53173 * 117.71429 * 144.89864 * 15 12 11 17 17 C 1.53353 * 108.76887 * 158.88751 * 16 15 12 18 18 N 1.46842 * 108.81622 * 51.30836 * 17 16 15 19 19 C 1.36936 * 120.38671 * 123.07913 * 18 17 16 20 20 H 1.07992 * 120.00073 * 208.91669 * 19 18 17 21 21 C 1.38813 * 119.99790 * 28.91905 * 19 18 17 22 22 N 1.31616 * 120.00097 * 17.83495 * 21 19 18 23 23 Si 1.86797 * 119.99791 * 197.83702 * 21 19 18 24 24 H 1.48500 * 109.47165 * 59.99988 * 23 21 19 25 25 H 1.48502 * 109.47088 * 180.02562 * 23 21 19 26 26 H 1.48505 * 109.47098 * 299.99845 * 23 21 19 27 27 C 1.46851 * 119.23035 * 303.09707 * 18 17 16 28 28 C 1.53182 * 117.71039 * 0.13249 * 15 12 11 29 29 N 1.31777 * 119.12066 * 179.97438 * 2 1 3 30 30 H 1.08998 * 109.47250 * 270.02856 * 1 2 3 31 31 H 1.09005 * 109.47221 * 30.02574 * 1 2 3 32 32 H 1.08999 * 109.47225 * 150.01944 * 1 2 3 33 33 H 1.07995 * 120.44920 * 180.02562 * 4 3 2 34 34 H 1.08004 * 120.79823 * 180.25000 * 5 4 3 35 35 H 1.09001 * 109.46797 * 4.72014 * 7 6 5 36 36 H 1.08999 * 109.47085 * 244.71927 * 7 6 5 37 37 H 1.08999 * 109.47232 * 300.00094 * 8 7 6 38 38 H 1.09000 * 109.46547 * 60.00131 * 8 7 6 39 39 H 0.97002 * 119.99675 * 359.97438 * 11 9 8 40 40 H 1.09006 * 117.49829 * 214.95213 * 14 12 11 41 41 H 1.08994 * 117.50687 * 359.97438 * 14 12 11 42 42 H 1.09002 * 109.58903 * 278.66598 * 16 15 12 43 43 H 1.08993 * 109.59299 * 39.10006 * 16 15 12 44 44 H 1.08996 * 109.58138 * 291.50339 * 17 16 15 45 45 H 1.09005 * 109.58043 * 171.10180 * 17 16 15 46 46 H 0.97003 * 120.00251 * 179.97438 * 22 21 19 47 47 H 1.09008 * 109.58019 * 297.10966 * 27 18 17 48 48 H 1.08999 * 109.57922 * 176.70370 * 27 18 17 49 49 H 1.08998 * 109.59313 * 320.90662 * 28 15 12 50 50 H 1.09004 * 109.58981 * 81.19286 * 28 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1485 1.1514 0.0000 4 6 3.4712 1.1905 0.0005 5 6 4.1808 -0.0002 0.0063 6 6 3.4712 -1.1905 0.0014 7 6 4.1959 -2.5117 0.0030 8 6 3.7155 -3.3557 1.1853 9 6 4.4398 -4.6771 1.1865 10 8 5.2600 -4.9199 0.3266 11 7 4.1762 -5.5893 2.1431 12 6 4.8808 -6.8737 2.1446 13 1 5.4812 -7.0816 1.2590 14 6 5.3972 -7.3948 3.4875 15 6 4.1904 -8.0565 2.8226 16 6 4.3897 -9.4454 2.2083 17 6 4.0912 -10.5048 3.2761 18 7 2.7811 -10.2182 3.8744 19 6 1.7901 -11.1631 3.8572 20 1 0.7540 -10.8588 3.8462 21 6 2.1174 -12.5121 3.8538 22 7 3.3227 -12.8977 4.2155 23 14 0.8472 -13.7800 3.3359 24 1 0.4202 -13.5110 1.9393 25 1 1.4413 -15.1385 3.4195 26 1 -0.3297 -13.6986 4.2378 27 6 2.5459 -8.9063 4.4909 28 6 2.8129 -7.8146 3.4476 29 7 2.1483 -1.1512 0.0005 30 1 -0.3634 0.0005 1.0276 31 1 -0.3634 0.8898 -0.5142 32 1 -0.3633 -0.8901 -0.5135 33 1 3.9906 2.1373 0.0009 34 1 5.2608 -0.0003 0.0109 35 1 5.2682 -2.3378 0.0928 36 1 3.9902 -3.0401 -0.9279 37 1 3.9212 -2.8273 2.1162 38 1 2.6432 -3.5295 1.0955 39 1 3.5205 -5.3949 2.8310 40 1 6.3378 -7.9457 3.4855 41 1 5.2131 -6.7819 4.3698 42 1 3.7094 -9.5736 1.3663 43 1 5.4198 -9.5500 1.8677 44 1 4.8601 -10.4723 4.0479 45 1 4.0742 -11.4928 2.8159 46 1 3.5514 -13.8404 4.2136 47 1 3.2193 -8.7747 5.3380 48 1 1.5120 -8.8423 4.8302 49 1 2.7968 -6.8370 3.9294 50 1 2.0479 -7.8523 2.6721 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001661068716.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:08:47 Heat of formation + Delta-G solvation = 45.857511 kcal Electronic energy + Delta-G solvation = -29053.758205 eV Core-core repulsion = 25081.930097 eV Total energy + Delta-G solvation = -3971.828108 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.49739 -40.02858 -38.49457 -35.65986 -35.30167 -33.80134 -33.18443 -31.91857 -31.42224 -30.00577 -28.93255 -28.29508 -26.29053 -24.34911 -23.67542 -22.54313 -22.44496 -21.63703 -20.75887 -20.26659 -18.23244 -18.00429 -17.45768 -16.64904 -16.29423 -16.06919 -15.75436 -15.55869 -15.48877 -14.82514 -14.31507 -14.13677 -13.95715 -13.54574 -13.51549 -13.41199 -13.20273 -13.09437 -12.93298 -12.72884 -12.61613 -12.43005 -12.24227 -11.71300 -11.63709 -11.56155 -11.32099 -11.23360 -10.96597 -10.89458 -10.71965 -10.45516 -10.34169 -10.01537 -9.95270 -9.78437 -9.69395 -9.63478 -9.58941 -9.34960 -8.46635 -8.44737 -6.64328 -5.78987 -3.22192 0.49394 0.66021 2.53026 3.01957 3.33249 3.38310 3.44355 3.45835 3.49784 3.68967 4.04682 4.17383 4.43021 4.49718 4.63275 4.70013 4.77082 4.82715 4.97109 4.98086 5.08168 5.13022 5.14301 5.16685 5.24562 5.39104 5.42464 5.49037 5.51809 5.63408 5.63641 5.70149 5.86498 6.03592 6.05335 6.06948 6.09538 6.28481 6.43343 6.56432 6.61090 6.63513 6.64305 6.69597 6.83042 6.95842 7.36521 7.46985 7.66960 7.72130 7.79322 8.16683 8.46488 9.21721 9.85317 10.41913 11.28741 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.018267 B = 0.001846 C = 0.001736 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1532.482275 B =15166.405861 C =16125.666297 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C 0.320 3.680 3 N -0.527 5.527 4 C 0.153 3.847 5 C -0.233 4.233 6 C 0.184 3.816 7 C -0.055 4.055 8 C -0.132 4.132 9 C 0.516 3.484 10 O -0.545 6.545 11 N -0.695 5.695 12 C 0.068 3.932 13 H 0.132 0.868 14 C -0.183 4.183 15 C -0.096 4.096 16 C -0.106 4.106 17 C 0.173 3.827 18 N -0.589 5.589 19 C -0.254 4.254 20 H 0.064 0.936 21 C 0.003 3.997 22 N -0.901 5.901 23 Si 0.901 3.099 24 H -0.284 1.284 25 H -0.291 1.291 26 H -0.283 1.283 27 C 0.150 3.850 28 C -0.097 4.097 29 N -0.516 5.516 30 H 0.087 0.913 31 H 0.085 0.915 32 H 0.087 0.913 33 H 0.169 0.831 34 H 0.149 0.851 35 H 0.093 0.907 36 H 0.099 0.901 37 H 0.091 0.909 38 H 0.106 0.894 39 H 0.401 0.599 40 H 0.098 0.902 41 H 0.090 0.910 42 H 0.060 0.940 43 H 0.051 0.949 44 H 0.018 0.982 45 H 0.090 0.910 46 H 0.254 0.746 47 H 0.019 0.981 48 H 0.054 0.946 49 H 0.045 0.955 50 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.497 26.708 -6.271 27.475 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.053 3.947 3 N -0.242 5.242 4 C -0.013 4.013 5 C -0.255 4.255 6 C 0.038 3.962 7 C -0.094 4.094 8 C -0.172 4.172 9 C 0.303 3.697 10 O -0.423 6.423 11 N -0.344 5.344 12 C -0.038 4.038 13 H 0.149 0.851 14 C -0.221 4.221 15 C -0.097 4.097 16 C -0.145 4.145 17 C 0.047 3.953 18 N -0.311 5.311 19 C -0.384 4.384 20 H 0.081 0.919 21 C -0.196 4.196 22 N -0.545 5.545 23 Si 0.731 3.269 24 H -0.210 1.210 25 H -0.216 1.216 26 H -0.209 1.209 27 C 0.023 3.977 28 C -0.136 4.136 29 N -0.231 5.231 30 H 0.105 0.895 31 H 0.104 0.896 32 H 0.106 0.894 33 H 0.186 0.814 34 H 0.166 0.834 35 H 0.112 0.888 36 H 0.117 0.883 37 H 0.110 0.890 38 H 0.124 0.876 39 H 0.236 0.764 40 H 0.116 0.884 41 H 0.109 0.891 42 H 0.079 0.921 43 H 0.070 0.930 44 H 0.036 0.964 45 H 0.108 0.892 46 H 0.064 0.936 47 H 0.037 0.963 48 H 0.073 0.927 49 H 0.063 0.937 50 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 1.143 26.359 -6.868 27.263 hybrid contribution 0.185 -0.492 0.214 0.568 sum 1.329 25.867 -6.654 26.742 Atomic orbital electron populations 1.20592 0.85594 1.04288 1.04039 1.23309 0.98268 0.83288 0.89830 1.68273 1.10218 1.30559 1.15143 1.23247 0.89687 0.98671 0.89693 1.22802 1.03090 0.94127 1.05474 1.21764 0.89603 0.95888 0.88934 1.20355 0.99290 0.89697 1.00028 1.21541 1.02522 0.93244 0.99912 1.20533 0.82561 0.85529 0.81089 1.90696 1.34844 1.79387 1.37335 1.45423 1.42871 1.15914 1.30226 1.21913 1.00816 0.83413 0.97623 0.85073 1.23525 0.99305 1.03570 0.95723 1.21950 0.93737 0.93507 1.00539 1.21882 0.99602 0.93036 1.00029 1.20766 0.86017 0.96522 0.91985 1.43962 1.11921 1.10866 1.64371 1.19137 0.87717 0.85964 1.45589 0.91855 1.25048 0.96796 0.97469 1.00278 1.70022 1.20028 1.15180 1.49297 0.86389 0.80949 0.80679 0.78866 1.21012 1.21647 1.20895 1.20839 0.98472 0.85989 0.92398 1.21625 0.94170 0.98286 0.99557 1.68100 1.09553 1.30569 1.14897 0.89480 0.89628 0.89434 0.81424 0.83357 0.88835 0.88292 0.89046 0.87583 0.76367 0.88368 0.89117 0.92111 0.93028 0.96368 0.89174 0.93569 0.96338 0.92744 0.93684 0.91749 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.56 10.32 36.01 0.37 -0.19 16 2 C 0.32 3.01 7.64 -157.21 -1.20 1.81 16 3 N -0.53 -4.91 10.33 -10.72 -0.11 -5.02 16 4 C 0.15 1.08 11.31 -17.20 -0.19 0.89 16 5 C -0.23 -1.61 9.80 -39.31 -0.39 -1.99 16 6 C 0.18 1.61 6.20 -82.25 -0.51 1.10 16 7 C -0.06 -0.47 4.94 -27.88 -0.14 -0.61 16 8 C -0.13 -1.14 5.57 -27.88 -0.16 -1.29 16 9 C 0.52 6.25 7.83 -10.99 -0.09 6.16 16 10 O -0.55 -8.52 15.55 5.55 0.09 -8.44 16 11 N -0.70 -8.31 5.34 -53.88 -0.29 -8.60 16 12 C 0.07 0.97 6.14 -68.01 -0.42 0.55 16 13 H 0.13 2.05 7.40 -51.93 -0.38 1.67 16 14 C -0.18 -2.60 9.86 -26.79 -0.26 -2.86 16 15 C -0.10 -1.55 1.94 -154.49 -0.30 -1.85 16 16 C -0.11 -2.01 5.83 -26.46 -0.15 -2.16 16 17 C 0.17 4.05 5.40 -3.67 -0.02 4.03 16 18 N -0.59 -14.46 2.94 -172.25 -0.51 -14.96 16 19 C -0.25 -6.89 9.54 -15.06 -0.14 -7.04 16 20 H 0.06 1.69 7.89 -52.49 -0.41 1.27 16 21 C 0.00 0.08 4.88 -17.43 -0.09 -0.01 16 22 N -0.90 -25.92 11.23 55.49 0.62 -25.30 16 23 Si 0.90 21.55 29.59 -169.99 -5.03 16.52 16 24 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 25 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 26 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 27 C 0.15 3.03 6.52 -3.67 -0.02 3.00 16 28 C -0.10 -1.58 5.37 -26.46 -0.14 -1.72 16 29 N -0.52 -5.16 9.94 -6.99 -0.07 -5.23 16 30 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.09 0.53 8.14 -51.93 -0.42 0.10 16 33 H 0.17 0.62 8.06 -52.49 -0.42 0.20 16 34 H 0.15 0.64 8.01 -52.48 -0.42 0.22 16 35 H 0.09 0.72 7.90 -51.93 -0.41 0.31 16 36 H 0.10 0.95 8.10 -51.93 -0.42 0.53 16 37 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.11 0.91 7.98 -51.93 -0.41 0.49 16 39 H 0.40 3.99 7.12 -40.82 -0.29 3.70 16 40 H 0.10 1.38 8.14 -51.93 -0.42 0.96 16 41 H 0.09 1.19 8.14 -51.93 -0.42 0.77 16 42 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 43 H 0.05 0.89 8.10 -51.93 -0.42 0.46 16 44 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 45 H 0.09 2.38 5.93 -51.93 -0.31 2.07 16 46 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 47 H 0.02 0.38 8.14 -51.92 -0.42 -0.04 16 48 H 0.05 1.08 7.92 -51.93 -0.41 0.67 16 49 H 0.04 0.59 6.75 -51.93 -0.35 0.24 16 50 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 LS Contribution 406.23 15.07 6.12 6.12 Total: -1.00 -33.05 406.23 -11.05 -44.10 By element: Atomic # 1 Polarization: 11.01 SS G_CDS: -8.03 Total: 2.98 kcal Atomic # 6 Polarization: 1.66 SS G_CDS: -3.85 Total: -2.19 kcal Atomic # 7 Polarization: -58.75 SS G_CDS: -0.35 Total: -59.10 kcal Atomic # 8 Polarization: -8.52 SS G_CDS: 0.09 Total: -8.44 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.03 Total: 16.52 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -33.05 -11.05 -44.10 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001661068716.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.957 kcal (2) G-P(sol) polarization free energy of solvation -33.047 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.910 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.099 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.858 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds